gmsvtoolkit_tutorials/Dockerfile at main · SCECcode/gmsvtoolkit_tutorials · GitHub

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#
# Build an Ubuntu installation of gmsvtoolkit
#
FROM ubuntu:jammy
LABEL org.opencontainers.image.authors="fsilva@usc.edu"

ARG DEBIAN_FRONTEND=noninteractive
ENV TZ=America/Los_Angeles

RUN apt-get update && apt-get -y upgrade \
  && apt-get install -y --no-install-recommends \
    git \
    wget \
    vim \
    jupyter \
    build-essential \
    ca-certificates \
    libfftw3-dev \
    libfftw3-mpi-dev \
    libopenmpi-dev \
    gfortran \
    && rm -rf /var/lib/apt/lists/*

RUN ln -s /usr/bin/python3 /usr/bin/python

# Define Build and runtime arguments
# These accept userid and groupid from the command line
#ARG APP_UNAME
#ARG APP_GRPNAME
#ARG APP_UID
#ARG APP_GID
#ARG BDATE

ENV APP_UNAME=scecuser \
APP_GRPNAME=scec \
APP_UID=1000 \
APP_GID=20 \
BDATE=20260714 \
CONDA_PLUGINS_AUTO_ACCEPT_TOS=true

# Added explicit HOME environment variable
ENV HOME=/home/${APP_UNAME}
ENV USER=${APP_UNAME}
ENV NB_UID=${APP_UID}

# Retrieve the userid and groupid from the args so
# Define these parameters to support building and deploying on EC2 so user is not root
# and for building the model and adding the correct date into the label
RUN echo $APP_UNAME $APP_GRPNAME $APP_UID $APP_GID $BDATE

# Setup Owners
# Group add duplicates "staff" so just continue if it doesn't work
RUN groupadd -f --non-unique --gid $APP_GID $APP_GRPNAME
RUN useradd -ms /bin/bash -g $APP_GRPNAME --uid $APP_UID $APP_UNAME

# Added steps to manage home directory permissions
RUN mkdir -p $HOME/.local \
    && chown -R $APP_UID:$APP_GID $HOME \
    && chmod -R 755 $HOME

# Define interactive user
USER ${APP_UNAME}

# Move to the user directory where the gmsvtoolkit is installed and built
ENV PATH="/home/${APP_UNAME}/miniconda3/bin:${PATH}"
ARG PATH="/home/${APP_UNAME}/miniconda3/bin:${PATH}"

WORKDIR /home/${APP_UNAME}

RUN ARCH=$(uname -m) \
    && if [ "$ARCH" = "x86_64" ]; then \
        wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O /tmp/miniconda.sh; \
    elif [ "$ARCH" = "aarch64" ]; then \
        wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-aarch64.sh -O /tmp/miniconda.sh; \
    else \
        echo "Unsupported architecture: $ARCH" && exit 1; \
    fi \
    && mkdir -p /home/${APP_UNAME}/.conda \
    && bash /tmp/miniconda.sh -b \
    && rm -f /tmp/miniconda.sh \
    && echo "Running $(conda --version)" \
    && conda update conda \
    && conda create -n gmsvtoolkit_env \
    && conda init bash

RUN echo 'conda activate gmsvtoolkit_env' >> /home/${APP_UNAME}/.bashrc \
    && bash /home/${APP_UNAME}/.bashrc \
    && conda install python=3.10 pip numpy notebook jupyterlab numba matplotlib pyproj scipy

# Get a copy of the gmsvtoolkit_tutorials repo
WORKDIR /home/${APP_UNAME}
RUN git clone https://github.com/SCECcode/gmsvtoolkit_tutorials.git

# Move to the user directory where the gmsvtoolkit is installed and built
WORKDIR /home/${APP_UNAME}
RUN git clone https://github.com/SCECcode/gmsvtoolkit.git

WORKDIR /home/${APP_UNAME}/gmsvtoolkit/gmsvtoolkit/src
RUN make -f makefile

# Setup GMSVtoolkit path
ENV PYTHONPATH="$PYTHONPATH:/home/${APP_UNAME}/gmsvtoolkit/gmsvtoolkit"
ENV PATH="$PATH:/home/$APP_UNAME/gmsvtoolkit/gmsvtoolkit/src/gp/bin:/home/$APP_UNAME/gmsvtoolkit/gmsvtoolkit/src/ucb/bin:/home/${APP_UNAME}/gmsvtoolkit/gmsvtoolkit/src/usgs/bin"
ENV GMSVTOOLKIT_DIR="/home/${APP_UNAME}/gmsvtoolkit/gmsvtoolkit"

# Define file input/output mounted disk
#
VOLUME /home/${APP_UNAME}/target
WORKDIR /home/${APP_UNAME}/target

#
# The .bashrc and .bash_profile will Define ENV variables
#
#
# Add metadata to dockerfile using labels
LABEL "org.scec.project"="GMSVToolkit"
LABEL org.scec.responsible_person="Fabio Silva"
LABEL org.scec.primary_contact="fsilva@usc.edu"
LABEL version="${BDATE}"

# Create interactive entry point
ENTRYPOINT ["/usr/bin/jupyter","notebook","--ip=0.0.0.0","--notebook-dir=/home/scecuser/gmsvtoolkit_tutorials/notebooks","--allow-root","--no-browser"]
#CMD ["/bin/bash"]