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Log

Generated with: git log --date=short --pretty=format:"* %ad ==> %s ([%h](https://github.com/SynapseWeb/Reconstruct/commit/%H))"

  • 2018-04-19 ==> This version reads the traces from the XML but scaling isn't right yet. (fa1ea83)
  • 2018-04-19 ==> Added additional printing for contours. (7d8bf04)
  • 2018-04-19 ==> Java: Modified SectionClass to detect both images and traces. (dd345d4)
  • 2018-04-18 ==> Added code to save and load tracings in BezierTracing. (215bcc4)
  • 2018-04-18 ==> Commented out debug printing during mouse dragging. (6a54711)
  • 2018-04-18 ==> BezierTracing: Allow Bezier handles to have different lengths. (ff2132b)
  • 2018-04-18 ==> Bezier: Factored "is_closed" from smooth_segment_handles function. (4d99a0e)
  • 2018-04-17 ==> Added an option (now default) to align handles (not perfect yet) (f625c70)
  • 2018-04-17 ==> Added the Single Cubic Bezier Conrol image to the introduction (45238f4)
  • 2018-04-17 ==> Added a Bezier modification example. (7f7efaa)
  • 2018-04-17 ==> Added an animation to show correction of trace with Bezier Curves. (b0e6fa9)
  • 2018-04-17 ==> Added a single Cubic Bezier Control point example. (81a66df)
  • 2018-04-17 ==> Added comparison between Polygon and Bezier Tracing methods (03bfed7)
  • 2018-04-17 ==> Added a 9 point comparison between a Bezier Curve and a Polygon. (2f8902c)
  • 2018-04-16 ==> Updated the log.md file. (bad10f6)
  • 2018-04-16 ==> Added usage description for BezierTracing.jar (1151d06)
  • 2018-04-16 ==> Updated the makefile to generate SHA1 sum for BezierTracing.jar (8017315)
  • 2018-04-16 ==> Updated README.md to show Java Bezier Tracing Demonstration (d662a0d)
  • 2018-04-16 ==> Added "TraceRound.gif" to demonstrate the Experimental Java Interface (daaa3a3)
  • 2018-04-16 ==> Added BezierTracing.java and .jar (uses Bezier Curves for tracing). (45e457d)
  • 2018-04-14 ==> Attempt to escape git log special characters (5528dcf)
  • 2018-04-14 ==> Updated the log file with Friday's commits. (7b0efd9)
  • 2018-04-14 ==> Updated the instructions for the current multiple section version. (11d863d)
  • 2018-04-14 ==> Added the round version of cell_slice_032.jpg to replace the oval. (cbde528)
  • 2018-04-14 ==> Moved the stretched version of cell_slice_032 to cell_slice_032s. (c956d34)
  • 2018-04-14 ==> This version supports separate traces for each section. (bc7e276)
  • 2018-04-13 ==> Moved the drawing code (paint_section) into SectionClass. (a70cc95)
  • 2018-04-13 ==> Removed a lot of unused code. (a6a002e)
  • 2018-04-13 ==> Disabled much of old direct image reading code (source only update). (53ea2b0)
  • 2018-04-13 ==> Moved the images into the sections (without removing from series yet). (8e7b4f3)
  • 2018-04-13 ==> Very minor change to load image file names in the series (not in main). (81b8002)
  • 2018-04-13 ==> Added support for home key to reset scales and centering. (91e7f25)
  • 2018-04-13 ==> Changed cursor to better match Reconstruct (source only update). (4b6f9bd)
  • 2018-04-13 ==> Reversed the sense of the mouse wheel to match Reconstruct.exe (756429b)
  • 2018-04-12 ==> Moved a lot of code from Reconstruct.java into SeriesClass.java. (6c51ec2)
  • 2018-04-12 ==> Began moving drawing from Reconstruct to Sections. (6dc3ddf)
  • 2018-04-12 ==> The previous log had been clipped on right hand side (terminal width) (bdefec5)
  • 2018-04-12 ==> Added links to commits in the log file for easier browsing. (d04f60c)
