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SpatialData.plot

R-universe

Visualization capabilities for SpatialData object elements from the spatialdataR: an R interface to Python's spatialdata framework (Marconato et al. (2024)).

DEMO

Resources

Installation

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
    
# install the development version from GitHub
BiocManager::install("HelenaLC/spatialdataR")
BiocManager::install("HelenaLC/SpatialData.plot")

Quick Start

library(spatialdataR)
zs <- file.path("extdata", "blobs.zarr")
zs <- system.file(zs, package="spatialdataR")
(sd <- readSpatialData(zs))

plotSpatialData() +
  plotImage(sd) +
  plotLabel(sd, a=0.8) +
  plotShape(sd, fill="pink") +
  plotPoint(sd, col="genes", size=1.2)