The idea when we use a support for a reconstruction or dealing with different scans espacily when there are defects in the particle, it's important to apply a mask to the mode. This can be done by using a parameter that chooses between the threshold based on the bulk calculation or a support provided by the user in the post processing level.
Note: this can be done for a fixed support for example using the support saved in the reconstruction file (cxi) in this case the parameter can be for example "apply_pynx_supp".
The idea when we use a support for a reconstruction or dealing with different scans espacily when there are defects in the particle, it's important to apply a mask to the mode. This can be done by using a parameter that chooses between the threshold based on the bulk calculation or a support provided by the user in the post processing level.
Note: this can be done for a fixed support for example using the support saved in the reconstruction file (cxi) in this case the parameter can be for example "apply_pynx_supp".