  • 2018-04-12 ==> Experiment with adding links to log file. (4e83099)
  • 2018-04-12 ==> Updated documentation. (d1e45f1)
  • 2018-04-12 ==> Changed Java name from "Development" to "Experimental". (40f7e72)
  • 2018-04-12 ==> Updated the log file with recent commits. (71727d7)
  • 2018-04-12 ==> Updated readme to contain a link to Java version with sha1sum. (8a0f00c)
  • 2018-04-11 ==> Commented out printing and decoupled scroll_wheel_position in draw. (238b0a0)
  • 2018-04-11 ==> This version can scroll through a stack of images (loads all at once). (7ea2584)
  • 2018-04-11 ==> Added code to get absolute image paths from section files. (39252a6)
  • 2018-04-11 ==> Added code to find the Image file names in section files in a series. (28c5bcb)
  • 2018-04-11 ==> Replaced longer document element references with shorter ones. (0d4f2f4)
  • 2018-04-11 ==> Added the jshell_setup file for debugging via jshell. (8ab7a4e)
  • 2018-04-11 ==> First attempts to pull specific data from XML document (index). (e54dcaa)
  • 2018-04-11 ==> Cleaned up a few imports and commented code. (2cef415)
  • 2018-04-11 ==> Fixed the last of the warnings by converting StringBufferInputStream (c6fe361)
  • 2018-04-11 ==> Modified makefile to suppress warnings for test code. (cb02122)
  • 2018-04-11 ==> Replaced object.<KEY_CODE> with class.<KEY_CODE> to suppress warnings. (4e508fa)
  • 2018-04-11 ==> Removed casts since type information now comes from templated list. (5a23b88)
  • 2018-04-11 ==> Added private static final long serialVersionUID = 1L; for warnings. (38ba0ef)
  • 2018-04-11 ==> Minor modifications to reduce warning messages about templated types. (c9817d1)
  • 2018-04-11 ==> Merge branch 'master' of https://github.com/SynapseWeb/Reconstruct (2661b3d)
  • 2018-04-11 ==> Reversed a few of the features of drawing mode and movement mode. (47d2710)
  • 2018-04-11 ==> Reversed a few of the features of drawing mode and movement mode. (3b6e56f)
  • 2018-04-10 ==> Moved much functionality from Reconstruct.java into SeriesClass.java. (92f196d)
  • 2018-04-10 ==> Added a stub section class named SectionClass. (c80ae1a)
  • 2018-04-10 ==> Added a stub SeriesClass.java file to represent a series. (78147ca)
  • 2018-04-10 ==> Pulled the XML parsing out of Reconstruct.java into XML_Parsing.java (a742e68)
  • 2018-04-10 ==> Removed lots of commented debugging code and added node value output. (06eb4c9)
  • 2018-04-10 ==> Filtered nodes for type = Node.ELEMENT_NODE seems to give proper results (60c880e)
  • 2018-04-10 ==> Attempting to read the Document returned by the XML parser. (fd65719)
  • 2018-04-09 ==> Isolated the dump_doc functionality to be used for testing. (8db17ab)
  • 2018-04-09 ==> Added right click to switch drawing modes. Preparing for series scroll. (2cb979c)
  • 2018-04-08 ==> Added basic parsing of section files (in addition to series files). (8416dc5)
  • 2018-04-08 ==> Updated to use a better regular expression for finding any_name.digits (906abf4)
  • 2018-04-08 ==> Added more proper filtering for section files. (1205861)
  • 2018-04-07 ==> Added code to search for section files starting with the series file name. (524a3ee)
  • 2018-04-07 ==> Added code to read, parse, and dump an XML Series file. (df97070)
  • 2018-04-07 ==> Added basic XML parsing of a series file. No data extracted yet. (934581e)
  • 2018-04-06 ==> Require GTK 3.0 (f6cd931)
  • 2018-04-06 ==> Merge branch 'master' of /home/bobkuczewski/proj/Reconstruct/src/bundle.dat (4c58a57)
