diff --git a/bpRNA.pl b/bpRNA.pl index d6c0c77..aff8aef 100644 --- a/bpRNA.pl +++ b/bpRNA.pl @@ -339,7 +339,7 @@ sub buildStructureMap { } } if($regions{"I"}) { - my $iG = Graph::Undirected->new; + my $iG = Graph->new(undirected=>1); for(my $i=0;$i<@{$regions{"I"}};$i++) { my($iStart,$iStop) = @{$regions{"I"}[$i]}; for(my $j=$i+1;$j<@{$regions{"I"}};$j++) { @@ -979,7 +979,7 @@ sub separateSegments { my($segments) = @_; my $warnings = ""; my %knot; - my $G = Graph::Undirected->new; + my $G = Graph->new(undirected=>1); if(@{$segments} > 1) { for(my $i=0;$i<@{$segments}-1;$i++) { my @segment1 = @{$segments->[$i]};