Hello. Another thing I noticed in your preprocess wrapper is the impute.QRILC process.
Based on your feedback. The input data matrix for GS_impute command should be samples in rows and features in columns.
However it seems impute.QRILC requires a data matrix with samples in columns and features in rows. You could actually see it in the original code in the impute.QRILC function. I'd like to know if this is actually correct? I didn't see any transpose in your preprocess wrapper? Could author rectify the code and inform which is the correct protocol?
Many thanks
Hello. Another thing I noticed in your preprocess wrapper is the impute.QRILC process.
Based on your feedback. The input data matrix for GS_impute command should be samples in rows and features in columns.
However it seems impute.QRILC requires a data matrix with samples in columns and features in rows. You could actually see it in the original code in the impute.QRILC function. I'd like to know if this is actually correct? I didn't see any transpose in your preprocess wrapper? Could author rectify the code and inform which is the correct protocol?
Many thanks