From d883e95621d52db001091e801233d236a97b4e0c Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Tue, 24 Feb 2026 17:08:04 +0200 Subject: [PATCH 01/50] privacy: Disable Sentry geolocation (IP collection) for GDPR compliance --- start.py | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/start.py b/start.py index 888faab..3e84deb 100644 --- a/start.py +++ b/start.py @@ -49,6 +49,8 @@ def scrub_dict(data): # Scrub user context if "user" in event: scrub_dict(event["user"]) + # Explicitly remove IP address to disable geolocation (GDPR) + event["user"].pop("ip_address", None) # Scrub breadcrumbs if "breadcrumbs" in event: @@ -71,8 +73,8 @@ def scrub_dict(data): sentry_sdk.init( dsn=Config.SENTRY_DSN, traces_sample_rate=Config.SENTRY_TRACES_SAMPLE_RATE, - # Add data like request headers and IP for users - send_default_pii=True, + # Disable default PII collection (IP, headers, cookies) for GDPR compliance + send_default_pii=False, # Scrub sensitive data before sending before_send=before_send, ) From 3663cb31c6c130a0bede691d806256265de482fa Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Tue, 24 Feb 2026 17:25:49 +0200 Subject: [PATCH 02/50] privacy: Aggressively clear IP addresses from Sentry events for GDPR --- start.py | 29 ++++++++++++++++++++++------- 1 file changed, 22 insertions(+), 7 deletions(-) diff --git a/start.py b/start.py index 3e84deb..abc4192 100644 --- a/start.py +++ b/start.py @@ -38,19 +38,34 @@ def scrub_dict(data): if isinstance(item, dict): scrub_dict(item) - # Scrub request data + # Scrub request data (including IP headers) if "request" in event: scrub_dict(event["request"]) - + if "headers" in event["request"]: + headers = event["request"]["headers"] + # Remove common IP headers + for ip_header in ["X-Forwarded-For", "X-Real-Ip", "True-Client-Ip", "Cf-Connecting-Ip"]: + if ip_header in headers: + headers[ip_header] = "[Filtered]" + # also check lowercase since headers are often lowercase + if ip_header.lower() in headers: + headers[ip_header.lower()] = "[Filtered]" + + # Sometimes IP is in env + if "env" in event["request"] and "REMOTE_ADDR" in event["request"]["env"]: + event["request"]["env"]["REMOTE_ADDR"] = "[Filtered]" + # Scrub extra context if "extra" in event: scrub_dict(event["extra"]) - # Scrub user context - if "user" in event: - scrub_dict(event["user"]) - # Explicitly remove IP address to disable geolocation (GDPR) - event["user"].pop("ip_address", None) + # Aggressively clear user IP + if "user" not in event or event["user"] is None: + event["user"] = {} + + # Explicitly set IP to a generic value so Sentry doesn't try to auto-fill it + event["user"]["ip_address"] = "0.0.0.0" + scrub_dict(event["user"]) # Scrub breadcrumbs if "breadcrumbs" in event: From 8f360edfc3a33893c6dc6db7b40cac678a65d981 Mon Sep 17 00:00:00 2001 From: Nikolaos Sokos Diamantopoulos Date: Mon, 9 Mar 2026 14:29:40 +0200 Subject: [PATCH 03/50] feat: in-app scheduler implementation using apscheduler and pymongo --- Dockerfile.cacher | 2 +- README.md | 54 ++-------------- apps/scheduler.py | 76 ++++++++++++++++++++++ apps/updater.py | 143 ++++++++++++++++++++++++++++++++++++++++++ docker-compose.yml | 1 + pyproject.toml | 1 + tests/test_updater.py | 127 +++++++++++++++++++++++++++++++++++++ uv.lock | 69 +++++++++++++++++++- 8 files changed, 421 insertions(+), 52 deletions(-) create mode 100644 apps/scheduler.py create mode 100644 apps/updater.py create mode 100644 tests/test_updater.py diff --git a/Dockerfile.cacher b/Dockerfile.cacher index c90ccd9..9c744d8 100644 --- a/Dockerfile.cacher +++ b/Dockerfile.cacher @@ -11,4 +11,4 @@ COPY apps ./apps/ # Place executables in the environment at the front of the path ENV PATH="/appli/.venv/bin:$PATH" -CMD ["python", "cache.py"] +CMD ["python", "apps/scheduler.py"] diff --git a/README.md b/README.md index 2a43a38..3b4107c 100644 --- a/README.md +++ b/README.md @@ -64,14 +64,11 @@ Following implementation requires MongoDB v4.2 or higher. docker start fdsnws-availability-cacher ``` - To automate cache rebuilding process, add following line to `cron`: - ```bash - # Rebuild FDSNWS-Availability restriction information cache daily at 3:00 AM - 0 3 * * * docker restart fdsnws-availability-cacher + docker start fdsnws-availability-cacher ``` - It will harvest and overwrite the restricted information stored in Redis instance. + With the current configuration, the `fdsnws-availability-cacher` container runs a continuous scheduler (`apps/scheduler.py`). This scheduler automatically handles cache rebuilding every day at 3:00 AM. It will harvest and overwrite the restricted information stored in the Redis instance without requiring host-level cronjobs. 1. Materialized view 1. Initial build @@ -88,52 +85,13 @@ Following implementation requires MongoDB v4.2 or higher. 1. Daily appension - To automate availability information appension, add following line to `cron`: - - ```bash - 0 6 * * * cd ~/ws-availability/views && mongosh -u USERNAME -p PASSWORD --authenticationDatabase wfrepo main.js > /dev/null 2>&1 - ``` - - It will go throught the documents in `daily_streams` and `c_segments` from last day, extract availability information and append it to the `availability` materialized view. If additional parameters are not provided, script processes data from last day: - - ```bash - # Script started on 2023-02-24 - $ mongosh -u USERNAME -p PASSWORD --authenticationDatabase wfrepo main.js - Processing WFCatalog entries using networks: '^.*$', stations: '^.*$', start: '2023-03-23', end: '2023-03-24' completed! - ``` + To automate availability information appension, the `fdsnws-availability-cacher` container automatically executes the update logic every day at 6:00 AM. + It will go through the documents in `daily_streams` and `c_segments` from the last day, extract availability information, and append it to the `availability` materialized view. + Because this runs via the container's scheduler, no host-level interference is required. 1. Back-processing - Processing can be also executed on a predefined subset of data using `networks`, `stations`, `start` and `end` parameters. - - ```bash - # Last week - $ mongosh -u USERNAME -p PASSWORD --authenticationDatabase wfrepo --eval "daysBack=7;" main.js - Processing WFCatalog entries using networks: '^.*$', stations: '^.*$', start: '2023-03-17', end: '2023-03-24' completed! - - # January 2023 - $ mongosh -u USERNAME -p PASSWORD --authenticationDatabase wfrepo --eval "start='2023-01-01'; end='2023-01-31'" main.js - Processing WFCatalog entries using networks: '^.*$', stations: '^.*$', start: '2023-01-01', end: '2023-01-31' completed! - - # NL.HGN data between December 2022 and January 2023 - $ mongosh -u USERNAME -p PASSWORD --authenticationDatabase wfrepo --eval "networks='NL'; stations='HGN'; start='2022-12-01'; end='2023-01-31'" main.js - Processing WFCatalog entries using networks: '^NL$', stations: '^HGN$', start: '2022-12-01', end: '2023-01-31' completed! - - # You can also use regular expressiosn for `networks` and `stations` params - # Please refer to [docs](https://www.mongodb.com/docs/manual/reference/operator/query/regex/) for details - - # Stations from NL network matching `G*4` template with timespan from 2023-03-01 till 2023-03-02 - $ mongosh -u USERNAME -p PASSWORD --authenticationDatabase wfrepo --eval "networks='NL'; stations='G.*4'; start='2023-03-01'; end='2023-03-02'" main.js - Processing WFCatalog entries using networks: '^NL$', stations: '^G.*4$', start: '2023-03-01', end: '2023-03-02' completed! - - # Stations from `NL` or `NA` networks with station codes `HGN` or `SABA` and timespan from 2023-03-01 till 2023-03-02 - $ mongosh -u USERNAME -p PASSWORD --authenticationDatabase wfrepo --eval "networks='NL|NA'; stations='HGN|SABA'; start='2023-03-01'; end='2023-03-02'" main.js - Processing WFCatalog entries using networks: '^NL|NA$', stations: '^HGN|SABA$', start: '2023-03-01', end: '2023-03-02' completed! - - # All stations from networks `NL` and `NA` with timespan from 2023-03-01 till 2023-03-02 - $ mongosh -u jarek -p password123 --authenticationDatabase wfrepo --eval "networks='NL|NA'; start='2023-03-01'; end='2023-03-02'" main.js - Processing WFCatalog entries using networks: '^NL|NA$', stations: '^.*$', start: '2023-03-01', end: '2023-03-02' completed! - ``` + Processing can be also executed on a predefined subset of data using `networks`, `stations`, `start`, and `end` parameters by executing the updater logic directly within the python environment of the `cacher` container, bypassing the scheduler triggers. 1. Indexes diff --git a/apps/scheduler.py b/apps/scheduler.py new file mode 100644 index 0000000..15e4219 --- /dev/null +++ b/apps/scheduler.py @@ -0,0 +1,76 @@ +import logging +import os +import smtplib +from apscheduler.schedulers.blocking import BlockingScheduler +from apscheduler.triggers.cron import CronTrigger + +from apps.updater import AvailabilityUpdater +from apps.wfcatalog_client import get_db_client +from cache import Cache + +# Set up logging for the scheduler +logging.basicConfig( + handlers=[logging.StreamHandler()], + level=logging.INFO, + format="[%(asctime)s] [SCHEDULER] [%(levelname)s] %(message)s", + datefmt="%Y-%m-%d %H:%M:%S +0000", +) +logger = logging.getLogger(__name__) + + +def run_inventory_cache(): + """Builds the inventory cache stored in Redis.""" + logger.info("Starting scheduled task: Rebuild Inventory Cache") + try: + cache = Cache() + cache.build_cache() + except Exception as e: + logger.exception("Failed to build inventory cache: %s", e) + + +def run_materialized_view_update(): + """Updates the MongoDB materialized view from daily_streams.""" + logger.info("Starting scheduled task: Update Availability Materialized View") + try: + # We initialized the updater with our global DB client + db_client = get_db_client() + # Ensure we use the correct database name passed via environment, defaulting to 'wfrepo' + db_name = os.getenv("MONGODB_NAME", "wfrepo") + db = db_client.get_database(db_name) + + updater = AvailabilityUpdater(db) + + # We run the updates using the default (last 1 day) behavior, matching the former bash script logic + updater.run_updates() + + except Exception as e: + logger.exception("Failed to update availability materialized view: %s", e) + + +if __name__ == "__main__": + logger.info("Initializing APScheduler...") + scheduler = BlockingScheduler() + + # Schedule cache rebuilding every day at 3:00 AM (Equivalent to 0 3 * * * cron) + scheduler.add_job( + run_inventory_cache, + CronTrigger(hour=3, minute=0), + id="rebuild_inventory_cache_job", + name="Rebuilds the cache mapping seed IDs to restriction data from FDSNWS Station", + replace_existing=True, + ) + + # Schedule DB view update every day at 6:00 AM (Equivalent to 0 6 * * * cron) + scheduler.add_job( + run_materialized_view_update, + CronTrigger(hour=6, minute=0), + id="update_availability_view_job", + name="Builds the daily_streams aggregation into the availability materialized view", + replace_existing=True, + ) + + logger.info("Scheduler started successfully. Waiting for jobs to execute...") + try: + scheduler.start() + except (KeyboardInterrupt, SystemExit): + logger.info("Scheduler stopped.") diff --git a/apps/updater.py b/apps/updater.py new file mode 100644 index 0000000..7bac453 --- /dev/null +++ b/apps/updater.py @@ -0,0 +1,143 @@ +import logging +from datetime import datetime, timedelta +from typing import Optional + +from pymongo import MongoClient +from pymongo.database import Database + +logger = logging.getLogger(__name__) + + +class AvailabilityUpdater: + def __init__(self, db: Database): + self.db = db + + def update_availability_daily( + self, + networks: str, + stations: str, + start_date: datetime, + end_date: datetime, + ): + """ + Equivalent to `updateAvailabilityDaily` in views/main.js + """ + pipeline = [ + { + "$match": { + "net": {"$regex": networks}, + "sta": {"$regex": stations}, + "ts": {"$gte": start_date}, + "te": {"$lte": end_date}, + "avail": {"$gte": 100}, + } + }, + { + "$group": { + "_id": "$_id", + "net": {"$first": "$net"}, + "sta": {"$first": "$sta"}, + "loc": {"$first": "$loc"}, + "cha": {"$first": "$cha"}, + "qlt": {"$first": "$qlt"}, + "srate": {"$first": {"$arrayElemAt": ["$srate", 0]}}, + "ts": {"$first": "$ts"}, + "te": {"$first": "$te"}, + "created": {"$first": "$created"}, + "restr": {"$first": "OPEN"}, + "count": {"$first": 1}, + } + }, + {"$merge": {"into": "availability", "on": "_id", "whenMatched": "replace"}}, + ] + + logger.info(f"Running daily update for net:{networks} sta:{stations} ts:{start_date} te:{end_date}") + self.db.daily_streams.aggregate(pipeline) + + def update_availability_continuous( + self, + networks: str, + stations: str, + start_date: datetime, + end_date: datetime, + ): + """ + Equivalent to `updateAvailabilityContinuous` in views/main.js + """ + pipeline = [ + { + "$match": { + "net": {"$regex": networks}, + "sta": {"$regex": stations}, + "ts": {"$gte": start_date}, + "te": {"$lte": end_date}, + "avail": {"$lt": 100}, + } + }, + { + "$lookup": { + "from": "c_segments", + "localField": "_id", + "foreignField": "streamId", + "as": "c_segments", + } + }, + {"$unwind": "$c_segments"}, + { + "$group": { + "_id": "$c_segments._id", + "net": {"$first": "$net"}, + "sta": {"$first": "$sta"}, + "loc": {"$first": "$loc"}, + "cha": {"$first": "$cha"}, + "qlt": {"$first": "$qlt"}, + "srate": {"$first": "$c_segments.srate"}, + "ts": {"$first": "$c_segments.ts"}, + "te": {"$first": "$c_segments.te"}, + "created": {"$first": "$created"}, + "restr": {"$first": "OPEN"}, + "count": {"$first": 1}, + } + }, + {"$merge": {"into": "availability", "on": "_id", "whenMatched": "replace"}}, + ] + + logger.info(f"Running continuous update for net:{networks} sta:{stations} ts:{start_date} te:{end_date}") + self.db.daily_streams.aggregate(pipeline) + + def run_updates( + self, + networks: str = "^.*$", + stations: str = "^.*$", + start_date: Optional[datetime] = None, + end_date: Optional[datetime] = None, + days_back: Optional[int] = None, + ): + """ + Main runner function replicating the logic at the bottom of main.js. + """ + now = datetime.utcnow() + if days_back is not None: + # Replicate getPastDate behavior (end_date isn't changed if daysBack is passed in JS script context, but we handle it uniformly) + # Actually, in JS: `if (typeof daysBack !== "undefined") ts = getPastDate(daysBack);` + # and te is kept as getPastDate(0) + target_start = now - timedelta(days=days_back) + start_date = datetime(target_start.year, target_start.month, target_start.day) + end_date = end_date or datetime(now.year, now.month, now.day) + else: + if start_date is None: + target_start = now - timedelta(days=1) + start_date = datetime(target_start.year, target_start.month, target_start.day) + if end_date is None: + end_date = datetime(now.year, now.month, now.day) + + logger.info( + f"Processing WFCatalog entries using networks: '{networks}', stations: '{stations}', start: '{start_date.isoformat()}', end: '{end_date.isoformat()}' started!" + ) + + self.update_availability_daily(networks, stations, start_date, end_date) + self.update_availability_continuous(networks, stations, start_date, end_date) + + logger.info( + f"Processing WFCatalog entries using networks: '{networks}', stations: '{stations}', start: '{start_date.isoformat()}', end: '{end_date.isoformat()}' completed!" + ) diff --git a/docker-compose.yml b/docker-compose.yml index 3430c42..b6e8141 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -11,6 +11,7 @@ services: build: context: ./ dockerfile: Dockerfile.cacher + restart: always container_name: fdsnws-availability-cacher network_mode: "host" environment: diff --git a/pyproject.toml b/pyproject.toml index 5ae418c..f1940d4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -18,6 +18,7 @@ dependencies = [ "pydantic>=2.0.0", "pydantic-settings>=2.12.0", "sentry-sdk[flask]>=2.0.0", + "apscheduler>=3.11.2", ] [dependency-groups] diff --git a/tests/test_updater.py b/tests/test_updater.py new file mode 100644 index 0000000..f6f3e87 --- /dev/null +++ b/tests/test_updater.py @@ -0,0 +1,127 @@ +import unittest +from datetime import datetime +from unittest.mock import MagicMock, call + +from apps.updater import AvailabilityUpdater + + +class TestAvailabilityUpdater(unittest.TestCase): + def setUp(self): + self.mock_db = MagicMock() + self.updater = AvailabilityUpdater(self.mock_db) + + def test_update_availability_daily_pipeline(self): + """ + Test that update_availability_daily calls aggregate with the correct pipeline. + """ + start_date = datetime(2023, 3, 23) + end_date = datetime(2023, 3, 24) + networks = "NL" + stations = "HGN" + + self.updater.update_availability_daily(networks, stations, start_date, end_date) + + # Retrieve the pipeline that was passed to aggregate + self.mock_db.daily_streams.aggregate.assert_called_once() + pipeline = self.mock_db.daily_streams.aggregate.call_args[0][0] + + # Verify pipeline structure exactly matches what we expect from main.js + expected_match = { + "$match": { + "net": {"$regex": networks}, + "sta": {"$regex": stations}, + "ts": {"$gte": start_date}, + "te": {"$lte": end_date}, + "avail": {"$gte": 100}, + } + } + self.assertEqual(pipeline[0], expected_match) + + expected_group = { + "$group": { + "_id": "$_id", + "net": {"$first": "$net"}, + "sta": {"$first": "$sta"}, + "loc": {"$first": "$loc"}, + "cha": {"$first": "$cha"}, + "qlt": {"$first": "$qlt"}, + "srate": {"$first": {"$arrayElemAt": ["$srate", 0]}}, + "ts": {"$first": "$ts"}, + "te": {"$first": "$te"}, + "created": {"$first": "$created"}, + "restr": {"$first": "OPEN"}, + "count": {"$first": 1}, + } + } + self.assertEqual(pipeline[1], expected_group) + + expected_merge = { + "$merge": {"into": "availability", "on": "_id", "whenMatched": "replace"} + } + self.assertEqual(pipeline[2], expected_merge) + + def test_update_availability_continuous_pipeline(self): + """ + Test that update_availability_continuous calls aggregate with the correct pipeline. + """ + start_date = datetime(2023, 1, 1) + end_date = datetime(2023, 2, 1) + networks = "^.*$" + stations = "^.*$" + + self.updater.update_availability_continuous(networks, stations, start_date, end_date) + + # Retrieve the pipeline that was passed to aggregate + self.mock_db.daily_streams.aggregate.assert_called_once() + pipeline = self.mock_db.daily_streams.aggregate.call_args[0][0] + + expected_match = { + "$match": { + "net": {"$regex": networks}, + "sta": {"$regex": stations}, + "ts": {"$gte": start_date}, + "te": {"$lte": end_date}, + "avail": {"$lt": 100}, + } + } + self.assertEqual(pipeline[0], expected_match) + + expected_lookup = { + "$lookup": { + "from": "c_segments", + "localField": "_id", + "foreignField": "streamId", + "as": "c_segments", + } + } + self.assertEqual(pipeline[1], expected_lookup) + + expected_unwind = {"$unwind": "$c_segments"} + self.assertEqual(pipeline[2], expected_unwind) + + expected_group = { + "$group": { + "_id": "$c_segments._id", + "net": {"$first": "$net"}, + 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specifier = "==4.4.4" }, { name = "requests", specifier = "==2.31.0" }, + { name = "sentry-sdk", extras = ["flask"], specifier = ">=2.0.0" }, ] [package.metadata.requires-dev] From ab27ff6d9598120c3c70772f0790d39247ee66ea Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Mon, 20 Apr 2026 15:38:05 +0300 Subject: [PATCH 04/50] feat(scheduler): add Sentry Cron monitoring to scheduled jobs --- apps/scheduler.py | 42 ++++++++++++++++++------ apps/sentry.py | 82 +++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 115 insertions(+), 9 deletions(-) create mode 100644 apps/sentry.py diff --git a/apps/scheduler.py b/apps/scheduler.py index 15e4219..7ebdce8 100644 --- a/apps/scheduler.py +++ b/apps/scheduler.py @@ -1,9 +1,11 @@ import logging import os -import smtplib + +import sentry_sdk from apscheduler.schedulers.blocking import BlockingScheduler from apscheduler.triggers.cron import CronTrigger +from apps.sentry import init_sentry from apps.updater import AvailabilityUpdater from apps.wfcatalog_client import get_db_client from cache import Cache @@ -18,37 +20,59 @@ logger = logging.getLogger(__name__) +@sentry_sdk.monitor(monitor_slug="rebuild-inventory-cache") def run_inventory_cache(): - """Builds the inventory cache stored in Redis.""" + """Builds the inventory cache stored in Redis. + + Wrapped with @sentry_sdk.monitor so that Sentry Crons tracks: + - When the job starts and finishes (check-in: IN_PROGRESS → OK) + - When the job fails (check-in: ERROR) with full exception details + - When the job never runs (check-in: MISSED) e.g. if the container goes down + """ logger.info("Starting scheduled task: Rebuild Inventory Cache") try: cache = Cache() cache.build_cache() + logger.info("Completed scheduled task: Rebuild Inventory Cache") except Exception as e: + sentry_sdk.capture_exception(e) logger.exception("Failed to build inventory cache: %s", e) + raise # Re-raise so the Sentry monitor registers this run as ERROR +@sentry_sdk.monitor(monitor_slug="update-availability-view") def run_materialized_view_update(): - """Updates the MongoDB materialized view from daily_streams.""" + """Updates the MongoDB materialized view from daily_streams. + + Wrapped with @sentry_sdk.monitor so that Sentry Crons tracks: + - When the job starts and finishes (check-in: IN_PROGRESS → OK) + - When the job fails (check-in: ERROR) with full exception details + - When the job never runs (check-in: MISSED) e.g. if the container goes down + """ logger.info("Starting scheduled task: Update Availability Materialized View") try: - # We initialized the updater with our global DB client db_client = get_db_client() - # Ensure we use the correct database name passed via environment, defaulting to 'wfrepo' db_name = os.getenv("MONGODB_NAME", "wfrepo") db = db_client.get_database(db_name) - + updater = AvailabilityUpdater(db) - - # We run the updates using the default (last 1 day) behavior, matching the former bash script logic + + # Run the updates using the default (last 1 day) behavior updater.run_updates() - + logger.info("Completed scheduled task: Update Availability Materialized View") except Exception as e: + sentry_sdk.capture_exception(e) logger.exception("Failed to update availability materialized view: %s", e) + raise # Re-raise so the Sentry monitor registers this run as ERROR if __name__ == "__main__": + # Initialize Sentry before starting the scheduler so all events are captured. + # Reuses the shared init_sentry() from apps/sentry.py (same as the API). + # No-op if SENTRY_DSN is not set. + init_sentry() logger.info("Initializing APScheduler...") + scheduler = BlockingScheduler() # Schedule cache rebuilding every day at 3:00 AM (Equivalent to 0 3 * * * cron) diff --git a/apps/sentry.py b/apps/sentry.py new file mode 100644 index 0000000..1444f0f --- /dev/null +++ b/apps/sentry.py @@ -0,0 +1,82 @@ +import sentry_sdk + +from config import Config + + +def before_send(event, hint): + """ + Scrub sensitive data from Sentry events before sending. + This prevents passwords, API keys, and other secrets from being exposed. + """ + sensitive_keys = { + "password", "passwd", "pwd", "secret", "api_key", "apikey", + "token", "auth", "authorization", "credentials", "private_key", + "access_token", "refresh_token", "session", "cookie" + } + + def scrub_dict(data): + """Recursively scrub sensitive data from dictionaries.""" + if not isinstance(data, dict): + return + + for key in list(data.keys()): + key_lower = str(key).lower() + if any(sensitive in key_lower for sensitive in sensitive_keys): + data[key] = "[Filtered]" + elif isinstance(data[key], dict): + scrub_dict(data[key]) + elif isinstance(data[key], list): + for item in data[key]: + if isinstance(item, dict): + scrub_dict(item) + + # Scrub request data (including IP headers) + if "request" in event: + scrub_dict(event["request"]) + if "headers" in event["request"]: + headers = event["request"]["headers"] + for ip_header in ["X-Forwarded-For", "X-Real-Ip", "True-Client-Ip", "Cf-Connecting-Ip"]: + if ip_header in headers: + headers[ip_header] = "[Filtered]" + if ip_header.lower() in headers: + headers[ip_header.lower()] = "[Filtered]" + + if "env" in event["request"] and "REMOTE_ADDR" in event["request"]["env"]: + event["request"]["env"]["REMOTE_ADDR"] = "[Filtered]" + + # Scrub extra context + if "extra" in event: + scrub_dict(event["extra"]) + + # Aggressively clear user IP + if "user" not in event or event["user"] is None: + event["user"] = {} + + event["user"]["ip_address"] = "0.0.0.0" + scrub_dict(event["user"]) + + # Scrub breadcrumbs + if "breadcrumbs" in event: + for breadcrumb in event["breadcrumbs"].get("values", []): + scrub_dict(breadcrumb) + + # Scrub local variables from stack traces + if "exception" in event: + for exception in event["exception"].get("values", []): + if "stacktrace" in exception: + for frame in exception["stacktrace"].get("frames", []): + if "vars" in frame: + scrub_dict(frame["vars"]) + + return event + + +def init_sentry(): + """Initialize Sentry SDK if SENTRY_DSN is configured.""" + if Config.SENTRY_DSN: + sentry_sdk.init( + dsn=Config.SENTRY_DSN, + traces_sample_rate=Config.SENTRY_TRACES_SAMPLE_RATE, + send_default_pii=False, + before_send=before_send, + ) From 7bb89ed9a732fff7254b6a7980c5c995cd038128 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Mon, 20 Apr 2026 18:01:30 +0300 Subject: [PATCH 05/50] fix(scheduler): set PYTHONPATH in Dockerfile.cacher to fix ModuleNotFoundError --- Dockerfile.cacher | 2 ++ 1 file changed, 2 insertions(+) diff --git a/Dockerfile.cacher b/Dockerfile.cacher index 9c744d8..9351234 100644 --- a/Dockerfile.cacher +++ b/Dockerfile.cacher @@ -10,5 +10,7 @@ COPY apps ./apps/ # Place executables in the environment at the front of the path ENV PATH="/appli/.venv/bin:$PATH" +# Set PYTHONPATH so 'from apps.sentry import ...' resolves correctly +ENV PYTHONPATH="/appli" CMD ["python", "apps/scheduler.py"] From 95738a34584b571e154af9b0c5e582ea52267a02 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Mon, 20 Apr 2026 18:03:39 +0300 Subject: [PATCH 06/50] test(scheduler): set inventory cache job to every minute for Sentry testing --- apps/scheduler.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/apps/scheduler.py b/apps/scheduler.py index 7ebdce8..eeec07d 100644 --- a/apps/scheduler.py +++ b/apps/scheduler.py @@ -75,10 +75,10 @@ def run_materialized_view_update(): scheduler = BlockingScheduler() - # Schedule cache rebuilding every day at 3:00 AM (Equivalent to 0 3 * * * cron) + # Schedule cache rebuilding every minute for testing Sentry Crons scheduler.add_job( run_inventory_cache, - CronTrigger(hour=3, minute=0), + CronTrigger(minute="*"), id="rebuild_inventory_cache_job", name="Rebuilds the cache mapping seed IDs to restriction data from FDSNWS Station", replace_existing=True, From 9d958168284176132c8d458d8262f902598da174 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Mon, 20 Apr 2026 18:05:15 +0300 Subject: [PATCH 07/50] fix(sentry): add enable_tracing for Cron monitoring, revert to production schedule --- apps/scheduler.py | 4 ++-- apps/sentry.py | 5 +++++ 2 files changed, 7 insertions(+), 2 deletions(-) diff --git a/apps/scheduler.py b/apps/scheduler.py index eeec07d..7ebdce8 100644 --- a/apps/scheduler.py +++ b/apps/scheduler.py @@ -75,10 +75,10 @@ def run_materialized_view_update(): scheduler = BlockingScheduler() - # Schedule cache rebuilding every minute for testing Sentry Crons + # Schedule cache rebuilding every day at 3:00 AM (Equivalent to 0 3 * * * cron) scheduler.add_job( run_inventory_cache, - CronTrigger(minute="*"), + CronTrigger(hour=3, minute=0), id="rebuild_inventory_cache_job", name="Rebuilds the cache mapping seed IDs to restriction data from FDSNWS Station", replace_existing=True, diff --git a/apps/sentry.py b/apps/sentry.py index 1444f0f..c6c5669 100644 --- a/apps/sentry.py +++ b/apps/sentry.py @@ -79,4 +79,9 @@ def init_sentry(): traces_sample_rate=Config.SENTRY_TRACES_SAMPLE_RATE, send_default_pii=False, before_send=before_send, + # Required for Sentry Cron monitoring (check-ins) + enable_tracing=True, ) + print(f"[SENTRY] Initialized. DSN={Config.SENTRY_DSN[:40]}...") + else: + print("[SENTRY] SENTRY_DSN not set — Sentry disabled.") From 14bfad8e6fa9398272f3e991cc772d7c8b392c06 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Mon, 20 Apr 2026 19:17:19 +0300 Subject: [PATCH 08/50] fix: use empty sets for seedIDs and downgrade cache miss to warning --- apps/restriction.py | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/apps/restriction.py b/apps/restriction.py index 9964aa3..fb17ecd 100644 --- a/apps/restriction.py +++ b/apps/restriction.py @@ -50,8 +50,8 @@ def __init__(self, host: str = "localhost", port: int = 6379, key: str = "invent global REDIS_POOL self._inv = {} - self._known_seedIDs = None - self._restricted_seedIDs = None + self._known_seedIDs = set() + self._restricted_seedIDs = set() if REDIS_POOL is None: REDIS_POOL = redis.ConnectionPool( @@ -79,8 +79,9 @@ def __init__(self, host: str = "localhost", port: int = 6379, key: str = "invent logging.info(f"Loaded inventory from cache...") return else: - logging.exception( - "Inventory information is not cached and needs to be rebuilt." + logging.warning( + "Inventory information is not cached and needs to be rebuilt. " + "Run the cacher container to populate the Redis inventory key." ) @property From c73e3e34d1c625f164fa41283657de984f929d90 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Mon, 20 Apr 2026 19:25:15 +0300 Subject: [PATCH 09/50] feat: run inventory cache and view update once on startup --- apps/scheduler.py | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/apps/scheduler.py b/apps/scheduler.py index 7ebdce8..235880f 100644 --- a/apps/scheduler.py +++ b/apps/scheduler.py @@ -93,6 +93,14 @@ def run_materialized_view_update(): replace_existing=True, ) + # Run jobs once on startup to ensure persistence/freshness after a restart + logger.info("Running initial startup tasks...") + try: + run_inventory_cache() + run_materialized_view_update() + except Exception as e: + logger.error("Initial startup tasks failed: %s", e) + logger.info("Scheduler started successfully. Waiting for jobs to execute...") try: scheduler.start() From 3b60b47d2d673c2e53a33b7f3ae5888517e89cd0 Mon Sep 17 00:00:00 2001 From: Nikolaos Sokos <48948314+NikolaosSokos@users.noreply.github.com> Date: Mon, 20 Apr 2026 19:41:56 +0300 Subject: [PATCH 10/50] fix: Upsert Sentry Crons monitors by passing monitor_config with Cron definitions --- apps/scheduler.py | 21 +++++++++++++++++++-- 1 file changed, 19 insertions(+), 2 deletions(-) diff --git a/apps/scheduler.py b/apps/scheduler.py index 235880f..d03bb88 100644 --- a/apps/scheduler.py +++ b/apps/scheduler.py @@ -20,7 +20,16 @@ logger = logging.getLogger(__name__) -@sentry_sdk.monitor(monitor_slug="rebuild-inventory-cache") +@sentry_sdk.monitor( + monitor_slug="rebuild-inventory-cache", + monitor_config={ + "schedule": {"type": "crontab", "value": "0 3 * * *"}, + "checkin_margin": 10, + "max_runtime": 60, + "timezone": "UTC", + }, +) + def run_inventory_cache(): """Builds the inventory cache stored in Redis. @@ -40,7 +49,15 @@ def run_inventory_cache(): raise # Re-raise so the Sentry monitor registers this run as ERROR -@sentry_sdk.monitor(monitor_slug="update-availability-view") +@sentry_sdk.monitor( + monitor_slug="update-availability-view", + monitor_config={ + "schedule": {"type": "crontab", "value": "0 6 * * *"}, + "checkin_margin": 10, + "max_runtime": 60, + "timezone": "UTC", + }, +) def run_materialized_view_update(): """Updates the MongoDB materialized view from daily_streams. From 8dcf9ae9f8757acb32e109b57c74af95f0a90369 Mon Sep 17 00:00:00 2001 From: Nikolaos Sokos <48948314+NikolaosSokos@users.noreply.github.com> Date: Tue, 21 Apr 2026 19:36:59 +0300 Subject: [PATCH 11/50] fix(#18): Allow MONGODB_AUTH_SOURCE to be explicit instead of tied to database name --- apps/settings.py | 2 ++ apps/wfcatalog_client.py | 2 +- config.py.sample | 3 +++ 3 files changed, 6 insertions(+), 1 deletion(-) diff --git a/apps/settings.py b/apps/settings.py index c61c30a..a28fd4c 100644 --- a/apps/settings.py +++ b/apps/settings.py @@ -18,6 +18,7 @@ class Settings(BaseSettings): mongodb_usr: str = Field("", alias="MONGODB_USR") mongodb_pwd: str = Field("", alias="MONGODB_PWD") mongodb_name: str = Field("wfrepo", alias="MONGODB_NAME") + mongodb_auth_source: str | None = Field(None, alias="MONGODB_AUTH_SOURCE") # FDSNWS-Station cache source fdsnws_station_url: str = Field("https://orfeus-eu.org/fdsnws/station/1/query", alias="FDSNWS_STATION_URL") @@ -63,6 +64,7 @@ def load_legacy_config(): "MONGODB_USR": getattr(Config, "MONGODB_USR", None), "MONGODB_PWD": getattr(Config, "MONGODB_PWD", None), "MONGODB_NAME": getattr(Config, "MONGODB_NAME", None), + "MONGODB_AUTH_SOURCE": getattr(Config, "MONGODB_AUTH_SOURCE", None), "FDSNWS_STATION_URL": getattr(Config, "FDSNWS_STATION_URL", None), "CACHE_HOST": getattr(Config, "CACHE_HOST", None), "CACHE_PORT": getattr(Config, "CACHE_PORT", None), diff --git a/apps/wfcatalog_client.py b/apps/wfcatalog_client.py index 35166ce..f5625dc 100644 --- a/apps/wfcatalog_client.py +++ b/apps/wfcatalog_client.py @@ -48,7 +48,7 @@ def get_db_client(): settings.mongodb_port, username=settings.mongodb_usr, password=settings.mongodb_pwd, - authSource=settings.mongodb_name, + authSource=settings.mongodb_auth_source or settings.mongodb_name, maxPoolSize=1, connect=False, directConnection=True, diff --git a/config.py.sample b/config.py.sample index dc482e7..88c9f33 100644 --- a/config.py.sample +++ b/config.py.sample @@ -18,6 +18,7 @@ class Config: MONGODB_USR = "" MONGODB_PWD = "" MONGODB_NAME = "wfrepo" + MONGODB_AUTH_SOURCE = None # FDSNWS-Station cache source FDSNWS_STATION_URL = "https://orfeus-eu.org/fdsnws/station/1/query" # Cache host (localhost or container name) @@ -33,6 +34,7 @@ class Config: MONGODB_USR = "" MONGODB_PWD = "" MONGODB_NAME = "wfrepo" + MONGODB_AUTH_SOURCE = None # FDSNWS-Station cache source FDSNWS_STATION_URL = "https://orfeus-eu.org/fdsnws/station/1/query" # Cache host (localhost or container name) @@ -48,6 +50,7 @@ class Config: MONGODB_USR = os.environ.get("MONGODB_USR") or MONGODB_USR MONGODB_PWD = os.environ.get("MONGODB_PWD") or MONGODB_PWD MONGODB_NAME = os.environ.get("MONGODB_NAME") or MONGODB_NAME + MONGODB_AUTH_SOURCE = os.environ.get("MONGODB_AUTH_SOURCE") or MONGODB_AUTH_SOURCE FDSNWS_STATION_URL = os.environ.get("FDSNWS_STATION_URL") or FDSNWS_STATION_URL CACHE_HOST = os.environ.get("CACHE_HOST") or CACHE_HOST CACHE_PORT = os.environ.get("CACHE_PORT") or CACHE_PORT From e41307d043fb9d9ee186fe5a8a669230aca328da Mon Sep 17 00:00:00 2001 From: Nikolaos Sokos <48948314+NikolaosSokos@users.noreply.github.com> Date: Tue, 21 Apr 2026 19:38:28 +0300 Subject: [PATCH 12/50] docs: Add MONGODB_AUTH_SOURCE to README.md --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index edb0a50..95fd6a7 100644 --- a/README.md +++ b/README.md @@ -24,6 +24,7 @@ Following implementation requires MongoDB v4.2 or higher. MONGODB_USR = "" #MongoDB user MONGODB_PWD = "" #MongoDB password MONGODB_NAME = "wfrepo" #MongoDB database name + MONGODB_AUTH_SOURCE = None #MongoDB authentication database. None falls back to database name FDSNWS_STATION_URL = "https://orfeus-eu.org/fdsnws/station/1/query" #FDSNWS-Station endpoint to harvest restriction information from CACHE_HOST = "localhost" #Cache host CACHE_PORT = 6379 #Cache port From a449f47184de39349b73ab362f39610607cb48c0 Mon Sep 17 00:00:00 2001 From: Nikolaos Sokos <48948314+NikolaosSokos@users.noreply.github.com> Date: Tue, 21 Apr 2026 19:40:56 +0300 Subject: [PATCH 13/50] test: Add tests for backward compatibility of MONGODB_AUTH_SOURCE --- tests/test_settings.py | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/tests/test_settings.py b/tests/test_settings.py index 7b81e74..77173cd 100644 --- a/tests/test_settings.py +++ b/tests/test_settings.py @@ -40,3 +40,30 @@ def test_production_explicit_override(self): del os.environ["RUNMODE"] del os.environ["MONGODB_HOST"] + + def test_auth_source_default_fallback(self): + """Test that missing MONGODB_AUTH_SOURCE defaults to None (backward compatibility)""" + if "MONGODB_AUTH_SOURCE" in os.environ: del os.environ["MONGODB_AUTH_SOURCE"] + + settings = Settings() + assert settings.mongodb_auth_source is None + assert settings.mongodb_name == "wfrepo" + + # Simulating the fallback logic used in wfcatalog_client + auth_source = settings.mongodb_auth_source or settings.mongodb_name + assert auth_source == "wfrepo" + + def test_auth_source_explicit_override(self): + """Test that explicit MONGODB_AUTH_SOURCE is respected""" + os.environ["MONGODB_AUTH_SOURCE"] = "admin" + os.environ["MONGODB_NAME"] = "wfrepo" + + settings = Settings() + assert settings.mongodb_auth_source == "admin" + + # Simulating the logic used in wfcatalog_client + auth_source = settings.mongodb_auth_source or settings.mongodb_name + assert auth_source == "admin" + + del os.environ["MONGODB_AUTH_SOURCE"] + del os.environ["MONGODB_NAME"] From f8fe83f8b6a6eb49166db0c8b072600fa555f53d Mon Sep 17 00:00:00 2001 From: Nikolaos Sokos <48948314+NikolaosSokos@users.noreply.github.com> Date: Tue, 21 Apr 2026 19:45:22 +0300 Subject: [PATCH 14/50] fix(query): Optimize MongoDB index usage implicitly by matching parameter order (#51) --- apps/wfcatalog_client.py | 26 ++++++++------------------ 1 file changed, 8 insertions(+), 18 deletions(-) diff --git a/apps/wfcatalog_client.py b/apps/wfcatalog_client.py index f5625dc..62fb6fe 100644 --- a/apps/wfcatalog_client.py +++ b/apps/wfcatalog_client.py @@ -88,29 +88,19 @@ def mongo_request(paramslist: list[dict]) -> tuple[list[dict], list[list[Any]]]: start, end = crop_datetimes(params) qry = {} if params["network"] != "*": - network = {"$in": params["network"].split(",")} - qry["net"] = network + qry["net"] = {"$in": params["network"].split(",")} if params["station"] != "*": - station = {"$in": params["station"].split(",")} - qry["sta"] = station + qry["sta"] = {"$in": params["station"].split(",")} if params["location"] != "*": - location = {"$in": params["location"].split(",")} - qry["loc"] = location + qry["loc"] = {"$in": params["location"].split(",")} if params["channel"] != "*": qry["cha"] = {"$in": params["channel"].split(",")} - if params["quality"] != "*": - quality = {"$in": params["quality"].split(",")} - qry["qlt"] = quality - if start is not None: - te = {"$gt": start} - qry["te"] = te if end is not None: - ts = {"$lt": end} - qry["ts"] = ts - - # if end: - # te = {"$lte": end} - # qry["te"] = te + qry["ts"] = {"$lt": end} + if start is not None: + qry["te"] = {"$gt": start} + if params["quality"] != "*": + qry["qlt"] = {"$in": params["quality"].split(",")} qries.append(qry) From 4d6c6821f381ad98ec5d020615b1f7397ecaa487 Mon Sep 17 00:00:00 2001 From: Nikolaos Sokos <48948314+NikolaosSokos@users.noreply.github.com> Date: Tue, 21 Apr 2026 19:48:02 +0300 Subject: [PATCH 15/50] feat(db): Automatically create MongoDB compound index on initialization --- README.md | 8 ++------ apps/wfcatalog_client.py | 13 ++++++++++++- 2 files changed, 14 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 95fd6a7..4b1faba 100644 --- a/README.md +++ b/README.md @@ -138,12 +138,8 @@ Following implementation requires MongoDB v4.2 or higher. 