flowdex/_pkgdown.yml at main · bpollner/flowdex · GitHub

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url: https://bpollner.github.io/flowdex/
template:
  bootstrap: 5

navbar:
 components:
   articles:
    text: Articles
    menu:
    - text: Background
    - text: Description
      href: articles/description.html
    - text: Re-Calculate to Events per Volume Unit
      href: articles/bottled_water.html
    - text: -------
    - text: "Tutorial"
    - text: "Acquire Data"
      href: articles/acquire_data.html
    - text: "Workflow 1: Define Gating Strategy and Polygon Gates"
      href: articles/workflow_1.html
    - text: "Workflow 2: Extract Fluorescence Distributions"
      href: articles/workflow_2.html
    - text: "Repair & Accessory Functions"
      href: articles/accessory.html
    - text: -------
    - text: "Acknowledgements"
      href: articles/acknowledgements.html

reference:
- title: "Package flowdex"
  desc: ""
  contents:
  - flowdex

- title: "Setup Functions"
  desc: ""
  contents:
  - setup_settings
  - genfs
  - fd_update_settings

- title: "Repair Functions"
  desc: ""
  contents:
  - checkRepairFcsFiles
  - repairVolumes
  - repairSID

- title: "Gating & Data Extraction"
  desc: ""
  contents:
  - flowdexit
  - makefdmat
  - makeGatingSet
  - makeAddGatingSet
  - addGates
  - getEventsPerVolume
  - cutFdmatToGate
  - exportFdmatData

- title: "Plot Functions"
  desc: ""
  contents:
  - drawGate
  - plotgates
  - plotFlscDist

- title: "Accessory Functions"
  desc: ""
  contents:
  - fd_save
  - fd_load
  - applyBandpass

- title: "Class Documentation"
  desc: ""
  contents:
  - class-eventsPV
  - class-cyTags
  - class-gatingStrategy_fd
  - class-GatingSet_fd
  - class-fdmat_single
  - class-fdmat

- title: "Other Functions"
  desc: ""
  contents:
  - check_download_data