Hi all,
I am trying to augment the available sequences for a handful of specific vertebrate/mammalian proteins and my idea was to use 'diamond blastx' to blast fastq data from the VGP / Tree of Life raw reads.
I've seen the darwintreeoflife.data repo, which says it's discontinued, and this seems to be the one containing more up to date information (up to current month). Is there a way to get a long list of http bam or cram URLs for all the vertebrates/mammalian genomes in the Tree of Life project? E.g.
Something equivalent to the "*data.tsv" files in darwintreeoflife.data but up-to-date with current freshly generated data. Thanks in advance.
find darwintreeoflife.data/ -name "*data.tsv" | sort -V | xargs cat | grep -e 'bam$' -e 'cram$'
Hi all,
I am trying to augment the available sequences for a handful of specific vertebrate/mammalian proteins and my idea was to use 'diamond blastx' to blast fastq data from the VGP / Tree of Life raw reads.
I've seen the darwintreeoflife.data repo, which says it's discontinued, and this seems to be the one containing more up to date information (up to current month). Is there a way to get a long list of http bam or cram URLs for all the vertebrates/mammalian genomes in the Tree of Life project? E.g.
Something equivalent to the "*data.tsv" files in darwintreeoflife.data but up-to-date with current freshly generated data. Thanks in advance.