1. Indexes - It is highly suggested to create at least following index in the `availability` materialized view. First, login to your MongoDB instance using `mongosh` and then execute following commands: - - ```bash - use wfrepo; - db.availability.createIndex({ net: 1, sta: 1, loc: 1, cha: 1, ts: 1, te: 1 }) - ``` + The FDSNWS-Availability API automatically ensures the creation of an optimized compound index on the `availability` materialized view at startup `({ net: 1, sta: 1, loc: 1, cha: 1, ts: 1, te: 1 })`. + If you are experiencing slow queries, ensure this index has finished building in the background. 1. Validation diff --git a/apps/wfcatalog_client.py b/apps/wfcatalog_client.py index 62fb6fe..b6ba990 100644 --- a/apps/wfcatalog_client.py +++ b/apps/wfcatalog_client.py @@ -10,7 +10,7 @@ from fnmatch import fnmatch # from flask import current_app (Removed) from .redis_client import RedisClient -from pymongo import MongoClient +from pymongo import MongoClient, ASCENDING from datetime import datetime, timedelta from typing import Any @@ -55,6 +55,17 @@ def get_db_client(): retryReads=False, retryWrites=False ) + try: + db = DB_CLIENT.get_database(settings.mongodb_name) + db.availability.create_index( + [("net", ASCENDING), ("sta", ASCENDING), ("loc", ASCENDING), + ("cha", ASCENDING), ("ts", ASCENDING), ("te", ASCENDING)], + background=True + ) + logging.getLogger(__name__).info("Ensured MongoDB compound index is present on 'availability' collection.") + except Exception as e: + logging.getLogger(__name__).warning("Failed to verify/create MongoDB indexes: %s", e) + return DB_CLIENT def mongo_request(paramslist: list[dict]) -> tuple[list[dict], list[list[Any]]]: From 2179a8f7ccf88909676f7947bca1b52f4568ea91 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Thu, 7 May 2026 15:52:26 +0300 Subject: [PATCH 16/50] fix(issue-60): implement multi-layer memory exhaustion protection Changes: - Added Docker memory limits. - Externalized configuration. - Implemented Redis-powered breadth check. - Applied .limit() to MongoDB. - Added protection tests. - Updated .gitignore to exclude AI metadata and locks. --- .gitignore | 289 ++-- Dockerfile.cacher | 32 +- README.md | 756 +++++------ apps/data_access_layer.py | 7 +- apps/globals.py | 188 +-- apps/restriction.py | 324 ++--- apps/root.py | 5 +- apps/scheduler.py | 250 ++-- apps/sentry.py | 174 +-- apps/settings.py | 180 +-- apps/updater.py | 286 ++-- apps/wfcatalog_client.py | 19 +- config.py.sample | 140 +- docker-compose.yml | 133 +- pyproject.toml | 72 +- start.py | 288 ++-- tests/test_issue60_protection.py | 96 ++ tests/test_settings.py | 84 +- tests/test_updater.py | 254 ++-- uv.lock | 1954 --------------------------- ws-availability-issue60-briefing.md | 248 ++++ 21 files changed, 2101 insertions(+), 3678 deletions(-) create mode 100644 tests/test_issue60_protection.py delete mode 100644 uv.lock create mode 100644 ws-availability-issue60-briefing.md diff --git a/.gitignore b/.gitignore index 5d787a5..a9e8198 100644 --- a/.gitignore +++ b/.gitignore @@ -1,142 +1,147 @@ -# Config -config.py - -# Virtual environment -env/ - -# DB migrations -migrations/ - -# Byte-compiled / optimized / DLL files -__pycache__/ -*.py[cod] -*$py.class - -# C extensions -*.so - -# Distribution / packaging -.Python -build/ -develop-eggs/ -dist/ -downloads/ -eggs/ -.eggs/ -lib/ -lib64/ -parts/ -sdist/ -var/ -wheels/ -pip-wheel-metadata/ -share/python-wheels/ -*.egg-info/ -.installed.cfg -*.egg -MANIFEST - -# PyInstaller -# Usually these files are written by a python script from a template -# before PyInstaller builds the exe, so as to inject date/other infos into it. -*.manifest -*.spec - -# Installer logs -pip-log.txt -pip-delete-this-directory.txt - -# Unit test / coverage reports -htmlcov/ -.tox/ -.nox/ -.coverage -.coverage.* -.cache -nosetests.xml -coverage.xml -*.cover -.hypothesis/ -.pytest_cache/ - -# Translations -*.mo -*.pot - -# Django stuff: -*.log -local_settings.py -db.sqlite3 -db.sqlite3-journal - -# Flask stuff: -instance/ -.webassets-cache - -# Scrapy stuff: -.scrapy - -# Sphinx documentation -docs/_build/ - -# PyBuilder -target/ - -# Jupyter Notebook -.ipynb_checkpoints - -# IPython -profile_default/ -ipython_config.py - -# pyenv -.python-version - -# pipenv -# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. -# However, in case of collaboration, if having platform-specific dependencies or dependencies -# having no cross-platform support, pipenv may install dependencies that don't work, or not -# install all needed dependencies. -#Pipfile.lock - -# celery beat schedule file -celerybeat-schedule - -# SageMath parsed files -*.sage.py - -# Environments -.env -.venv -env/ -venv/ -ENV/ -env.bak/ -venv.bak/ - -# Spyder project settings -.spyderproject -.spyproject - -# Rope project settings -.ropeproject - -# mkdocs documentation -/site - -# mypy -.mypy_cache/ -.dmypy.json -dmypy.json - -# Pyre type checker - -# Local Documentation -HOWTO_ADD_DATA.md -REFACTORING_SUMMARY.md - -# Local Verification Scripts -tests/demonstrate_fusion.py -reproduce_data_wfcatalog.py -reproduce_on_server.py -debug_api_state.py +# Config +config.py + +# Virtual environment +env/ + +# DB migrations +migrations/ + +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +pip-wheel-metadata/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +.hypothesis/ +.pytest_cache/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# IPython +profile_default/ +ipython_config.py + +# pyenv +.python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +#Pipfile.lock + +# celery beat schedule file +celerybeat-schedule + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker + +# Local Documentation +HOWTO_ADD_DATA.md +REFACTORING_SUMMARY.md + +# Local Verification Scripts +tests/demonstrate_fusion.py +reproduce_data_wfcatalog.py +reproduce_on_server.py +debug_api_state.py + +# AI Agents & Tools +.agents/ +.gemini/ +uv.lock diff --git a/Dockerfile.cacher b/Dockerfile.cacher index 9351234..519e542 100644 --- a/Dockerfile.cacher +++ b/Dockerfile.cacher @@ -1,16 +1,16 @@ -FROM python:3.10-slim -COPY --from=ghcr.io/astral-sh/uv:latest /uv /bin/uv - -WORKDIR /appli -COPY pyproject.toml uv.lock ./ -RUN uv sync --frozen --no-dev --no-progress - -COPY cache.py config.py* ./ -COPY apps ./apps/ - -# Place executables in the environment at the front of the path -ENV PATH="/appli/.venv/bin:$PATH" -# Set PYTHONPATH so 'from apps.sentry import ...' resolves correctly -ENV PYTHONPATH="/appli" - -CMD ["python", "apps/scheduler.py"] +FROM python:3.10-slim +COPY --from=ghcr.io/astral-sh/uv:latest /uv /bin/uv + +WORKDIR /appli +COPY pyproject.toml uv.lock ./ +RUN uv sync --frozen --no-dev --no-progress + +COPY cache.py config.py* ./ +COPY apps ./apps/ + +# Place executables in the environment at the front of the path +ENV PATH="/appli/.venv/bin:$PATH" +# Set PYTHONPATH so 'from apps.sentry import ...' resolves correctly +ENV PYTHONPATH="/appli" + +CMD ["python", "apps/scheduler.py"] diff --git a/README.md b/README.md index 3b4107c..6050b1f 100644 --- a/README.md +++ b/README.md @@ -1,378 +1,378 @@ -# FDSNWS-Availability Deployment - -## Overview - -- WFCatalog DB (gray) - database used by the WFCatalog collector and API. -- FDSNWS-Availability API (blue) - Flask-based FDSNWS-Availability implementation. -- FDSNWS-Availability Cache (green) - Redis-based cache to store restriction information. -- FDSNWS-Availability Cacher (orange) - Python-based container to harvest and store restriction information. -- FDSNWS-Availability Update (purple) - JS script to fill the `availability` materialized view using WFCatalog `daily_streams` and `c_segments` collections. - -![FDSNWS-Availability deployment diagram](deployment.png) - -Following implementation requires MongoDB v4.2 or higher. - -## Deployment - -1. Clone the [https://github.com/EIDA/ws-availability] repository and go to its root -1. Copy `config.py.sample` to `config.py` and adjust it as needed (please notice there are two sections - `RUNMODE == "production"` and `RUNMODE == "test"`; for Docker deployment use the `production` section): - - ```bash - # WFCatalog MongoDB - MONGODB_HOST = "localhost" #MongoDB host - MONGODB_PORT = 27017 #MongoDB port - MONGODB_USR = "" #MongoDB user - MONGODB_PWD = "" #MongoDB password - MONGODB_NAME = "wfrepo" #MongoDB database name - FDSNWS_STATION_URL = "https://orfeus-eu.org/fdsnws/station/1/query" #FDSNWS-Station endpoint to harvest restriction information from - CACHE_HOST = "localhost" #Cache host - CACHE_PORT = 6379 #Cache port - CACHE_INVENTORY_KEY = "inventory" #Cache key for restriction information - CACHE_INVENTORY_PERIOD = 0 #Cache invalidation period for `inventory` key; 0 = never invalidate - CACHE_RESP_PERIOD = 1200 #Cache invalidation period for API response - ``` - -1. Build the containers: - - ```bash - docker-compose -p 'fdsnws-availability' up -d --no-deps --build - ``` - - When the Docker stack is deployed, you will see 3 containers running: - - ```bash - $ docker ps - CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES - 4e3dace01fb0 fdsnws-availability_api "/bin/bash -c 'gunic…" 10 seconds ago Up 5 seconds 0.0.0.0:9001->9001/tcp fdsnws-availability-api - 3c91e0d1c5e6 fdsnws-availability_cacher "/bin/bash -c 'pytho…" 10 seconds ago Up 5 seconds 0.0.0.0:11211->11211/tcp fdsnws-availability-cacher - d983e64d64a8 redis:7.0-alpine "docker-entrypoint.s…" 10 seconds ago Up 5 seconds 0.0.0.0:6379->6379/tcp fdsnws-availability-cache - ``` - - You can follow the `fdsnws-availability-cacher` container to see the status of restriction information harvesting: - - ```bash - $ docker logs --follow fdsnws-availability-cacher - [2023-01-11 09:47:38 +0000] [0] [INFO] Getting inventory from FDSNWS-Station... - [2023-01-11 09:47:39 +0000] [0] [INFO] Harvesting 33 from https://orfeus-eu.org/fdsnws/station/1/query?level=network: 2M,3T,6A... - #... - [2023-02-15 08:31:56 +0000] [0] [INFO] Completed caching inventory from FDSNWS-Station - ``` - - Once `fdsnws-availability-cacher` is completed, it will go down. Harvested information is stored in the Redis DB served by `fdsnws-availability-cache` container. To rebuild the cache, simply restart the container using: - - ```bash - docker start fdsnws-availability-cacher - ``` - - ```bash - docker start fdsnws-availability-cacher - ``` - - With the current configuration, the `fdsnws-availability-cacher` container runs a continuous scheduler (`apps/scheduler.py`). This scheduler automatically handles cache rebuilding every day at 3:00 AM. It will harvest and overwrite the restricted information stored in the Redis instance without requiring host-level cronjobs. - -1. Materialized view - 1. Initial build - - When the stack is initially deployed, the materialized view is not yet in place. To build it, issue the following command: - - ```bash - # Script started on 2023-02-24 - $ mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo --eval "daysBack=365" views/main.js - Processing WFCatalog entries using networks: '^.*$', stations: '^.*$', start: '2022-03-24', end: '2023-03-24' completed! - ``` - - It will go throught the documents in `daily_streams` and `c_segments` from last year, extract availability information and store it in the `availability` materialized view. - - 1. Daily appension - - To automate availability information appension, the `fdsnws-availability-cacher` container automatically executes the update logic every day at 6:00 AM. - It will go through the documents in `daily_streams` and `c_segments` from the last day, extract availability information, and append it to the `availability` materialized view. - Because this runs via the container's scheduler, no host-level interference is required. - - 1. Back-processing - - Processing can be also executed on a predefined subset of data using `networks`, `stations`, `start`, and `end` parameters by executing the updater logic directly within the python environment of the `cacher` container, bypassing the scheduler triggers. - - 1. Indexes - - It is highly suggested to create at least following index in the `availability` materialized view. First, login to your MongoDB instance using `mongosh` and then execute following commands: - - ```bash - use wfrepo; - db.availability.createIndex({ net: 1, sta: 1, loc: 1, cha: 1, ts: 1, te: 1 }) - ``` - -1. Validation - - Now it is time to check if everything is running (remember to change the `net` query parameter). API is exposed by default on port `9001`, let's try to get the landing page: - - ```bash - $ curl "127.0.0.1:9001" - - - - - - FDSNWS-Availability - - -

FDSNWS Availability Web Service

-

- The availability web service returns detailed time span information about - available time series data. Please refer to - http://www.fdsn.org/webservice - for a complete service description. -

- -

Available URLs

- - - ``` - - Get request to the `/extent` method: - - ```bash - $ curl "127.0.0.1:9001/extent?net=NA&start=2023-02-01" - #Network Station Location Channel Quality SampleRate Earliest Latest Updated TimeSpans Restriction - NA SABA BHE D 40.0 2023-02-01T00:00:00.000000Z 2023-02-14T00:00:00.000000Z 2023-02-14T07:41:14Z 1 OPEN - NA SABA BHN D 40.0 2023-02-01T00:00:00.000000Z 2023-02-14T00:00:00.000000Z 2023-02-14T07:42:07Z 1 OPEN - NA SABA BHZ D 40.0 2023-02-01T00:00:00.000000Z 2023-02-14T00:00:00.000000Z 2023-02-14T07:41:41Z 1 OPEN - # ... - ``` - - Get request to the `/query` method: - - ```bash - $ curl "127.0.0.1:9001/query?net=NA&start=2023-02-01" - #Network Station Location Channel Quality SampleRate Earliest Latest - NA SABA BHE D 40.0 2023-02-01T00:00:00.000000Z 2023-02-02T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-02T00:00:00.000000Z 2023-02-03T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-03T00:00:00.000000Z 2023-02-04T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-04T00:00:00.000000Z 2023-02-05T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-05T00:00:00.000000Z 2023-02-06T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-06T00:00:00.000000Z 2023-02-07T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-07T00:00:00.000000Z 2023-02-08T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-08T00:00:00.000000Z 2023-02-09T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-09T00:00:00.000000Z 2023-02-10T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-10T00:00:00.000000Z 2023-02-11T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-11T00:00:00.000000Z 2023-02-12T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-12T00:00:00.000000Z 2023-02-13T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-13T00:00:00.000000Z 2023-02-14T00:00:00.000000Z - ``` - -1. Reverse proxy example config - - An example of Apache reverse proxy config: - - ```bash - # FDSNWS-Availability (Docker) - - # in order to omit CORS error - Header add Access-Control-Allow-Origin "*" - - ProxyPass /fdsnws/availability/1 :9001 timeout=600 - ProxyPassReverse /fdsnws/availability/1 :9001 timeout=600 - ``` - -## Performance Tuning - -### Gunicorn Workers Configuration - -The number of Gunicorn workers directly affects how many concurrent requests your service can handle. The default configuration uses **1 worker** for maximum stability on resource-constrained servers. - -#### Current Configuration (docker-compose.yml) -```yaml -command: gunicorn --bind 0.0.0.0:9001 --workers 1 start:app -``` - -#### Adjusting Worker Count - -**For servers with limited resources or thread creation issues:** -```yaml -# Minimum configuration (most stable) -command: gunicorn --bind 0.0.0.0:9001 --workers 1 --timeout 600 start:app -``` - -**For servers with moderate resources:** -```yaml -# 2-3 workers (recommended for most deployments) -command: gunicorn --bind 0.0.0.0:9001 --workers 2 --timeout 600 start:app -``` - -**For high-performance servers:** -```yaml -# Formula: (2 × CPU cores) + 1 -# Example for 4-core server: --workers 9 -command: gunicorn --bind 0.0.0.0:9001 --workers 4 --timeout 600 start:app -``` - -#### Important Notes - -1. **Each worker is a separate process** with its own memory footprint -2. **More workers ≠ always better** - too many workers can exhaust system resources -3. **Monitor for errors** after increasing workers: - ```bash - docker logs -f fdsnws-availability-api - # Watch for "pthread_create failed" or similar errors - ``` - -4. **Resource usage check:** - ```bash - docker stats fdsnws-availability-api - # If CPU < 80% and memory available, you can add more workers - ``` - -### MongoDB Connection Pool - -The MongoDB connection pool is configured in `apps/wfcatalog_client.py`: - -```python -maxPoolSize=1 # Connections per worker -``` - -#### How It Works - -- **Each Gunicorn worker** has its own MongoDB client -- **Total connections** = `workers × maxPoolSize` -- **Example:** 2 workers × 1 pool = 2 total MongoDB connections - -#### When to Adjust - -**Keep `maxPoolSize=1` if:** -- ✅ Using sync workers (default Gunicorn configuration) -- ✅ Each worker handles one request at a time -- ✅ Server has resource constraints - -**Increase `maxPoolSize` only if:** -- Using async workers (gevent/eventlet) -- Using threading within workers -- MongoDB is a bottleneck (check with profiling) - -#### Example Configurations - -| Workers | maxPoolSize | Total Connections | Use Case | -|---------|-------------|-------------------|----------| -| 1 | 1 | 1 | Minimal (default) | -| 2 | 1 | 2 | Recommended | -| 4 | 1 | 4 | High performance | -| 2 | 5 | 10 | Async workers | - -### Thread Limiting (Important!) - -The configuration includes thread limits to prevent `pthread_create failed` errors on restricted servers: - -```yaml -environment: - OPENBLAS_NUM_THREADS: 1 - MKL_NUM_THREADS: 1 - NUMEXPR_NUM_THREADS: 1 - OMP_NUM_THREADS: 1 -``` - -**Do not remove these** unless you're certain your server can handle multiple threads per process. These prevent NumPy/ObsPy from spawning excessive threads. - -### Troubleshooting - -**Problem:** Service crashes with "pthread_create failed" -- **Solution:** Reduce workers to 1, keep thread limits in place - -**Problem:** Slow response times under load -- **Solution:** Increase workers (if resources allow), monitor with `docker stats` - -**Problem:** High memory usage -- **Solution:** Reduce workers, check for memory leaks with profiling - -**Problem:** MongoDB connection errors -- **Solution:** Check total connections (workers × maxPoolSize) against MongoDB limits - -### Performance Monitoring - -See `tests/performance/` for profiling and benchmarking tools: - -```bash -# Quick performance test -bash tests/performance/quick_test.sh - -# Detailed profiling -python tests/performance/profiler.py - -# Load testing -locust -f tests/performance/locustfile.py --host=http://localhost:9001 -``` - -For more details, see [Performance Analysis Plan](tests/performance/README.md). - -## Running in development environment - -1. Go to the root directory. -1. Copy `config.py.sample` to `config.py` and adjust it as needed. -1. Create the virtual environment: - - ```bash - python3 -m venv env - ``` - -1. Activate the virtual environment: - - ```bash - source env/bin/activate - ``` - -1. Install the dependencies: - - ```bash - pip install -r requirements.txt - ``` - -1. Create Redis instance (mandatory for WFCatalog-based deployment): - - ```bash - docker run -p 6379:6379 --name cache -d redis:7.0-alpine redis-server --save 20 1 --loglevel warning - ``` - -1. Build the cache: - - ```bash - python3 cache.py - ``` - -1. Now you can either: - 1. Run it: - - ```bash - RUNMODE=test FLASK_APP=start.py flask run - - # Or with gunicorn: - RUNMODE=test gunicorn --workers 2 --timeout 60 --bind 0.0.0.0:9001 start:app - ``` - - 1. Debug it in VS Code (F5) after selecting "Launch (Flask)" config. - -## RUNMODE builtin values - -- `production` -- `test` - -## Tests - -Tests can be executed from the respository root using following command: - -```bash -PYTHONPATH=./apps/ python3 -m unittest discover tests/ -``` - -## Ideas for improvements - -1. Move restriction information from Redis cache directly to the `db.availability` materialized view. This would imply modifying the `views/main.js` script with code harvesting this information directly from the FDSNWS-Station instance. -1. Modify underlying RESIF code from logic based on list of arrays to list of objects/dicts which is native MongoDB response to prevent the object/dict to array casting. - -## References - -This repository has been forked from [gitlab.com/resif/ws-availability](https://gitlab.com/resif/ws-availability), special thanks to our colleagues at RESIF for sharing their implementation of the FDSNWS-Availability web service. 💐 +# FDSNWS-Availability Deployment + +## Overview + +- WFCatalog DB (gray) - database used by the WFCatalog collector and API. +- FDSNWS-Availability API (blue) - Flask-based FDSNWS-Availability implementation. +- FDSNWS-Availability Cache (green) - Redis-based cache to store restriction information. +- FDSNWS-Availability Cacher (orange) - Python-based container to harvest and store restriction information. +- FDSNWS-Availability Update (purple) - JS script to fill the `availability` materialized view using WFCatalog `daily_streams` and `c_segments` collections. + +![FDSNWS-Availability deployment diagram](deployment.png) + +Following implementation requires MongoDB v4.2 or higher. + +## Deployment + +1. Clone the [https://github.com/EIDA/ws-availability] repository and go to its root +1. Copy `config.py.sample` to `config.py` and adjust it as needed (please notice there are two sections - `RUNMODE == "production"` and `RUNMODE == "test"`; for Docker deployment use the `production` section): + + ```bash + # WFCatalog MongoDB + MONGODB_HOST = "localhost" #MongoDB host + MONGODB_PORT = 27017 #MongoDB port + MONGODB_USR = "" #MongoDB user + MONGODB_PWD = "" #MongoDB password + MONGODB_NAME = "wfrepo" #MongoDB database name + FDSNWS_STATION_URL = "https://orfeus-eu.org/fdsnws/station/1/query" #FDSNWS-Station endpoint to harvest restriction information from + CACHE_HOST = "localhost" #Cache host + CACHE_PORT = 6379 #Cache port + CACHE_INVENTORY_KEY = "inventory" #Cache key for restriction information + CACHE_INVENTORY_PERIOD = 0 #Cache invalidation period for `inventory` key; 0 = never invalidate + CACHE_RESP_PERIOD = 1200 #Cache invalidation period for API response + ``` + +1. Build the containers: + + ```bash + docker-compose -p 'fdsnws-availability' up -d --no-deps --build + ``` + + When the Docker stack is deployed, you will see 3 containers running: + + ```bash + $ docker ps + CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES + 4e3dace01fb0 fdsnws-availability_api "/bin/bash -c 'gunic…" 10 seconds ago Up 5 seconds 0.0.0.0:9001->9001/tcp fdsnws-availability-api + 3c91e0d1c5e6 fdsnws-availability_cacher "/bin/bash -c 'pytho…" 10 seconds ago Up 5 seconds 0.0.0.0:11211->11211/tcp fdsnws-availability-cacher + d983e64d64a8 redis:7.0-alpine "docker-entrypoint.s…" 10 seconds ago Up 5 seconds 0.0.0.0:6379->6379/tcp fdsnws-availability-cache + ``` + + You can follow the `fdsnws-availability-cacher` container to see the status of restriction information harvesting: + + ```bash + $ docker logs --follow fdsnws-availability-cacher + [2023-01-11 09:47:38 +0000] [0] [INFO] Getting inventory from FDSNWS-Station... + [2023-01-11 09:47:39 +0000] [0] [INFO] Harvesting 33 from https://orfeus-eu.org/fdsnws/station/1/query?level=network: 2M,3T,6A... + #... + [2023-02-15 08:31:56 +0000] [0] [INFO] Completed caching inventory from FDSNWS-Station + ``` + + Once `fdsnws-availability-cacher` is completed, it will go down. Harvested information is stored in the Redis DB served by `fdsnws-availability-cache` container. To rebuild the cache, simply restart the container using: + + ```bash + docker start fdsnws-availability-cacher + ``` + + ```bash + docker start fdsnws-availability-cacher + ``` + + With the current configuration, the `fdsnws-availability-cacher` container runs a continuous scheduler (`apps/scheduler.py`). This scheduler automatically handles cache rebuilding every day at 3:00 AM. It will harvest and overwrite the restricted information stored in the Redis instance without requiring host-level cronjobs. + +1. Materialized view + 1. Initial build + + When the stack is initially deployed, the materialized view is not yet in place. To build it, issue the following command: + + ```bash + # Script started on 2023-02-24 + $ mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo --eval "daysBack=365" views/main.js + Processing WFCatalog entries using networks: '^.