Skip to content

Wrong DNA sequence FASTA format produced #1

Description

@TSL-RamKrishna

I tested gBLASTg and the DNA sequence FASTA file produced was in wrong format. Example of DNA output is:

>MEP14_1-R10-10-A1
atgcgtgcatttgcaagtttttacttattcgctggcctggttgccgcccaattcaactccgcaacccccgagacaggactgcgctgttgcggccagggcacgacagatcctggcgaaacctgcaaaaaaatgaaactggacgctttttgctgcagcaatttcaag
ggtttcttgggtggatgtgatccgattgacaatttcaaaataggacgcaatgttatcgcgactgctagtggcgccggcggatgtacttgggggctgttcgttgtgggccccctcaaagagggggttacaaaaccttga>MEP13_1-R1-1-A1
atgcaccccgagaaccttttcgccatcctggccaccgccacggcgcttttcccagcctctgcctgggcgtcgcgtccttaccatggtcggatccaggacttaagaaggcccttgttgtgcgatgtttacattgagtatccttccggtcaagtatttgaccaggcactcggccacgacatagtgccagcgggcgaaacggcggaaatcagcggtttcaagtgcaaaaccgtccgcggcacgtgtgtgatcctgccaacgtgcgacacccccccagagtatcgtgtcacgagctggaagtttgaaagagaaatgagcgatcctgaaaggacacggttcatcgccaggttc
>MGG_01532_1-R1-1-A1
gctgtgctcgttgttcgcttcactccttccttaatccaacttattgaacatattgagctgtgctctttattccatataaactactttttaattccgtcctcaacgatcttttttataccaacacccaaaaacctacccccttcaaccatcaaaatgaagttctccgccatcatcgtcagcgctctggccgctttcgtcactgctgctcccaccagcacccctgaggctactactactgagcttcagactcgcgccttcgctttcgacctgaacgcgttcaacaacttccagttcgtgaaccaggaccttgcctacctgaacgttctgaaccagttcgcgttcaacaacatccacggtctcgctgtcaacaacggcctcaaccttaatgctttccagggcctgttcgcccagcaacagttcgacctcaacagcctgctcctgatctcgcaactgcacaccttcaaccagatcgcctcgctcggtgtcctcaacaacttcaacctccaggccttccagttccagaacttccagctcggcctgctgcagcccggcttcaaccagatccagctcggccagttcatcacccccactgtcggcacgcaaatcggtggcatcgccaagcagcagagg
gttctacacaaagacccatgggatgaaggtacttctagttcgggcctcgccgcctggggtagctggtccttcctcctagcaaaccatctccgcttctattttcttggcctgtcgatcaccttacaacctctttcttccttttattga>MGG_12275_1-R1-1-A1
atgttgcacccctgtcctgtctttttcccgtcgtcg
cgctggtctgctttcctgggatcatcggttttttgctgcctcacacccgtcggtctctactatttactactcttttcgtgttcactaataccccattttaatacttcttttttgacgtca
acgaatataaagaagcaagaaaaaaaaagaaagaaactccagtcaggaaacaggacattaattagctcaaaaagatgccttccatcatcaagacagcaggcctcgcgttcgccggtttggccgcctttgcttcggccctcccctcacagtcgaggttcttctcgaggagtacttacgagaagcgccaggccgcccctccggctgccgctgaccctgccggtggccttaccgatgtcgacatcctgcagt
tccacctcgaggccgccttctaccagcagggtttcgccaagttccccgccgcccagttccaggcccttggtgctaccccccagcaggtcaccgatctcctcggcgttggtgccagcgagcaggcccacgtcaccttcctgcagagcgccatcgctcaggccggcaccaagcccgtccagccctgcaagtacaacttcaagttcaccgacgccgctggcatgctgggtaccgcatccgtcctcgagagcgtcggtgtctcggcttacctgggcgccgctcccttggtcaaggacaagtctatcctgtccgctgccggctccatcctcaccattgaggcccgccaccagaccgccatcaacatcgtctcgcagctcgccggctcccccggtgcctttgacgctcctctgggccccagggaggtcttctcgctggccgctcccttcatcgagtcgtgccccgatggttccaacctcgccatcaaggcgttcccctccttggccatggctcccggcaccaaggccactgctttgt
cgtcggaccaggcccagggcgcacagttctgcggtttcaccaacggccagatcatcggaggtaccgcctttgctcccttcaccgccggcgctggatgtgtcatccctcagaacctggccggcatcgtttacgtcaccctcaccaaccaggccc
ccttttctttttctttttttatacttcccctttcatctccgagatgtatattgggcattgtggtggctggcatcaaaaggaaatttactgggaatgaaacacgacttgagtaaaggg
gccgcagcgttgagctgcctggatatgagagcttgtctctctggccgt
gggctttcacctattgtttcttttctttcatgctttttagaagcaagcaactttaatctttttttttcaagcctcttattttcctatgtcacgtctttttgtatgaatctgccg
caaggatcaatatag>MGG_08411_1-R1-1-A1
tatgtgcaccagcccactcttggttggaatcttcacggtgacgtgttcttcttcgtctgcgctgctggtgtctgctccactgtgcgggcgatgaacaatatccaccttttttacattagcttgatgcgcgaactgttcaattatcggcaaccaaatttccgattgcgactctgtcat

As you see the character ">" appear towards the end of sequence as well.

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions