Issue #13 persists in CopywriteR 2.14.1 (Bioconductor)

[jdm204]

Hi, thanks for the package!

I get the
Error in [<-.data.frame(tmp, , "off.target", value = c(96715069L, : replacement has 4 rows, data has 5

The preferable way to solve this issue is by installing the newest CopywriteR version using
Bioconductor.

issue that's referenced in the README. I have four tumour samples all corresponding to the same matched control so I'm not sure I could avoid having more comparisons than samples!

[PeeperLab2]

Hi, Thank you for using CopywriteR. There are 2 options to simply solve this: 1) Make 5 comparison. All 4 samples versus your control and also once your control to itself. 2) Run all samples (including your control) to itself. In later steps you can subtract the control sample from your tumor samples. Btw it might also be a good additional check to see your reference samples is really normal (without large genomic aberrations) as an additional control. Good luck and feel free to email I case of further questions. Best Oscar On 12 Mar 2019, at 16:59, Jamie Matthews <notifications@github.com<mailto:notifications@github.com>> wrote: Hi, thanks for the package! I get the Error in [<-.data.frame(tmp, , "off.target", value = c(96715069L, : replacement has 4 rows, data has 5 The preferable way to solve this issue is by installing the newest CopywriteR version using Bioconductor. issue that's referenced in the README. I have four tumour samples all corresponding to the same matched control so I'm not sure I could avoid having more comparisons than samples! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#27>, or mute the thread<https://github.com/notifications/unsubscribe-auth/AH9-xB_kG4FmgRC_SnxkjtpCR19ZXLjjks5vV87TgaJpZM4brPHD>.