key file not getting copied to tmp/sppIDer/working

[shbrainard]

I ran the command for combining ref genomes and get the error:

docker run \
--rm -it \
--mount type=bind,src=$(pwd),target=/tmp/sppIDer/working \
--user "$UID:$(id -g $USERNAME)" \
glbrc/sppider \
  combineRefGenomes.py --out combined-genomes.fasta --key KEY.txt
Traceback (most recent call last):
  File "combineRefGenomes.py", line 33, in <module>
    list = open(workingDir + listName, 'r')
IOError: [Errno 2] No such file or directory: '/tmp/sppIDer/working/KEY.txt'

I can't seem to get this container running independently so I can log in and see what actually exists inside of it. Any suggestions for what's going wrong?