From 08fc0b86ca0d344b0753a387704bd8db734505fc Mon Sep 17 00:00:00 2001 From: edithatogo <15080672+edithatogo@users.noreply.github.com> Date: Fri, 7 Aug 2026 06:35:20 +0000 Subject: [PATCH] =?UTF-8?q?=F0=9F=94=92=20Fix=20missing=20timeout=20in=20H?= =?UTF-8?q?TTP=20requests?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .../mapping-robustness-table.json | 12 ++++++------ .../missing-game-theory-element-dispositions.json | 4 ++-- .../article-facing-tables/module-audit-table.json | 2 +- .../article-tables/mapping-robustness-table.json | 12 ++++++------ .../missing-game-theory-element-dispositions.json | 4 ++-- .../article-tables/module-audit-table.json | 2 +- scripts/maintenance/check_github.py | 2 +- scripts/review/query_databases.py | 2 +- scripts/review/snowball.py | 2 +- 9 files changed, 21 insertions(+), 21 deletions(-) diff --git a/docs/article-hardening/article-facing-tables/mapping-robustness-table.json b/docs/article-hardening/article-facing-tables/mapping-robustness-table.json index 4b19b97..94a783f 100644 --- a/docs/article-hardening/article-facing-tables/mapping-robustness-table.json +++ b/docs/article-hardening/article-facing-tables/mapping-robustness-table.json @@ -214,11 +214,11 @@ ], "schema": "uogto.article.mapping-robustness-table.v1", "sources": [ - "docs\\ontology-comparison\\mapping-robustness\\mapping-robustness-ablation.json", - "docs\\ontology-comparison\\mapping-calibration\\mapping-review-calibration.json", - "docs\\ontology-comparison\\network-sensitivity.json", - "docs\\ontology-comparison\\accepted-alignments.sssom.tsv", - "docs\\ontology-comparison\\accepted-alignments.sssom.yml", - "docs\\ontology-comparison\\mapping-review.csv" + "docs/ontology-comparison/mapping-robustness/mapping-robustness-ablation.json", + "docs/ontology-comparison/mapping-calibration/mapping-review-calibration.json", + "docs/ontology-comparison/network-sensitivity.json", + "docs/ontology-comparison/accepted-alignments.sssom.tsv", + "docs/ontology-comparison/accepted-alignments.sssom.yml", + "docs/ontology-comparison/mapping-review.csv" ] } diff --git a/docs/article-hardening/article-facing-tables/missing-game-theory-element-dispositions.json b/docs/article-hardening/article-facing-tables/missing-game-theory-element-dispositions.json index b1fbd82..0571237 100644 --- a/docs/article-hardening/article-facing-tables/missing-game-theory-element-dispositions.json +++ b/docs/article-hardening/article-facing-tables/missing-game-theory-element-dispositions.json @@ -65,7 +65,7 @@ ], "schema": "uogto.article.missing-game-theory-element-dispositions.v1", "sources": [ - "docs\\article-hardening\\uogto-inclusion-candidates.json", - "docs\\article-hardening\\uogto-inclusion-candidates.csv" + "docs/article-hardening/uogto-inclusion-candidates.json", + "docs/article-hardening/uogto-inclusion-candidates.csv" ] } diff --git a/docs/article-hardening/article-facing-tables/module-audit-table.json b/docs/article-hardening/article-facing-tables/module-audit-table.json index 4bcd711..d121024 100644 --- a/docs/article-hardening/article-facing-tables/module-audit-table.json +++ b/docs/article-hardening/article-facing-tables/module-audit-table.json @@ -985,6 +985,6 @@ ], "schema": "uogto.article.module-audit-table.v1", "sources": [ - "docs\\article-hardening\\quality-metrics.json" + "docs/article-hardening/quality-metrics.json" ] } diff --git a/docs/article-hardening/article-tables/mapping-robustness-table.json b/docs/article-hardening/article-tables/mapping-robustness-table.json index 4b19b97..94a783f 100644 --- a/docs/article-hardening/article-tables/mapping-robustness-table.json +++ b/docs/article-hardening/article-tables/mapping-robustness-table.json @@ -214,11 +214,11 @@ ], "schema": "uogto.article.mapping-robustness-table.v1", "sources": [ - "docs\\ontology-comparison\\mapping-robustness\\mapping-robustness-ablation.json", - "docs\\ontology-comparison\\mapping-calibration\\mapping-review-calibration.json", - "docs\\ontology-comparison\\network-sensitivity.json", - "docs\\ontology-comparison\\accepted-alignments.sssom.tsv", - "docs\\ontology-comparison\\accepted-alignments.sssom.yml", - "docs\\ontology-comparison\\mapping-review.csv" + "docs/ontology-comparison/mapping-robustness/mapping-robustness-ablation.json", + "docs/ontology-comparison/mapping-calibration/mapping-review-calibration.json", + "docs/ontology-comparison/network-sensitivity.json", + "docs/ontology-comparison/accepted-alignments.sssom.tsv", + "docs/ontology-comparison/accepted-alignments.sssom.yml", + "docs/ontology-comparison/mapping-review.csv" ] } diff --git a/docs/article-hardening/article-tables/missing-game-theory-element-dispositions.json b/docs/article-hardening/article-tables/missing-game-theory-element-dispositions.json index b1fbd82..0571237 100644 --- a/docs/article-hardening/article-tables/missing-game-theory-element-dispositions.json +++ b/docs/article-hardening/article-tables/missing-game-theory-element-dispositions.json @@ -65,7 +65,7 @@ ], "schema": "uogto.article.missing-game-theory-element-dispositions.v1", "sources": [ - "docs\\article-hardening\\uogto-inclusion-candidates.json", - "docs\\article-hardening\\uogto-inclusion-candidates.csv" + "docs/article-hardening/uogto-inclusion-candidates.json", + "docs/article-hardening/uogto-inclusion-candidates.csv" ] } diff --git a/docs/article-hardening/article-tables/module-audit-table.json b/docs/article-hardening/article-tables/module-audit-table.json index 4bcd711..d121024 100644 --- a/docs/article-hardening/article-tables/module-audit-table.json +++ b/docs/article-hardening/article-tables/module-audit-table.json @@ -985,6 +985,6 @@ ], "schema": "uogto.article.module-audit-table.v1", "sources": [ - "docs\\article-hardening\\quality-metrics.json" + "docs/article-hardening/quality-metrics.json" ] } diff --git a/scripts/maintenance/check_github.py b/scripts/maintenance/check_github.py index 1a38502..f75d99d 100644 --- a/scripts/maintenance/check_github.py +++ b/scripts/maintenance/check_github.py @@ -67,7 +67,7 @@ def get_via_api(repo=REPO): headers=headers ) try: - with urllib.request.urlopen(req) as response: + with urllib.request.urlopen(req, timeout=10) as response: data = json.loads(response.read().decode()) issues = [] prs = [] diff --git a/scripts/review/query_databases.py b/scripts/review/query_databases.py index 780d629..0e43479 100644 --- a/scripts/review/query_databases.py +++ b/scripts/review/query_databases.py @@ -13,7 +13,7 @@ def fetch_url(url): headers={"User-Agent": "UOGTO-Scoping-Review-Agent/1.0 (mailto:uogto@example.org)"} ) try: - with urllib.request.urlopen(req) as response: + with urllib.request.urlopen(req, timeout=10) as response: return response.read() except Exception as e: print(f"Error fetching {url}: {e}", file=sys.stderr) diff --git a/scripts/review/snowball.py b/scripts/review/snowball.py index 3098f5d..275b002 100644 --- a/scripts/review/snowball.py +++ b/scripts/review/snowball.py @@ -13,7 +13,7 @@ def fetch_url(url): headers={"User-Agent": "UOGTO-Scoping-Review-Agent/1.0 (mailto:uogto@example.org)"} ) try: - with urllib.request.urlopen(req) as response: + with urllib.request.urlopen(req, timeout=10) as response: return response.read() except Exception as e: print(f"Error fetching {url}: {e}", file=sys.stderr)