  • 2018-04-06 ==> Added series and section XML files to test data. (4606ddc)
  • 2018-04-04 ==> PyGTK3: More attempts to draw images with cairo / PyGTK 3 (330b7fd)
  • 2018-04-04 ==> PyGtk: Commented attempts to scale only part of the image. (ae99fa1)
  • 2018-04-03 ==> 1.2.0.6: Attempted hide/unhide contours with the Control-E key (not working) (fb52a02)
  • 2018-04-03 ==> Trying to figure out where the traces (contours?) are stored. (c9cc7fd)
  • 2018-04-03 ==> Discovered that fflush is needed to see printf output in Windows. (506e5e7)
  • 2018-04-03 ==> Feature: Hide/Unhide all traces without picking a domain (1.2.0.5) (67dcd8d)
  • 2018-04-02 ==> Changed to the copyright symbol (requires python3). (c1924a2)
  • 2018-04-02 ==> Added code to set angle and line width in the debug menu. (8bfb34f)
  • 2018-04-02 ==> Renamed the "awesome" and "cool" actions to "tools" and "status" (47ddd51)
  • 2018-04-02 ==> Restored the "awesome" and "cool" check box connections for testing. (fbb52c3)
  • 2018-04-02 ==> Added some debugging code to help understand the callback parameters (5a756ea)
  • 2018-04-02 ==> PyGTK3: Added stub callbacks to all menu items. Removed demo code. (2f764f6)
  • 2018-04-02 ==> PyGTK3: Added most of the remaining menus. Some deeper ones not implemented yet. (4c39250)
  • 2018-04-02 ==> PyGTK3: Began adding actual Reconstruct Menus (90ac9be)
  • 2018-04-02 ==> Added some customizations to bring it closer to other versions. (81eabe6)
  • 2018-04-02 ==> Added a Python3 GTK example with XML Menu Definition (fbdf355)
  • 2018-03-31 ==> PyGObject: Added menus from the python_gtk version. (30eae9c)
  • 2018-03-31 ==> Minor changes to app_window.py so everything runs - but does nothing new (438ec28)
  • 2018-03-31 ==> Added app_window.py from the python_gtk version and imported (e8ddff4)
  • 2018-03-30 ==> PyGtk: Added test image (test.png) (e5abd31)
  • 2018-03-30 ==> PyGObject: Object oriented example (2b217de)
  • 2018-03-30 ==> Slightly modified example from the tutorial (362927b)
  • 2018-03-30 ==> Added a PyGObject version based on GTK 3.0 (ad02db4)
  • 2018-03-30 ==> Added more file types to the binary and text modes of .gitattributes (727ecd4)
  • 2018-03-30 ==> Normalize line endings to be LF in the databse per GitHub article (02fc513)
  • 2018-03-30 ==> Added .gitattributes file to specify binary and text files (c3f369d)
  • 2018-03-30 ==> Merge branch 'master' of Reconstruct/bundle.dat (6f868bc)
  • 2018-03-30 ==> Added code to use help files (.chm) in location of Reconstruct.exe (509a708)
  • 2018-03-29 ==> Added the Bezier Curve and Grease Pencil images to the README (56741a8)
  • 2018-03-29 ==> Added Blender_Image_Sequence.gif showing Bezier Curves and Grease Pencil (615a772)
  • 2018-03-28 ==> 1.2.0.3: Added JPEG support by manually rebuilding the GBM code with "ijg" (6614141)
  • 2018-03-28 ==> Migrating from reconstruct_min_ok.rc to reconstruct.rc (1.2.0.2) (7d970dd)
  • 2018-03-28 ==> Added comments back into reconstruct_min_ok.rc (c8e6354)
  • 2018-03-27 ==> Added SHA1sum link to Development Download (70477dd)
  • 2018-03-27 ==> Added makefile itself as a dependency for most targets. (f9defe9)
  • 2018-03-27 ==> Added a sha1sum of the executable to the makefile and the repository. (6b76b87)
  • 2018-03-27 ==> Increased version number from 1.2.0.0 to 1.2.0.1 (33265ea)
  • 2018-03-27 ==> Renamed makefile_raw to makefile (and makefile to makefile_borland) (188d3ae)