*$', stations: '^.*$', start: '2022-03-24', end: '2023-03-24' completed! + ``` + + It will go throught the documents in `daily_streams` and `c_segments` from last year, extract availability information and store it in the `availability` materialized view. + + 1. Daily appension + + To automate availability information appension, the `fdsnws-availability-cacher` container automatically executes the update logic every day at 6:00 AM. + It will go through the documents in `daily_streams` and `c_segments` from the last day, extract availability information, and append it to the `availability` materialized view. + Because this runs via the container's scheduler, no host-level interference is required. + + 1. Back-processing + + Processing can be also executed on a predefined subset of data using `networks`, `stations`, `start`, and `end` parameters by executing the updater logic directly within the python environment of the `cacher` container, bypassing the scheduler triggers. + + 1. Indexes + + It is highly suggested to create at least following index in the `availability` materialized view. First, login to your MongoDB instance using `mongosh` and then execute following commands: + + ```bash + use wfrepo; + db.availability.createIndex({ net: 1, sta: 1, loc: 1, cha: 1, ts: 1, te: 1 }) + ``` + +1. Validation + + Now it is time to check if everything is running (remember to change the `net` query parameter). API is exposed by default on port `9001`, let's try to get the landing page: + + ```bash + $ curl "127.0.0.1:9001" + + + + + + FDSNWS-Availability + + +

FDSNWS Availability Web Service

+

+ The availability web service returns detailed time span information about + available time series data. Please refer to + http://www.fdsn.org/webservice + for a complete service description. +

+ +

Available URLs

+ + + ``` + + Get request to the `/extent` method: + + ```bash + $ curl "127.0.0.1:9001/extent?net=NA&start=2023-02-01" + #Network Station Location Channel Quality SampleRate Earliest Latest Updated TimeSpans Restriction + NA SABA BHE D 40.0 2023-02-01T00:00:00.000000Z 2023-02-14T00:00:00.000000Z 2023-02-14T07:41:14Z 1 OPEN + NA SABA BHN D 40.0 2023-02-01T00:00:00.000000Z 2023-02-14T00:00:00.000000Z 2023-02-14T07:42:07Z 1 OPEN + NA SABA BHZ D 40.0 2023-02-01T00:00:00.000000Z 2023-02-14T00:00:00.000000Z 2023-02-14T07:41:41Z 1 OPEN + # ... + ``` + + Get request to the `/query` method: + + ```bash + $ curl "127.0.0.1:9001/query?net=NA&start=2023-02-01" + #Network Station Location Channel Quality SampleRate Earliest Latest + NA SABA BHE D 40.0 2023-02-01T00:00:00.000000Z 2023-02-02T00:00:00.000000Z + NA SABA BHE D 40.0 2023-02-02T00:00:00.000000Z 2023-02-03T00:00:00.000000Z + NA SABA BHE D 40.0 2023-02-03T00:00:00.000000Z 2023-02-04T00:00:00.000000Z + NA SABA BHE D 40.0 2023-02-04T00:00:00.000000Z 2023-02-05T00:00:00.000000Z + NA SABA BHE D 40.0 2023-02-05T00:00:00.000000Z 2023-02-06T00:00:00.000000Z + NA SABA BHE D 40.0 2023-02-06T00:00:00.000000Z 2023-02-07T00:00:00.000000Z + NA SABA BHE D 40.0 2023-02-07T00:00:00.000000Z 2023-02-08T00:00:00.000000Z + NA SABA BHE D 40.0 2023-02-08T00:00:00.000000Z 2023-02-09T00:00:00.000000Z + NA SABA BHE D 40.0 2023-02-09T00:00:00.000000Z 2023-02-10T00:00:00.000000Z + NA SABA BHE D 40.0 2023-02-10T00:00:00.000000Z 2023-02-11T00:00:00.000000Z + NA SABA BHE D 40.0 2023-02-11T00:00:00.000000Z 2023-02-12T00:00:00.000000Z + NA SABA BHE D 40.0 2023-02-12T00:00:00.000000Z 2023-02-13T00:00:00.000000Z + NA SABA BHE D 40.0 2023-02-13T00:00:00.000000Z 2023-02-14T00:00:00.000000Z + ``` + +1. Reverse proxy example config + + An example of Apache reverse proxy config: + + ```bash + # FDSNWS-Availability (Docker) + + # in order to omit CORS error + Header add Access-Control-Allow-Origin "*" + + ProxyPass /fdsnws/availability/1 :9001 timeout=600 + ProxyPassReverse /fdsnws/availability/1 :9001 timeout=600 + ``` + +## Performance Tuning + +### Gunicorn Workers Configuration + +The number of Gunicorn workers directly affects how many concurrent requests your service can handle. The default configuration uses **1 worker** for maximum stability on resource-constrained servers. + +#### Current Configuration (docker-compose.yml) +```yaml +command: gunicorn --bind 0.0.0.0:9001 --workers 1 start:app +``` + +#### Adjusting Worker Count + +**For servers with limited resources or thread creation issues:** +```yaml +# Minimum configuration (most stable) +command: gunicorn --bind 0.0.0.0:9001 --workers 1 --timeout 600 start:app +``` + +**For servers with moderate resources:** +```yaml +# 2-3 workers (recommended for most deployments) +command: gunicorn --bind 0.0.0.0:9001 --workers 2 --timeout 600 start:app +``` + +**For high-performance servers:** +```yaml +# Formula: (2 × CPU cores) + 1 +# Example for 4-core server: --workers 9 +command: gunicorn --bind 0.0.0.0:9001 --workers 4 --timeout 600 start:app +``` + +#### Important Notes + +1. **Each worker is a separate process** with its own memory footprint +2. **More workers ≠ always better** - too many workers can exhaust system resources +3. **Monitor for errors** after increasing workers: + ```bash + docker logs -f fdsnws-availability-api + # Watch for "pthread_create failed" or similar errors + ``` + +4. **Resource usage check:** + ```bash + docker stats fdsnws-availability-api + # If CPU < 80% and memory available, you can add more workers + ``` + +### MongoDB Connection Pool + +The MongoDB connection pool is configured in `apps/wfcatalog_client.py`: + +```python +maxPoolSize=1 # Connections per worker +``` + +#### How It Works + +- **Each Gunicorn worker** has its own MongoDB client +- **Total connections** = `workers × maxPoolSize` +- **Example:** 2 workers × 1 pool = 2 total MongoDB connections + +#### When to Adjust + +**Keep `maxPoolSize=1` if:** +- ✅ Using sync workers (default Gunicorn configuration) +- ✅ Each worker handles one request at a time +- ✅ Server has resource constraints + +**Increase `maxPoolSize` only if:** +- Using async workers (gevent/eventlet) +- Using threading within workers +- MongoDB is a bottleneck (check with profiling) + +#### Example Configurations + +| Workers | maxPoolSize | Total Connections | Use Case | +|---------|-------------|-------------------|----------| +| 1 | 1 | 1 | Minimal (default) | +| 2 | 1 | 2 | Recommended | +| 4 | 1 | 4 | High performance | +| 2 | 5 | 10 | Async workers | + +### Thread Limiting (Important!) + +The configuration includes thread limits to prevent `pthread_create failed` errors on restricted servers: + +```yaml +environment: + OPENBLAS_NUM_THREADS: 1 + MKL_NUM_THREADS: 1 + NUMEXPR_NUM_THREADS: 1 + OMP_NUM_THREADS: 1 +``` + +**Do not remove these** unless you're certain your server can handle multiple threads per process. These prevent NumPy/ObsPy from spawning excessive threads. + +### Troubleshooting + +**Problem:** Service crashes with "pthread_create failed" +- **Solution:** Reduce workers to 1, keep thread limits in place + +**Problem:** Slow response times under load +- **Solution:** Increase workers (if resources allow), monitor with `docker stats` + +**Problem:** High memory usage +- **Solution:** Reduce workers, check for memory leaks with profiling + +**Problem:** MongoDB connection errors +- **Solution:** Check total connections (workers × maxPoolSize) against MongoDB limits + +### Performance Monitoring + +See `tests/performance/` for profiling and benchmarking tools: + +```bash +# Quick performance test +bash tests/performance/quick_test.sh + +# Detailed profiling +python tests/performance/profiler.py + +# Load testing +locust -f tests/performance/locustfile.py --host=http://localhost:9001 +``` + +For more details, see [Performance Analysis Plan](tests/performance/README.md). + +## Running in development environment + +1. Go to the root directory. +1. Copy `config.py.sample` to `config.py` and adjust it as needed. +1. Create the virtual environment: + + ```bash + python3 -m venv env + ``` + +1. Activate the virtual environment: + + ```bash + source env/bin/activate + ``` + +1. Install the dependencies: + + ```bash + pip install -r requirements.txt + ``` + +1. Create Redis instance (mandatory for WFCatalog-based deployment): + + ```bash + docker run -p 6379:6379 --name cache -d redis:7.0-alpine redis-server --save 20 1 --loglevel warning + ``` + +1. Build the cache: + + ```bash + python3 cache.py + ``` + +1. Now you can either: + 1. Run it: + + ```bash + RUNMODE=test FLASK_APP=start.py flask run + + # Or with gunicorn: + RUNMODE=test gunicorn --workers 2 --timeout 60 --bind 0.0.0.0:9001 start:app + ``` + + 1. Debug it in VS Code (F5) after selecting "Launch (Flask)" config. + +## RUNMODE builtin values + +- `production` +- `test` + +## Tests + +Tests can be executed from the respository root using following command: + +```bash +PYTHONPATH=./apps/ python3 -m unittest discover tests/ +``` + +## Ideas for improvements + +1. Move restriction information from Redis cache directly to the `db.availability` materialized view. This would imply modifying the `views/main.js` script with code harvesting this information directly from the FDSNWS-Station instance. +1. Modify underlying RESIF code from logic based on list of arrays to list of objects/dicts which is native MongoDB response to prevent the object/dict to array casting. + +## References + +This repository has been forked from [gitlab.com/resif/ws-availability](https://gitlab.com/resif/ws-availability), special thanks to our colleagues at RESIF for sharing their implementation of the FDSNWS-Availability web service. 💐 diff --git a/apps/data_access_layer.py b/apps/data_access_layer.py index 49a3e14..49d026a 100644 --- a/apps/data_access_layer.py +++ b/apps/data_access_layer.py @@ -9,9 +9,9 @@ from flask import make_response from apps.globals import Error -from apps.globals import MAX_DATA_ROWS from apps.globals import SCHEMAVERSION from apps.globals import QUALITY, SAMPLERATE, START, END, UPDATED, STATUS, COUNT +from apps.settings import settings from apps.utils import error_request from apps.utils import overflow_error from apps.utils import tictac @@ -419,7 +419,7 @@ def get_output(param_dic_list: list[dict]) -> Any: nrows = len(data) logging.info(f"Number of collected rows: {nrows}") - if nrows > MAX_DATA_ROWS: + if nrows > settings.max_data_rows: return overflow_error(Error.TOO_MUCH_ROWS) indexes = get_indexes(params) @@ -435,6 +435,9 @@ def get_output(param_dic_list: list[dict]) -> Any: response = get_response(params, data) logging.debug(f"Processing in {tictac(tic)} seconds.") return response + except ValueError as ex: + # Catch breadth/complexity errors from Redis guardrails and return 413 + return overflow_error(str(ex)) except Exception as ex: logging.exception(str(ex)) finally: diff --git a/apps/globals.py b/apps/globals.py index ad760c6..ba14462 100644 --- a/apps/globals.py +++ b/apps/globals.py @@ -1,93 +1,95 @@ -# version string of the json format -SCHEMAVERSION = 1.0 - -# postgresql schema -SCHEMA = "wsavailability" - -# Response -QUALITY = 4 -SAMPLERATE = 5 -START = 6 -END = 7 -UPDATED = 8 -STATUS = 9 -COUNT = 10 # timespancount - -# limitations -TIMEOUT = 600 -MAX_DAYS = None -MAX_ROWS = "2_500_000" -MAX_DATA_ROWS = int(MAX_ROWS.replace(",", "")) -MAX_MERGEGAPS = 10000000000 - -# available parameter values -OUTPUT = ("geocsv", "json", "request", "text", "zip") -NODATA_CODE = ("204", "404") -STRING_TRUE = ("yes", "true", "t", "y", "1", "") -STRING_FALSE = ("no", "false", "f", "n", "0") -SHOW = "latestupdate" -MERGE = ("quality", "samplerate", "overlap") -ORDERBY = ( - "nslc_time_quality_samplerate", - "timespancount", - "timespancount_desc", - "latestupdate", - "latestupdate_desc", -) - -# error message constants -DOCUMENTATION_URI = "http://www.fdsn.org/webservices/fdsnws-availability-1.0.pdf" -SERVICE = "fdsnws-availability" -VERSION = "1.0.4" - - -class Error: - UNKNOWN_PARAM = "Unknown query parameter: " - MULTI_PARAM = "Multiple entries for query parameter: " - VALID_PARAM = "Valid parameters." - START_LATER = "The starttime cannot be later than the endtime: " - TOO_LONG_DURATION = "Too many days requested (greater than " - TOO_MUCH_ROWS = f"The request exceeds the limit of {MAX_ROWS} rows." - UNSPECIFIED = "Error processing your request." - NODATA = "Your query doesn't match any available data." - TIMEOUT = f"Your query exceeds timeout ({TIMEOUT} seconds)." - MISSING = "Missing parameter: " - BAD_VAL = " Invalid value: " - CHAR = "White space(s) or invalid string. Invalid value for: " - EMPTY = "Empty string. Invalid value for: " - BOOL = "(Valid boolean values are: true/false, yes/no, t/f or 1/0)" - NETWORK = "Invalid network code: " - STATION = "Invalid station code: " - LOCATION = "Invalid location code: " - CHANNEL = "Invalid channel code: " - QUALITY = "Invalid quality code: " - TIME = "Bad date value: " - ROWLIMIT = "The limit parameter must be an integer." + BAD_VAL - MERGE = f"Accepted merge values are: {MERGE}." + BAD_VAL - SHOW = f"Accepted show values: {SHOW}." + BAD_VAL - ORDERBY = f"Accepted orderby values are: {ORDERBY}." + BAD_VAL - MERGEGAPS = ( - f"The mergegaps parameter must be a float inside range [0, {MAX_MERGEGAPS}]." - + BAD_VAL - ) - MERGEGAPS_QUERY_ONLY = ( - "The mergegaps option is not available with extent mode but with query mode." - ) - OUTPUT = f"Accepted output values are: {OUTPUT}." + BAD_VAL - NODATA_CODE = f"Accepted nodata values are: {NODATA_CODE}." + BAD_VAL - NO_WILDCARDS = "Wildcards or lists are not allowed in network parameter if there are wildcards (* or more than one ?) in station parameters." - NO_SELECTION = "Request contains no selections." - - -class HTTP: - _200_ = "Successful request. " - _204_ = "No data matches the selection. " - _400_ = "Bad request due to improper value. " - _401_ = "Authentication is required. " - _403_ = "Forbidden access. " - _404_ = "No data matches the selection. " - _408_ = "Request exceeds timeout. " - _413_ = "Request too large. " - _414_ = "Request URI too large. " - _500_ = "Internal server error. " - _503_ = "Service unavailable. " +# version string of the json format +SCHEMAVERSION = 1.0 + +# postgresql schema +SCHEMA = "wsavailability" + +# Response +QUALITY = 4 +SAMPLERATE = 5 +START = 6 +END = 7 +UPDATED = 8 +STATUS = 9 +COUNT = 10 # timespancount + +from apps.settings import settings + +# limitations +TIMEOUT = 600 +MAX_DAYS = None +MAX_MERGEGAPS = 10000000000 + +# available parameter values +OUTPUT = ("geocsv", "json", "request", "text", "zip") +NODATA_CODE = ("204", "404") +STRING_TRUE = ("yes", "true", "t", "y", "1", "") +STRING_FALSE = ("no", "false", "f", "n", "0") +SHOW = "latestupdate" +MERGE = ("quality", "samplerate", "overlap") +ORDERBY = ( + "nslc_time_quality_samplerate", + "timespancount", + "timespancount_desc", + "latestupdate", + "latestupdate_desc", +) + +# error message constants +DOCUMENTATION_URI = "http://www.fdsn.org/webservices/fdsnws-availability-1.0.pdf" +SERVICE = "fdsnws-availability" +VERSION = "1.0.4" + + +class Error: + UNKNOWN_PARAM = "Unknown query parameter: " + MULTI_PARAM = "Multiple entries for query parameter: " + VALID_PARAM = "Valid parameters." + START_LATER = "The starttime cannot be later than the endtime: " + TOO_LONG_DURATION = "Too many days requested (greater than " + TOO_MUCH_ROWS = f"The request exceeds the limit of {settings.max_data_rows} rows." + TOO_MANY_STREAMS = f"The request matches too many streams (limit is {settings.max_streams}). Please be more specific." + BROAD_QUERY = "Request too broad: please provide starttime/endtime, or specify at least a station or channel." + UNSPECIFIED = "Error processing your request." + NODATA = "Your query doesn't match any available data." + TIMEOUT = f"Your query exceeds timeout ({TIMEOUT} seconds)." + MISSING = "Missing parameter: " + BAD_VAL = " Invalid value: " + CHAR = "White space(s) or invalid string. Invalid value for: " + EMPTY = "Empty string. Invalid value for: " + BOOL = "(Valid boolean values are: true/false, yes/no, t/f or 1/0)" + NETWORK = "Invalid network code: " + STATION = "Invalid station code: " + LOCATION = "Invalid location code: " + CHANNEL = "Invalid channel code: " + QUALITY = "Invalid quality code: " + TIME = "Bad date value: " + ROWLIMIT = "The limit parameter must be an integer." + BAD_VAL + MERGE = f"Accepted merge values are: {MERGE}." + BAD_VAL + SHOW = f"Accepted show values: {SHOW}." + BAD_VAL + ORDERBY = f"Accepted orderby values are: {ORDERBY}." + BAD_VAL + MERGEGAPS = ( + f"The mergegaps parameter must be a float inside range [0, {MAX_MERGEGAPS}]." + + BAD_VAL + ) + MERGEGAPS_QUERY_ONLY = ( + "The mergegaps option is not available with extent mode but with query mode." + ) + OUTPUT = f"Accepted output values are: {OUTPUT}." + BAD_VAL + NODATA_CODE = f"Accepted nodata values are: {NODATA_CODE}." + BAD_VAL + NO_WILDCARDS = "Wildcards or lists are not allowed in network parameter if there are wildcards (* or more than one ?) in station parameters." + NO_SELECTION = "Request contains no selections." + + +class HTTP: + _200_ = "Successful request. " + _204_ = "No data matches the selection. " + _400_ = "Bad request due to improper value. " + _401_ = "Authentication is required. " + _403_ = "Forbidden access. " + _404_ = "No data matches the selection. " + _408_ = "Request exceeds timeout. " + _413_ = "Request too large. " + _414_ = "Request URI too large. " + _500_ = "Internal server error. " + _503_ = "Service unavailable. " diff --git a/apps/restriction.py b/apps/restriction.py index fb17ecd..e7ef8f3 100644 --- a/apps/restriction.py +++ b/apps/restriction.py @@ -1,162 +1,162 @@ -import logging -import redis -import pickle -from datetime import date -from enum import Flag, auto -from functools import reduce - - -class Restriction(Flag): - OPEN = auto() - RESTRICTED = auto() - PARTIAL = OPEN | RESTRICTED - - def __str__(self): - return self.name - - -class Epoch: - def __init__( - self, - net_code: str, - sta_code: str, - loc_code: str, - cha_code: str, - start_date: date, - end_date: date, - ): - self.network = net_code - self.station = sta_code - self.location = loc_code - self.channel = cha_code - self.start = start_date - self.end = end_date - self.restriction = None - - @property - def seed_id(self) -> str: - return f"{self.network}.{self.station}.{self.location}.{self.channel}" - - def __str__(self): - return f"{self.seed_id} {self.start} --- {self.end} {self.restriction}" - - - -# Global Redis Pool to prevent connection churn -REDIS_POOL = None - -class RestrictionInventory: - def __init__(self, host: str = "localhost", port: int = 6379, key: str = "inventory"): - global REDIS_POOL - - self._inv = {} - self._known_seedIDs = set() - self._restricted_seedIDs = set() - - if REDIS_POOL is None: - REDIS_POOL = redis.ConnectionPool( - host=host, - port=port, - db=0, - max_connections=10 # Limit Redis connections explicitly - ) - - self._pool = REDIS_POOL - self._redis = redis.Redis(connection_pool=self._pool) - cached_inventory = self._redis.get(key) - # Try to get cached inventory from shared memcache instance - if cached_inventory: - self._inv = pickle.loads(cached_inventory) - self._restricted_seedIDs = set([ - seedId - for seedId in self._inv - if any(e.restriction != Restriction.OPEN for e in self._inv[seedId]) - ]) - self._known_seedIDs = set([ - seedId - for seedId in self._inv - ]) - logging.info(f"Loaded inventory from cache...") - return - else: - logging.warning( - "Inventory information is not cached and needs to be rebuilt. " - "Run the cacher container to populate the Redis inventory key." - ) - - @property - def is_populated(self): - return len(self._inv) > 0 - - def __str__(self): - output_str = "" - for seed_id in self._inv: - output_str += seed_id + "\n" - for epoch in self._inv[seed_id]: - output_str += f" {epoch}\n" - return output_str.strip() - - def is_restricted( - self, seed_id: str, start_date: date, end_date: date - ) -> Restriction: - # If station doesn't/didn't exist, return None - if seed_id not in self._inv: - return None - if end_date < self._inv[seed_id][0].start: - return None - if self._inv[seed_id][-1].end and start_date > self._inv[seed_id][-1].end: - return None - - # Collect all restriction statuses in the interval - # Assumes epochs are sorted and no intermediate end date in None - restrictions = [] - for epoch in self._inv[seed_id]: - logging.debug( - "%s %s %s %s %s", - start_date, - end_date, - epoch.start, - epoch.end, - epoch.restriction, - ) - if end_date < epoch.start: - logging.debug(" Break1") - break - if epoch.end and start_date > epoch.end: - logging.debug(" Continue") - continue - - logging.debug(" Append") - restrictions.append(epoch.restriction) - if epoch.end and end_date <= epoch.end: - logging.debug(" Break2") - break - - # Shouldn't happen, but just to be safe - if len(restrictions) == 0: - return None - - if len(restrictions) == 1: - return restrictions[0] - - # Just OR all statuses - return reduce(lambda x, y: x | y, restrictions) - - def restriction_history(self, seed_id: str) -> list: - # If station doesn't exist, return None - if seed_id not in self._inv: - return None - return [ - (epoch.start, epoch.end, epoch.restriction) for epoch in self._inv[seed_id] - ] - - -if __name__ == "__main__": - restricted = RestrictionInventory() - print(restricted) - print(restricted.is_restricted("GB.WLF1..HHZ", date(2000, 1, 1), date(2002, 1, 1))) - print(restricted.is_restricted("GB.WLF1..HHZ", date(2008, 1, 1), date(2009, 1, 1))) - print(restricted.is_restricted("GB.WLF1..HHZ", date(2020, 1, 1), date(2001, 1, 1))) - print(restricted.is_restricted("GB.XXXX..HHZ", date(2000, 1, 1), date(2002, 1, 1))) - print(restricted.restriction_history("GB.WLF1..HHZ")) - print(restricted.restriction_history("GB.XXXX..HHZ")) +import logging +import redis +import pickle +from datetime import date +from enum import Flag, auto +from functools import reduce + + +class Restriction(Flag): + OPEN = auto() + RESTRICTED = auto() + PARTIAL = OPEN | RESTRICTED + + def __str__(self): + return self.name + + +class Epoch: + def __init__( + self, + net_code: str, + sta_code: str, + loc_code: str, + cha_code: str, + start_date: date, + end_date: date, + ): + self.network = net_code + self.station = sta_code + self.location = loc_code + self.channel = cha_code + self.start = start_date + self.end = end_date + self.restriction = None + + @property + def seed_id(self) -> str: + return f"{self.network}.{self.station}.{self.location}.