I use pixi install bioconda::STAR
But when I use starsolo I found the input reads is 0 in final.Log.out
So I Compile STAR by manual, if you don't add --quantMode TranscriptomeSAM, it can work. But if you add it, it will report error
Transcriptome.cpp:18:Transcriptome: exiting because of INPUT FILE error: could not open input file /geneInfo.tab
Solution: check that the file exists and you have read permission for this file
SOLUTION: utilize --sjdbGTFfile /path/to/annotations.gtf option at the genome generation step or mapping step
60507 Segmentation fault: 11
I use pixi install bioconda::STAR
But when I use starsolo I found the input reads is 0 in final.Log.out
So I Compile STAR by manual, if you don't add --quantMode TranscriptomeSAM, it can work. But if you add it, it will report error
Transcriptome.cpp:18:Transcriptome: exiting because of INPUT FILE error: could not open input file /geneInfo.tab
Solution: check that the file exists and you have read permission for this file
SOLUTION: utilize --sjdbGTFfile /path/to/annotations.gtf option at the genome generation step or mapping step
60507 Segmentation fault: 11