  • 2018-03-27 ==> Updated makefiles to build the gbm library as needed in ./gbm (19987e9)
  • 2018-03-27 ==> Added GBMLIB to makefile_raw but doesn't build yet. (5c2b976)
  • 2018-03-27 ==> Updated the original 64-bit Reconstruct link to show 1.1.0.1 (2237d96)
  • 2018-03-27 ==> Update ReadMe to include a link to the latest development version. (9804245)
  • 2018-03-24 ==> Display Help Files by launching a process: hh file.chm (4913d35)
  • 2018-03-23 ==> Added the Windows Compiled Help Files (.chm) (8a212d6)
  • 2018-03-23 ==> Rename the original "Reconstruct.exe" to "Reconstruct_1100.exe". (8b5ed0a)
  • 2018-03-23 ==> Changed version to 1.2.0.0 (63a632d)
  • 2018-03-23 ==> Version: 1.1.0.1 - First functional MinGW version (without help) (aba2a5c)
  • 2018-03-22 ==> Added the commit hash to the end of each commit line (7334d20)
  • 2018-03-22 ==> Improved the subheader of the log file. (0402fd4)
  • 2018-03-22 ==> Automate with: git log --date=short --pretty=format:"* %ad ==> %s" (bbfb64d)
  • 2018-03-22 ==> Update Wish_List.md (5f7366c)
  • 2018-03-21 ==> Merge branch 'master' of gitlab.snl.salk.edu:Reconstruct/Reconstruct (9290407)
  • 2018-03-21 ==> First version to run (but not yet usable) (9fb8b3a)
  • 2018-03-21 ==> First version to run (but not yet usable) (11500ea)
  • 2018-03-19 ==> Merge branch 'master' of https://github.com/SynapseWeb/Reconstruct (950c9c7)
  • 2018-03-16 ==> Python: Image scaling works, but can be slow for high zoom. (ca85b2f)
  • 2018-03-16 ==> Python: Change "widget" to "drawing_area" to improve clarity of code. (64000d3)
  • 2018-03-16 ==> Python Version: Began adding drawing back into Reconstruct.py (216c5cb)
  • 2018-03-16 ==> Added all top-level menus with stubs (submenus not added yet). (e032312)
  • 2018-03-16 ==> Updated title bar and top level menus. Removed more simulation code. (3681ece)
  • 2018-03-16 ==> Added a stub 2D simulation just to get it to run without errors. (626396e)
  • 2018-03-16 ==> Renamed gui.py to Reconstruct.py (abf23f9)
  • 2018-03-16 ==> Started with gui.py and app_window.py from Framework_Zero source files. (d8d32ff)
  • 2018-03-14 ==> Added a better image for the home page. (b765f74)
  • 2018-03-14 ==> Added the brainto3d.jpg image from SynapseWeb site. (1d8c9d4)
  • 2018-03-14 ==> Added the actual logo file for the front page. (8d7bdfb)
  • 2018-03-14 ==> Reformatted the main page and added a link to a logo (1c1f634)
  • 2018-03-14 ==> Updated the README.md file to better match the current SynapseWeb page. (17df5df)
  • 2018-03-14 ==> Update Log.md (cefe24b)
  • 2018-03-14 ==> Update README.md (7680104)
  • 2018-03-14 ==> Added GitHub Notes to front page of Reconstruct repository. (8881484)
  • 2018-03-14 ==> Added an experiments/documents/github section for GitHub Settings (e57fc2e)
  • 2018-03-14 ==> Added support for multiple images as a plain Java array. (871ae1c)
  • 2018-03-14 ==> Added a define of JPEG to force building the JPEG code. (d10cb2d)
  • 2018-03-14 ==> Modified the gbm makefile "clean" option to remove binaries. (a9947bb)
  • 2018-03-14 ==> Added all of the GBM (Generalized Bit Map) files ... may need for TIFF (28ce8d6)
  • 2018-03-14 ==> Merge branch 'master' of https://github.com/SynapseWeb/Reconstruct (40aab36)
  • 2018-03-14 ==> Disabled execute permission from source and image files. (f9e6925)
  • 2018-03-14 ==> Updated with the 2008 Wish List (57a8002)
  • 2018-03-13 ==> Added several test images from the MCell "Organelle" model. (7153c88)
  • 2018-03-13 ==> Added newline between entries to keep separate. (031bc8b)
  • 2018-03-13 ==> Update Log.md (435f342)
  • 2018-03-13 ==> Added links to experimental versions (ff8a028)
  • 2018-03-13 ==> Added a log file to keep a running track of changes (f020823)
  • 2018-03-13 ==> Created "Wish_List.md" to keep requests together with the code (e7e6247)
  • 2018-03-13 ==> Moved all of the previous top-level files into the source directory. (075001d)
  • 2018-03-13 ==> Added notes from Parker 2017 PDF (df3837c)
  • 2018-03-13 ==> Update Notes.md (a2ae6d5)
  • 2018-02-28 ==> Added "Use" note for "Center Drawing" mode in documentation. (b672acf)
  • 2018-02-28 ==> Updated the modes to better handle the center drawing mode. (3a65eb4)
  • 2018-02-28 ==> Improved cursor by centering at origin and then translating (d406f3e)
  • 2018-02-28 ==> Added Center Drawing mode and attempted cursor improvements (af86d7b)
  • 2018-02-27 ==> Added some instructions to the Java version. (b5df3fc)
  • 2018-02-27 ==> Merge branch 'experiments' of https://github.com/SynapseWeb/Reconstruct into experiments (743a2e1)
  • 2018-02-27 ==> Added some updates to the readme files, and moved old to history.md. (190a093)
  • 2018-02-27 ==> Added Reconstruct.jar to the git repository to make it easier to use. (3f06ea0)
  • 2018-02-27 ==> Implemented space bar for switching between move and draw modes. (bb0874f)
  • 2018-02-27 ==> Used the "both" custom cursor as the default for moving. (5cfded7)
  • 2018-02-27 ==> Used cursor shape to indicate move (hand) or draw (crosshair) modes. (b5feffa)
  • 2018-02-27 ==> Attached the File/Add menu to the Series/Import/Images... menu. (24dfa2d)
  • 2018-02-27 ==> Added Reconstruct Menus (almost all) (121bbf7)
  • 2018-02-27 ==> Copied "ZoomPanDraw.java" to "Reconstruct.java" and changed title. (7b0333d)
  • 2018-02-27 ==> Update Notes.md (286f16c)
  • 2018-02-27 ==> Update Notes.md (7556f7f)
  • 2018-02-27 ==> Update Notes.md (e466213)
  • 2018-02-27 ==> Update Notes.md (8d5fd7d)
  • 2018-02-27 ==> Added a Notes.md file to the experiments directory. (ee8ce5c)
  • 2018-02-27 ==> Added a Notes.md file to test whether GitHub will display. (a69c2dc)
  • 2018-02-26 ==> Added overview images for different experimental subprojects. (98ebf36)
  • 2018-02-26 ==> Minor improvements to the java experiments readme file. (0418847)
  • 2018-02-26 ==> Changed image reference in the java README.md file. (772aeb7)
  • 2018-02-26 ==> Updating README.md files. (0347d4a)
  • 2018-02-26 ==> Added a readme file for the Reconstruct experiments section. (0ef2e0d)
  • 2018-02-26 ==> Added a file chooser dialog box to allow opening a file. (2755f22)
  • 2018-02-26 ==> Added a screenshot and updated makefile to not delete all png files. (3089968)
  • 2018-02-26 ==> Added a java version built over the weekend. (f9a6c81)
  • 2018-02-23 ==> Added a new line to separate the OpenGL Sample image from text. (93ff732)
  • 2018-02-23 ==> Added some of the images from recent work. (d382811)
  • 2018-02-22 ==> Added the organelle model images used for the initial demonstration. (cb11adf)
  • 2018-02-22 ==> Added an image of the OpenGLTest along with a README.md for the project. (f9d10f2)
  • 2018-02-22 ==> Added OpenGLTest.exe and its sha1sum. (14e82ad)
  • 2018-02-22 ==> Added the Object Tracer for Blender in a new "experiments" branch. (7e72bfb)
  • 2015-08-05 ==> Update README.md (760d1e3)
  • 2015-08-05 ==> initial commit (a269533)
  • 2015-08-05 ==> Initial commit (4365cca)