_config.yml

# -----------------------------------------------------------------------------
# Site settings
# -----------------------------------------------------------------------------

title: Chenomics # the website title (if blank, full name will be used instead)
first_name: Wei
middle_name: 
last_name: Chen
contact_note: >
  Where there is a will there is a Wei.
description: > # the ">" symbol means to ignore newlines until "footer_text:"
  place holder
footer_text: >
  Powered by <a href="https://jekyllrb.com/" target="_blank">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio">al-folio</a> theme.
  Hosted by <a href="https://pages.github.com/" target="_blank">GitHub Pages</a>.
keywords: jekyll, jekyll-theme, academic-website, portfolio-website # add your own keywords or leave empty
lang: en # the language of your site (for example: en, fr, cn, ru, etc.)
icon: dna.jpg # the emoji used as the favicon (alternatively, provide image name in /assets/img/)

url: https://chenomics.com # the base hostname & protocol for your site
baseurl:  # the subpath of your site, e.g. /blog/. Leave blank for root
last_updated: true # set to true if you want to display last updated in the footer
back_to_top: true # set to false to disable the back to top button

# -----------------------------------------------------------------------------
# Theme
# -----------------------------------------------------------------------------


# -----------------------------------------------------------------------------
# Layout
# -----------------------------------------------------------------------------

navbar_fixed: true
footer_fixed: false

# Dimensions
max_width: 930px

# -----------------------------------------------------------------------------
# Analytics and search engine verification
# -----------------------------------------------------------------------------

google_analytics: # your Google Analytics measurement ID (format: G-XXXXXXXXXX)
google_site_verification: # your google-site-verification ID (Google Search Console)

# Pagination
pagination:
  enabled: true

related_blog_posts:
  enabled: true
  max_related: 5

# -----------------------------------------------------------------------------
# Collections
# -----------------------------------------------------------------------------

collections:
  news:
    defaults:
      layout: post
    output: false
    permalink: /news/:path/
  projects:
    output: true
    permalink: /projects/:path/

# -----------------------------------------------------------------------------
# Jekyll settings
# -----------------------------------------------------------------------------

# Markdown and syntax highlight
markdown: kramdown
highlighter: rouge
kramdown:
  input: GFM
  syntax_highlighter_opts:
    css_class: "highlight"
    span:
      line_numbers: false
    block:
      line_numbers: false
      start_line: 1

# Includes & excludes
include: ["_pages"]
exclude:
  - bin/
  - CONTRIBUTING.md
  - CUSTOMIZE.md
  - Dockerfile
  - docker-compose.yml
  - docker-compose-slim.yml
  - FAQ.md
  - Gemfile
  - Gemfile.lock
  - INSTALL.md
  - LICENSE
  - lighthouse_results/
  - package.json
  - package-lock.json
  - _pages/about_einstein.md
  - purgecss.config.js
  - README.md
  - readme_preview/
  - vendor
keep_files:
  - CNAME
  - .nojekyll

# Plug-ins - STREAMLINED TO ESSENTIALS ONLY
plugins:
  - jekyll-feed
  - jekyll-sitemap
  - jekyll-scholar
  - jekyll-email-protect
  - jekyll-minifier
  - jekyll-terser

# Sitemap settings
defaults:
  - scope:
      path: "assets"
    values:
      sitemap: false

sass:
  style: compressed

# -----------------------------------------------------------------------------
# Jekyll Minifier
# -----------------------------------------------------------------------------

jekyll-minifier:
  compress_javascript: false # set to false since we are using terser as the js minifier

# -----------------------------------------------------------------------------
# Terser
# -----------------------------------------------------------------------------

terser:
  compress:
    drop_console: true


# -----------------------------------------------------------------------------
# Jekyll Scholar
# -----------------------------------------------------------------------------
scholar:
  last_name: [Chen]
  first_name: [Wei, W.]

  style: apa
  locale: en

  source: /_bibliography/
  bibliography: papers.bib
  bibliography_template: bib
  # bibtex_filters: [latex, smallcaps, superscript]

  replace_strings: true
  join_strings: true

  details_dir: bibliography
  details_link: Details

  query: "@*"
  group_by: year
  group_order: descending

# Display different badges withs stats for your publications
# Customize badge behavior in _layouts/bib.liquid
enable_publication_badges:
  altmetric: true # Altmetric badge (Customization options: https://badge-docs.altmetric.com/index.html)
  dimensions: true # Dimensions badge (Customization options: https://badge.dimensions.ai/)
  google_scholar: true # Google Scholar badge (https://scholar.google.com/intl/en/scholar/citations.html)

# Filter out certain bibtex entry keywords used internally from the bib output
filtered_bibtex_keywords:
  [
    abbr,
    abstract,
    additional_info,
    altmetric,
    annotation,
    arxiv,
    award,
    award_name,
    bibtex_show,
    blog,
    code,
    google_scholar_id,
    html,
    pdf,
    poster,
    preview,
    selected,
    slides,
    supp,
    website,
  ]

# Maximum number of authors to be shown for each publication (more authors are visible on click)
max_author_limit: # leave blank to always show all authors
#more_authors_animation_delay: 10 # more authors are revealed on click using animation; smaller delay means faster animation

# Enables publication thumbnails. If disabled, none of the publications will display thumbnails, even if specified in the bib entry.
enable_publication_thumbnails: true

# -----------------------------------------------------------------------------
# Jekyll Link Attributes
# -----------------------------------------------------------------------------

# These are the defaults
external_links:
  enabled: true
  rel: external nofollow noopener
  target: _blank
  exclude:


# Lazy loading images
lazy_loading_images: true # enables lazy loading of images (recommended)

# -----------------------------------------------------------------------------
# Essential Features Only
# -----------------------------------------------------------------------------

enable_darkmode: true # enables switching between light/dark modes
enable_project_categories: true # enables categorization of projects into multiple categories

# -----------------------------------------------------------------------------
# Essential Third Party Libraries Only
# -----------------------------------------------------------------------------

third_party_libraries:
  download: false
  
  jquery:
    integrity:
      js: "sha256-/xUj+3OJU5yExlq6GSYGSHk7tPXikynS7ogEvDej/m4="
    url:
      js: "https://cdn.jsdelivr.net/npm/jquery@{{version}}/dist/jquery.min.js"
    version: "3.6.0"
    
  mdb:
    integrity:
      css: "sha256-jpjYvU3G3N6nrrBwXJoVEYI/0zw8htfFnhT9ljN3JJw="
      js: "sha256-NdbiivsvWt7VYCt6hYNT3h/th9vSTL4EDWeGs5SN3DA="
    url:
      css: "https://cdn.jsdelivr.net/npm/mdbootstrap@{{version}}/css/mdb.min.css"
      js: "https://cdn.jsdelivr.net/npm/mdbootstrap@{{version}}/js/mdb.min.js"
    version: "4.20.0"
    
  medium_zoom:
    integrity:
      js: "sha256-ZgMyDAIYDYGxbcpJcfUnYwNevG/xi9OHKaR/8GK+jWc="
    url:
      js: "https://cdn.jsdelivr.net/npm/medium-zoom@{{version}}/dist/medium-zoom.min.js"
    version: "1.1.0"