Visualization capabilities for SpatialData object elements
from the spatialdataR: an R interface to Python's
spatialdata framework
(Marconato et al. (2024)).
- SpatialData class documentation.
- SpatialData.demo: Biotechnology workflows.
- SpatialData.data: Example
SpatialDatasets.
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
# install the development version from GitHub
BiocManager::install("HelenaLC/spatialdataR")
BiocManager::install("HelenaLC/SpatialData.plot")library(spatialdataR)
zs <- file.path("extdata", "blobs.zarr")
zs <- system.file(zs, package="spatialdataR")
(sd <- readSpatialData(zs))
plotSpatialData() +
plotImage(sd) +
plotLabel(sd, a=0.8) +
plotShape(sd, fill="pink") +
plotPoint(sd, col="genes", size=1.2)