Skip to content

The tepid-discovery program reported an error, how can i solve this error? #22

Description

@wrn2333

(TEPID) ruoruo@DESKTOP-5SC16P5:/mnt/d/tepid-discover$ tepid-discover -p 16 -c XXX.bam -s XXX.split.bam -n XXX -t TE.bed
Processing XXX
Running paired-end mode
Estimating mean insert size and coverage
Warning: coverage may not be sufficiently high to reliably discover polymorphic TE insertions
mean insert size = 356 bp, standard deviation = 67 bp
coverage = 1x
read length = 143 bp
Processing split reads
Finding discordant reads
Processing TE annotation
Finding deletions
***** WARNING: File /tmp/pybedtools.Ny7kTr.tmp has inconsistent naming convention for record:
contig_100 278 341

***** WARNING: File /tmp/pybedtools.Ny7kTr.tmp has inconsistent naming convention for record:
contig_100 278 341

Finding insertions
Error: no reads intersecting TEs found

How could I solve it

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions