Undefined function 'computeAveLogLikelihood' for input arguments of type 'int32'.

[ulloaa]

Hello,

I followed instructions for installation but I have the following error. Could you please clarify whether computeAveLogLikelihood was supposed to have been compiled to mex? Thanks!

---

cd informME/src/bash_src/informME_run/main
./main.sh
Processing normal...
Error in MCS for phenotype toy_normal at location: chr1/bp9001-12000 with error:
Error in MCS for phenotype toy_normal at location: chr1/bp3001-6000 with error:
Undefined function 'computeAveLogLikelihood' for input arguments of type 'int32'.

Error in objFnToMinimize (line 65)
aveLogLikelihood = computeAveLogLikelihood(An,Cn,newMatrixVec,CpGstart,CpGend);

Error in init (line 44)
f1 = feval(fcn,data,x);

Error in mcs (line 248)
[f0,istar,ncall1] = init(fcn,data,x0,l,L,n);

Error in estimateParams (line 99)
[thetabest,fbest,thetamin,fmi,ncloc,flag] = mcs('feval',...

Error in estParamsForChr (line 216)
regionStruct = estimateParams(locationPathName,prefix,...Undefined function 'computeAveLogLikelihood' for input arguments of type 'int32'.

Error in objFnToMinimize (line 65)
aveLogLikelihood = computeAveLogLikelihood(An,Cn,newMatrixVec,CpGstart,CpGend);

Error in init (line 44)
f1 = feval(fcn,data,x);

Error in mcs (line 248)
[f0,istar,ncall1] = init(fcn,data,x0,l,L,n);

Error in estimateParams (line 99)
[thetabest,fbest,thetamin,fmi,ncloc,flag] = mcs('feval',...

E

[GarrettJenkinson]

Yes it should have a compiled mex binary if the install went correctly. Can you verify your installation as described here in the wiki:

https://github.com/GarrettJenkinson/informME/wiki/Testing%20Your%20Installation

A common problem in compiling is ensuring that your version of gcc and matlab are compatible:

https://www.mathworks.com/support/requirements/previous-releases.html