From 452a6996c7055d54f797d7effa2b726d2d1429df Mon Sep 17 00:00:00 2001 From: Paul Stretenowich Date: Mon, 23 Mar 2026 12:00:58 -0400 Subject: [PATCH 1/3] Adding Mareike as reviewer and assignee --- .github/workflows/Update-Version-and-create-Releases-PR.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/Update-Version-and-create-Releases-PR.yml b/.github/workflows/Update-Version-and-create-Releases-PR.yml index e28a0ad..50b100c 100644 --- a/.github/workflows/Update-Version-and-create-Releases-PR.yml +++ b/.github/workflows/Update-Version-and-create-Releases-PR.yml @@ -52,7 +52,7 @@ jobs: title: "Release: Candidate Version ${{ steps.update_version.outputs.version }} Pull Request" body: "This pull request contains the updated VERSION file with the new release version and an updated CHANGELOG.md file." base: main - assignees: paulstretenowich - reviewers: paulstretenowich + assignees: paulstretenowich,MareikeJaniak + reviewers: paulstretenowich,MareikeJaniak delete-branch: true labels: automated pr From 482eb7f77d5e2684f831b0c0c2d38b7a0ebd3785 Mon Sep 17 00:00:00 2001 From: Paul Stretenowich Date: Mon, 23 Mar 2026 12:09:31 -0400 Subject: [PATCH 2/3] Addressing new warning + building against amd64 only --- .github/workflows/Dev-Container-Publish.yaml | 3 +++ .github/workflows/Sync-dev-with-main.yml | 3 +++ .github/workflows/Tag-and-Release.yml | 3 +++ .../workflows/Update-Version-and-create-Releases-PR.yml | 3 +++ .github/workflows/reusable-docker-publish.yml | 8 ++++---- 5 files changed, 16 insertions(+), 4 deletions(-) diff --git a/.github/workflows/Dev-Container-Publish.yaml b/.github/workflows/Dev-Container-Publish.yaml index d8d3a80..0713be8 100644 --- a/.github/workflows/Dev-Container-Publish.yaml +++ b/.github/workflows/Dev-Container-Publish.yaml @@ -3,6 +3,9 @@ name: Dev Container Publish on: workflow_dispatch: +env: + FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true + jobs: prepare: runs-on: ubuntu-latest diff --git a/.github/workflows/Sync-dev-with-main.yml b/.github/workflows/Sync-dev-with-main.yml index 5d43232..25d653f 100644 --- a/.github/workflows/Sync-dev-with-main.yml +++ b/.github/workflows/Sync-dev-with-main.yml @@ -7,6 +7,9 @@ on: - completed workflow_dispatch: +env: + FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true + jobs: rebase: runs-on: ubuntu-latest diff --git a/.github/workflows/Tag-and-Release.yml b/.github/workflows/Tag-and-Release.yml index af43aef..a9b6763 100644 --- a/.github/workflows/Tag-and-Release.yml +++ b/.github/workflows/Tag-and-Release.yml @@ -5,6 +5,9 @@ on: types: [closed] branches: ['main'] +env: + FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true + jobs: release: runs-on: ubuntu-latest diff --git a/.github/workflows/Update-Version-and-create-Releases-PR.yml b/.github/workflows/Update-Version-and-create-Releases-PR.yml index 50b100c..ee2d780 100644 --- a/.github/workflows/Update-Version-and-create-Releases-PR.yml +++ b/.github/workflows/Update-Version-and-create-Releases-PR.yml @@ -9,6 +9,9 @@ on: type: string pattern: '^[0-9]+\.[0-9]+\.[0-9]+$' +env: + FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true + jobs: version: runs-on: ubuntu-latest diff --git a/.github/workflows/reusable-docker-publish.yml b/.github/workflows/reusable-docker-publish.yml index 7896e0a..d907a89 100644 --- a/.github/workflows/reusable-docker-publish.yml +++ b/.github/workflows/reusable-docker-publish.yml @@ -12,7 +12,7 @@ on: platforms: required: false type: string - default: linux/amd64,linux/arm64 + default: linux/amd64 dockerfile: required: false type: string @@ -25,6 +25,9 @@ on: token: required: true +env: + FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true + jobs: docker-publish: runs-on: ubuntu-latest @@ -41,9 +44,6 @@ jobs: - name: Update package lists run: sudo apt-get update - - name: Install QEMU - uses: docker/setup-qemu-action@v3 - - name: Set up Docker Buildx uses: docker/setup-buildx-action@v3 From 65d9238d530c39730196755803fde324ceb43f50 Mon Sep 17 00:00:00 2001 From: MareikeJaniak Date: Tue, 24 Mar 2026 12:24:45 -0400 Subject: [PATCH 3/3] add miseq to config --- RunDashboard/config.ini | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/RunDashboard/config.ini b/RunDashboard/config.ini index bf91551..212a758 100644 --- a/RunDashboard/config.ini +++ b/RunDashboard/config.ini @@ -22,4 +22,11 @@ dup=['report_saved_raw_data']['multiqc_general_stats'] vcf=['report_general_stats_data'] bases=['report_saved_raw_data']['multiqc_general_stats'] -# add more sequencers as required \ No newline at end of file +[miseq] +depth=['report_saved_raw_data']['multiqc_general_stats'] +yield1=['report_saved_raw_data']['multiqc_general_stats'] +q30=['report_saved_raw_data']['multiqc_general_stats'] +dup=['report_saved_raw_data']['multiqc_general_stats'] +vcf=['report_general_stats_data'] +bases=['report_saved_raw_data']['multiqc_general_stats'] +# add more sequencers as required