diff --git a/CMake/ITKSetPython3Vars.cmake b/CMake/ITKSetPython3Vars.cmake
index 4a396cc07a6..061fde1476e 100644
--- a/CMake/ITKSetPython3Vars.cmake
+++ b/CMake/ITKSetPython3Vars.cmake
@@ -109,6 +109,7 @@ else()
     set(
       _python_find_components
       Interpreter
+      Development.Module
       Development.SABIModule
     )
   else()
@@ -195,26 +196,11 @@ else()
   endif()
 
   # If a specific Python3_EXECUTABLE is provided by the user, try to infer
-  # the corresponding Python3_ROOT_DIR for Unix/macOS/Linux so CMake's
-  # FindPython3 locates the matching installation or virtual environment.
-  # This is especially important for virtualenv/venv/conda environments.
-  if(
-    DEFINED
-      Python3_EXECUTABLE
-    AND
-      NOT
-        DEFINED
-          Python3_ROOT_DIR
-    AND
-      (
-        UNIX
-        OR
-          APPLE
-      )
-    AND
-      NOT
-        WIN32
-  )
+  # the corresponding Python3_ROOT_DIR so CMake's FindPython3 locates the
+  # matching installation or virtual environment.
+  # This is especially important for virtualenv/venv/conda environments
+  # and on Windows where FindPython3 may otherwise pick the wrong installation.
+  if(DEFINED Python3_EXECUTABLE AND NOT DEFINED Python3_ROOT_DIR)
     # First, try sys.prefix from the provided interpreter (works for venv/conda)
     execute_process(
       COMMAND
diff --git a/Modules/Core/Common/src/CMakeLists.txt b/Modules/Core/Common/src/CMakeLists.txt
index 59f4d0a2c9f..22573b3ea70 100644
--- a/Modules/Core/Common/src/CMakeLists.txt
+++ b/Modules/Core/Common/src/CMakeLists.txt
@@ -159,12 +159,17 @@ set(
 )
 
 if(ITK_WRAP_PYTHON)
+  if(ITK_USE_PYTHON_LIMITED_API AND TARGET Python3::SABIModule)
+    set(_itk_python_target Python3::SABIModule)
+  else()
+    set(_itk_python_target Python3::Module)
+  endif()
   list(APPEND ITKCommon_SRCS itkPyCommand.cxx)
   set_source_files_properties(
     itkPyCommand.cxx
     PROPERTIES
       INCLUDE_DIRECTORIES
-        "$<TARGET_PROPERTY:Python3::Module,INTERFACE_INCLUDE_DIRECTORIES>"
+        "$<TARGET_PROPERTY:${_itk_python_target},INTERFACE_INCLUDE_DIRECTORIES>"
   )
 endif()
 
@@ -255,7 +260,10 @@ if(UNIX)
   endif()
 endif()
 if(ITK_WRAP_PYTHON)
-  target_link_libraries(ITKCommon PRIVATE Python3::Module)
+  target_link_libraries(ITKCommon PRIVATE ${_itk_python_target})
+  if(MSVC)
+    target_link_directories(ITKCommon PRIVATE ${Python3_LIBRARY_DIRS})
+  endif()
 endif()
 
 if(ITK_USE_TBB)
diff --git a/Wrapping/macro_files/itk_end_wrap_module.cmake b/Wrapping/macro_files/itk_end_wrap_module.cmake
index bb7288d3760..bfb53dd9796 100644
--- a/Wrapping/macro_files/itk_end_wrap_module.cmake
+++ b/Wrapping/macro_files/itk_end_wrap_module.cmake
@@ -527,14 +527,16 @@ ${DO_NOT_WAIT_FOR_THREADS_CALLS}
       )
     else()
       if(MSVC)
-        # Disables 'conversion from 'type1' to 'type2', possible loss of data warnings
+        # /wd4244: Disables 'conversion from 'type1' to 'type2', possible loss of data warnings
+        # /wd4996: Disables deprecated declaration warnings in generated wrapper code
         set_target_properties(
           ${lib}
           PROPERTIES
             COMPILE_FLAGS
-              "/wd4244"
+              "/wd4244 /wd4996"
         )
       endif()
+      target_link_directories(${lib} PUBLIC ${Python3_LIBRARY_DIRS})
     endif()
 
     # Link the modules together