diff --git a/_pkgdown.yml b/_pkgdown.yml index f8d980c5..a1463294 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -271,11 +271,19 @@ reference: End-to-end pipeline entry points. Each takes one or more S4 input classes and returns a SumStats, FineMappingResult, TwasWeights collection, or a tabular summary. + `ctwasPipeline` is also exposed as four chainable steps + (`assembleCtwasInputs` → `estCtwasParam` → `screenCtwasRegions` + → `finemapCtwasRegions`) for users who want to override estimated + priors or run only part of the pipeline. contents: - causalInferencePipeline - colocboostPipeline - colocPipeline - ctwasPipeline + - assembleCtwasInputs + - estCtwasParam + - screenCtwasRegions + - finemapCtwasRegions - fineMappingPipeline - mashPipeline - qtlEnrichmentPipeline