Skip to content

cannot demultiplex #3

@dridk

Description

@dridk

Hi, I don't understand what is wrong ...

I have a fastq file with the following sequences. (My barcode is under bracket):

@MN00591:192:000H332YK:1:11102:20930:2477 1:N:0:1
GCCCCCAAAATCAGCGAAATGGGCGCCATTGGTGATGACACCAGGCATCAGAATAAATGTTGTCGGCGAGATATTTGTCGGTCCCAGACTTTCGCTGAACGGCCACGGAGATAGGGCTAGGAGTAACCAGAATGGAGAACGC  [ATATCATTAACAGAG]  GGTACGCTCATCAGAATTAACC
+
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF

My barcode file contains the barcode :

#filename,#index1,#index2
A11,ATATCATTAACAGAG,  
H10,ATTAATAGTGGTATG,

But the following command keep creating 0 bytes files.

defq -i file.fastq -o demux_out_dir -s index.csv -f .fastq -z 1

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions