Surfa 0.6.3 does not work with numpy 2.x.x

[aymenDeemea]

Hello, I encountered the following issue when trying to use surfa v0.6.3 with numpy 2.4.6. Could you precise it the issues with numpy>2.x.x are solved in this surfa version or not?

ERROR: [2026-06-17 11:53:02,8080] -- (17906edb) -- --- SynthStrip Error Log ---
TypeError: only 0-dimensional arrays can be converted to Python scalars

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/user/app/synthstrip/mri_synthstrip.py", line 306, in <module>
    conformed = frame.conform(
                ^^^^^^^^^^^^^^
  File "/home/user/app/.venv/lib/python3.12/site-packages/surfa/image/framed.py", line 649, in conform
    conformed = conformed.reorient(orientation, copy=False)
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/user/app/.venv/lib/python3.12/site-packages/surfa/image/framed.py", line 507, in reorient
    world_axes_src[swapped_axis_idx], world_axes_src[i] = world_axes_src[i], world_axes_src[swapped_axis_idx]
                                      ~~~~~~~~~~~~~~^^^
ValueError: setting an array element with a sequence.


ERROR: [2026-06-17 11:53:02,8083] -- (17906edb) -- --- SynthStrip Output Log ---
Configuring model on the CPU
Running SynthStrip model version 1
Excluding CSF from brain boundary
Input image read from: FLAIR.nii.gz
Processing frame (of 1): 1 

ERROR: [2026-06-17 11:53:02,8084] -- Error occurred: SynthStrip failed with exit code 1