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Chapter 7.
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[]\TU/lmtt/m/n/10 ##   .. .. .. .. ..$ : chr [1:130] "Actinomycetaceae" "Aeroco
ccus" "Aeromonas" "Akkermansia" ...[] 
 []


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[]\TU/lmtt/m/n/10 ##   .. .. .. ..$ : chr [1:130] "Actinomycetaceae" "Aerococcu
s" "Aeromonas" "Akkermansia" ...[] 
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[]\TU/lmtt/m/n/10 ##   .. .. .. ..$ : int [1:1151] 28 24 52 22 25 42 25 27 21 2
5 ...[] 
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NA NA NA NA NA NA NA ...[] 
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[]\TU/lmtt/m/n/10 ##   .. .. .. ..$ : num [1:1151] 5.76 6.06 5.5 5.87 5.89 5.53
 5.49 5.38 5.34 5.64 ...[] 
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[]\TU/lmtt/m/n/10 ##   .. .. .. ..$ : Factor w/ 1006 levels "1","2","3","4",..:
 1 2 3 4 5 6 7 8 9 10 ...[] 
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[]\TU/lmtt/m/n/10 ##   .. .. .. ..$ : chr [1:1151] "Sample-1" "Sample-2" "Sampl
e-3" "Sample-4" ...[] 
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[]\TU/lmtt/m/n/10 ##   .. .. ..@ names    : chr [1:10] "age" "sex" "nationality
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[]\TU/lmtt/m/n/10 ##   .. .. ..@ row.names: chr [1:1151] "Sample-1" "Sample-2" 
"Sample-3" "Sample-4" ...[] 
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[]\TU/lmtt/m/n/10 ##          age    sex nationality DNA_extraction_method proj
ect diversity[] 
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[]\TU/lmtt/m/n/10 ## Sample-1  28   male          US                  <NA>     
  1      5.76[] 
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[]\TU/lmtt/m/n/10 ## Sample-2  24 female          US                  <NA>     
  1      6.06[] 
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[]\TU/lmtt/m/n/10 ## Sample-3  52   male          US                  <NA>     
  1      5.50[] 
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[]\TU/lmtt/m/n/10 ## Sample-4  22 female          US                  <NA>     
  1      5.87[] 
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[]\TU/lmtt/m/n/10 ## Sample-5  25 female          US                  <NA>     
  1      5.89[] 
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[]\TU/lmtt/m/n/10 ## Sample-6  42   male          US                  <NA>     
  1      5.53[] 
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[]\TU/lmtt/m/n/10 ## Warning in prop.test(x = c(268910, 7), n = c(1924665, 20))
: Chi-squared[] 
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[]\TU/lmtt/m/n/10 ##  2-sample test for equality of proportions with continuity
 correction[] 
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[]\TU/lmtt/m/n/10 ## Warning in prop.test(x = 7, n = 20, p = 0.14): Chi-squared
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roximation may be[] 
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[]\TU/lmtt/m/n/10 ##   estimate statistic p.value parameter conf.low conf.high 
method     alternative[] 
 []


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[]\TU/lmtt/m/n/10 ##      <dbl>     <dbl>   <dbl>     <int>    <dbl>     <dbl> 
<chr>      <chr>[] 
 []


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[]\TU/lmtt/m/n/10 ## 1     0.35      5.69  0.0171         1    0.163     0.591 
1-sample ~ two.sided[] 
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0.01534[] 
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 equal to 0.14[] 
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 for
 []

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ogLik    AIC    BIC[] 
 []


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<dbl>  <dbl>  <dbl>[] 
 []


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6332. 32670. 32690.[] 
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td.resid[] 
 []


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   <dbl>[] 
 []


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   1.34[] 
 []


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   0.839[] 
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   0.415[] 
 []

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package.[] 
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gfortify/issues>.[] 
 []


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formation.[] 
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package.[] 
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gfortify/issues>.[] 
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logLik    AIC    BIC[] 
 []


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 <dbl>  <dbl>  <dbl>[] 
 []


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21234. 42484. 42536.[] 
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    temp  dptp   rhum[] 
 []


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[]\TU/lmtt/m/n/10 ## 1 1987-06-01  152 1987   Jun 152    Monday   112  60    5 
23.61111 68.50 71.875[] 
 []


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[]\TU/lmtt/m/n/10 ## 2 1987-06-02  153 1987   Jun 153   Tuesday   111  57    7 
22.22222 64.75 95.250[] 
 []


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[]\TU/lmtt/m/n/10 ## 3 1987-06-03  154 1987   Jun 154 Wednesday   120  59    9 
20.55556 47.25 47.125[] 
 []


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[]\TU/lmtt/m/n/10 ##   null.deviance df.null logLik   AIC   BIC deviance df.res
idual  nobs[] 
 []


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<int> <int>[] 
 []

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[]\TU/lmtt/m/n/10 ## 1         1499.    1287 -3211. 6425. 6436.    1494.       
 1286  1288[] 
 []


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[]\TU/lmtt/m/n/10 ##   term        estimate std.error statistic   p.value conf.
low conf.high[] 
 []


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[]\TU/lmtt/m/n/10 ##   <chr>          <dbl>     <dbl>     <dbl>     <dbl>    <d
bl>     <dbl>[] 
 []


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       2.02[] 
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[]\TU/lmtt/m/n/10 ## 2 temp         0.00614   0.00258      2.38 1.74e-  2  0.00
108    0.0112[] 
 []

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rm = TRUE))[] 
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----------------------[] 
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Chapter 8.
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[]\TU/lmtt/m/n/10 ## Bounding box:  xmin: -108.3811 ymin: 36.99902 xmax: -105.0
487 ymax: 39.91437[] 
 []


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[]\TU/lmtt/m/n/10 ##   STATEFP COUNTYFP COUNTYNS        GEOIDFQ GEOID      NAME
         NAMELSAD[] 
 []


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[]\TU/lmtt/m/n/10 ## 1      08      067 00198148 0500000US08067 08067  La Plata
  La Plata County[] 
 []


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[]\TU/lmtt/m/n/10 ## 2      08      059 00198145 0500000US08059 08059 Jefferson
 Jefferson County[] 
 []


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[]\TU/lmtt/m/n/10 ## 3      08      065 00198149 0500000US08065 08065      Lake
      Lake County[] 
 []


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[]\TU/lmtt/m/n/10 ##   STUSPS STATE_NAME LSAD      ALAND   AWATER              
         geometry[] 
 []


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[]\TU/lmtt/m/n/10 ## 1     CO   Colorado   06 4376255274 25642579 MULTIPOLYGON 
(((-108.3796 3...[] 
 []


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[]\TU/lmtt/m/n/10 ## 2     CO   Colorado   06 1979762077 25052756 MULTIPOLYGON 
(((-105.0558 3...[] 
 []


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[]\TU/lmtt/m/n/10 ## 3     CO   Colorado   06  976215866 18111565 MULTIPOLYGON 
(((-106.5862 3...[] 
 []

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Chapter 9.
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Chapter 10.
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[399] [400] [401] [402]
Chapter 11.
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Chapter 12.

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