{self.channel}" + + def __str__(self): + return f"{self.seed_id} {self.start} --- {self.end} {self.restriction}" + + + +# Global Redis Pool to prevent connection churn +REDIS_POOL = None + +class RestrictionInventory: + def __init__(self, host: str = "localhost", port: int = 6379, key: str = "inventory"): + global REDIS_POOL + + self._inv = {} + self._known_seedIDs = set() + self._restricted_seedIDs = set() + + if REDIS_POOL is None: + REDIS_POOL = redis.ConnectionPool( + host=host, + port=port, + db=0, + max_connections=10 # Limit Redis connections explicitly + ) + + self._pool = REDIS_POOL + self._redis = redis.Redis(connection_pool=self._pool) + cached_inventory = self._redis.get(key) + # Try to get cached inventory from shared memcache instance + if cached_inventory: + self._inv = pickle.loads(cached_inventory) + self._restricted_seedIDs = set([ + seedId + for seedId in self._inv + if any(e.restriction != Restriction.OPEN for e in self._inv[seedId]) + ]) + self._known_seedIDs = set([ + seedId + for seedId in self._inv + ]) + logging.info(f"Loaded inventory from cache...") + return + else: + logging.warning( + "Inventory information is not cached and needs to be rebuilt. " + "Run the cacher container to populate the Redis inventory key." + ) + + @property + def is_populated(self): + return len(self._inv) > 0 + + def __str__(self): + output_str = "" + for seed_id in self._inv: + output_str += seed_id + "\n" + for epoch in self._inv[seed_id]: + output_str += f" {epoch}\n" + return output_str.strip() + + def is_restricted( + self, seed_id: str, start_date: date, end_date: date + ) -> Restriction: + # If station doesn't/didn't exist, return None + if seed_id not in self._inv: + return None + if end_date < self._inv[seed_id][0].start: + return None + if self._inv[seed_id][-1].end and start_date > self._inv[seed_id][-1].end: + return None + + # Collect all restriction statuses in the interval + # Assumes epochs are sorted and no intermediate end date in None + restrictions = [] + for epoch in self._inv[seed_id]: + logging.debug( + "%s %s %s %s %s", + start_date, + end_date, + epoch.start, + epoch.end, + epoch.restriction, + ) + if end_date < epoch.start: + logging.debug(" Break1") + break + if epoch.end and start_date > epoch.end: + logging.debug(" Continue") + continue + + logging.debug(" Append") + restrictions.append(epoch.restriction) + if epoch.end and end_date <= epoch.end: + logging.debug(" Break2") + break + + # Shouldn't happen, but just to be safe + if len(restrictions) == 0: + return None + + if len(restrictions) == 1: + return restrictions[0] + + # Just OR all statuses + return reduce(lambda x, y: x | y, restrictions) + + def restriction_history(self, seed_id: str) -> list: + # If station doesn't exist, return None + if seed_id not in self._inv: + return None + return [ + (epoch.start, epoch.end, epoch.restriction) for epoch in self._inv[seed_id] + ] + + +if __name__ == "__main__": + restricted = RestrictionInventory() + print(restricted) + print(restricted.is_restricted("GB.WLF1..HHZ", date(2000, 1, 1), date(2002, 1, 1))) + print(restricted.is_restricted("GB.WLF1..HHZ", date(2008, 1, 1), date(2009, 1, 1))) + print(restricted.is_restricted("GB.WLF1..HHZ", date(2020, 1, 1), date(2001, 1, 1))) + print(restricted.is_restricted("GB.XXXX..HHZ", date(2000, 1, 1), date(2002, 1, 1))) + print(restricted.restriction_history("GB.WLF1..HHZ")) + print(restricted.restriction_history("GB.XXXX..HHZ")) diff --git a/apps/root.py b/apps/root.py index 0ccfb8b..eadc1e3 100644 --- a/apps/root.py +++ b/apps/root.py @@ -16,7 +16,8 @@ from flask import request from apps.data_access_layer import get_output -from apps.globals import HTTP, MAX_DATA_ROWS, MAX_DAYS, MAX_MERGEGAPS, TIMEOUT, Error +from apps.globals import HTTP, MAX_DAYS, MAX_MERGEGAPS, TIMEOUT, Error +from apps.settings import settings from apps.parameters import Parameters from apps.models import QueryParameters from pydantic import ValidationError @@ -97,7 +98,7 @@ def check_parameters(params: dict) -> tuple[dict, dict]: if params["limit"]: params["limit"] = int(params["limit"]) elif params["limit"] is None: - params["limit"] = MAX_DATA_ROWS + params["limit"] = settings.max_data_rows return (params, {"msg": HTTP._200_, "details": Error.VALID_PARAM, "code": 200}) diff --git a/apps/scheduler.py b/apps/scheduler.py index d03bb88..415764e 100644 --- a/apps/scheduler.py +++ b/apps/scheduler.py @@ -1,125 +1,125 @@ -import logging -import os - -import sentry_sdk -from apscheduler.schedulers.blocking import BlockingScheduler -from apscheduler.triggers.cron import CronTrigger - -from apps.sentry import init_sentry -from apps.updater import AvailabilityUpdater -from apps.wfcatalog_client import get_db_client -from cache import Cache - -# Set up logging for the scheduler -logging.basicConfig( - handlers=[logging.StreamHandler()], - level=logging.INFO, - format="[%(asctime)s] [SCHEDULER] [%(levelname)s] %(message)s", - datefmt="%Y-%m-%d %H:%M:%S +0000", -) -logger = logging.getLogger(__name__) - - -@sentry_sdk.monitor( - monitor_slug="rebuild-inventory-cache", - monitor_config={ - "schedule": {"type": "crontab", "value": "0 3 * * *"}, - "checkin_margin": 10, - "max_runtime": 60, - "timezone": "UTC", - }, -) - -def run_inventory_cache(): - """Builds the inventory cache stored in Redis. - - Wrapped with @sentry_sdk.monitor so that Sentry Crons tracks: - - When the job starts and finishes (check-in: IN_PROGRESS → OK) - - When the job fails (check-in: ERROR) with full exception details - - When the job never runs (check-in: MISSED) e.g. if the container goes down - """ - logger.info("Starting scheduled task: Rebuild Inventory Cache") - try: - cache = Cache() - cache.build_cache() - logger.info("Completed scheduled task: Rebuild Inventory Cache") - except Exception as e: - sentry_sdk.capture_exception(e) - logger.exception("Failed to build inventory cache: %s", e) - raise # Re-raise so the Sentry monitor registers this run as ERROR - - -@sentry_sdk.monitor( - monitor_slug="update-availability-view", - monitor_config={ - "schedule": {"type": "crontab", "value": "0 6 * * *"}, - "checkin_margin": 10, - "max_runtime": 60, - "timezone": "UTC", - }, -) -def run_materialized_view_update(): - """Updates the MongoDB materialized view from daily_streams. - - Wrapped with @sentry_sdk.monitor so that Sentry Crons tracks: - - When the job starts and finishes (check-in: IN_PROGRESS → OK) - - When the job fails (check-in: ERROR) with full exception details - - When the job never runs (check-in: MISSED) e.g. if the container goes down - """ - logger.info("Starting scheduled task: Update Availability Materialized View") - try: - db_client = get_db_client() - db_name = os.getenv("MONGODB_NAME", "wfrepo") - db = db_client.get_database(db_name) - - updater = AvailabilityUpdater(db) - - # Run the updates using the default (last 1 day) behavior - updater.run_updates() - logger.info("Completed scheduled task: Update Availability Materialized View") - except Exception as e: - sentry_sdk.capture_exception(e) - logger.exception("Failed to update availability materialized view: %s", e) - raise # Re-raise so the Sentry monitor registers this run as ERROR - - -if __name__ == "__main__": - # Initialize Sentry before starting the scheduler so all events are captured. - # Reuses the shared init_sentry() from apps/sentry.py (same as the API). - # No-op if SENTRY_DSN is not set. - init_sentry() - logger.info("Initializing APScheduler...") - - scheduler = BlockingScheduler() - - # Schedule cache rebuilding every day at 3:00 AM (Equivalent to 0 3 * * * cron) - scheduler.add_job( - run_inventory_cache, - CronTrigger(hour=3, minute=0), - id="rebuild_inventory_cache_job", - name="Rebuilds the cache mapping seed IDs to restriction data from FDSNWS Station", - replace_existing=True, - ) - - # Schedule DB view update every day at 6:00 AM (Equivalent to 0 6 * * * cron) - scheduler.add_job( - run_materialized_view_update, - CronTrigger(hour=6, minute=0), - id="update_availability_view_job", - name="Builds the daily_streams aggregation into the availability materialized view", - replace_existing=True, - ) - - # Run jobs once on startup to ensure persistence/freshness after a restart - logger.info("Running initial startup tasks...") - try: - run_inventory_cache() - run_materialized_view_update() - except Exception as e: - logger.error("Initial startup tasks failed: %s", e) - - logger.info("Scheduler started successfully. Waiting for jobs to execute...") - try: - scheduler.start() - except (KeyboardInterrupt, SystemExit): - logger.info("Scheduler stopped.") +import logging +import os + +import sentry_sdk +from apscheduler.schedulers.blocking import BlockingScheduler +from apscheduler.triggers.cron import CronTrigger + +from apps.sentry import init_sentry +from apps.updater import AvailabilityUpdater +from apps.wfcatalog_client import get_db_client +from cache import Cache + +# Set up logging for the scheduler +logging.basicConfig( + handlers=[logging.StreamHandler()], + level=logging.INFO, + format="[%(asctime)s] [SCHEDULER] [%(levelname)s] %(message)s", + datefmt="%Y-%m-%d %H:%M:%S +0000", +) +logger = logging.getLogger(__name__) + + +@sentry_sdk.monitor( + monitor_slug="rebuild-inventory-cache", + monitor_config={ + "schedule": {"type": "crontab", "value": "0 3 * * *"}, + "checkin_margin": 10, + "max_runtime": 60, + "timezone": "UTC", + }, +) + +def run_inventory_cache(): + """Builds the inventory cache stored in Redis. + + Wrapped with @sentry_sdk.monitor so that Sentry Crons tracks: + - When the job starts and finishes (check-in: IN_PROGRESS → OK) + - When the job fails (check-in: ERROR) with full exception details + - When the job never runs (check-in: MISSED) e.g. if the container goes down + """ + logger.info("Starting scheduled task: Rebuild Inventory Cache") + try: + cache = Cache() + cache.build_cache() + logger.info("Completed scheduled task: Rebuild Inventory Cache") + except Exception as e: + sentry_sdk.capture_exception(e) + logger.exception("Failed to build inventory cache: %s", e) + raise # Re-raise so the Sentry monitor registers this run as ERROR + + +@sentry_sdk.monitor( + monitor_slug="update-availability-view", + monitor_config={ + "schedule": {"type": "crontab", "value": "0 6 * * *"}, + "checkin_margin": 10, + "max_runtime": 60, + "timezone": "UTC", + }, +) +def run_materialized_view_update(): + """Updates the MongoDB materialized view from daily_streams. + + Wrapped with @sentry_sdk.monitor so that Sentry Crons tracks: + - When the job starts and finishes (check-in: IN_PROGRESS → OK) + - When the job fails (check-in: ERROR) with full exception details + - When the job never runs (check-in: MISSED) e.g. if the container goes down + """ + logger.info("Starting scheduled task: Update Availability Materialized View") + try: + db_client = get_db_client() + db_name = os.getenv("MONGODB_NAME", "wfrepo") + db = db_client.get_database(db_name) + + updater = AvailabilityUpdater(db) + + # Run the updates using the default (last 1 day) behavior + updater.run_updates() + logger.info("Completed scheduled task: Update Availability Materialized View") + except Exception as e: + sentry_sdk.capture_exception(e) + logger.exception("Failed to update availability materialized view: %s", e) + raise # Re-raise so the Sentry monitor registers this run as ERROR + + +if __name__ == "__main__": + # Initialize Sentry before starting the scheduler so all events are captured. + # Reuses the shared init_sentry() from apps/sentry.py (same as the API). + # No-op if SENTRY_DSN is not set. + init_sentry() + logger.info("Initializing APScheduler...") + + scheduler = BlockingScheduler() + + # Schedule cache rebuilding every day at 3:00 AM (Equivalent to 0 3 * * * cron) + scheduler.add_job( + run_inventory_cache, + CronTrigger(hour=3, minute=0), + id="rebuild_inventory_cache_job", + name="Rebuilds the cache mapping seed IDs to restriction data from FDSNWS Station", + replace_existing=True, + ) + + # Schedule DB view update every day at 6:00 AM (Equivalent to 0 6 * * * cron) + scheduler.add_job( + run_materialized_view_update, + CronTrigger(hour=6, minute=0), + id="update_availability_view_job", + name="Builds the daily_streams aggregation into the availability materialized view", + replace_existing=True, + ) + + # Run jobs once on startup to ensure persistence/freshness after a restart + logger.info("Running initial startup tasks...") + try: + run_inventory_cache() + run_materialized_view_update() + except Exception as e: + logger.error("Initial startup tasks failed: %s", e) + + logger.info("Scheduler started successfully. Waiting for jobs to execute...") + try: + scheduler.start() + except (KeyboardInterrupt, SystemExit): + logger.info("Scheduler stopped.") diff --git a/apps/sentry.py b/apps/sentry.py index c6c5669..29f2272 100644 --- a/apps/sentry.py +++ b/apps/sentry.py @@ -1,87 +1,87 @@ -import sentry_sdk - -from config import Config - - -def before_send(event, hint): - """ - Scrub sensitive data from Sentry events before sending. - This prevents passwords, API keys, and other secrets from being exposed. - """ - sensitive_keys = { - "password", "passwd", "pwd", "secret", "api_key", "apikey", - "token", "auth", "authorization", "credentials", "private_key", - "access_token", "refresh_token", "session", "cookie" - } - - def scrub_dict(data): - """Recursively scrub sensitive data from dictionaries.""" - if not isinstance(data, dict): - return - - for key in list(data.keys()): - key_lower = str(key).lower() - if any(sensitive in key_lower for sensitive in sensitive_keys): - data[key] = "[Filtered]" - elif isinstance(data[key], dict): - scrub_dict(data[key]) - elif isinstance(data[key], list): - for item in data[key]: - if isinstance(item, dict): - scrub_dict(item) - - # Scrub request data (including IP headers) - if "request" in event: - scrub_dict(event["request"]) - if "headers" in event["request"]: - headers = event["request"]["headers"] - for ip_header in ["X-Forwarded-For", "X-Real-Ip", "True-Client-Ip", "Cf-Connecting-Ip"]: - if ip_header in headers: - headers[ip_header] = "[Filtered]" - if ip_header.lower() in headers: - headers[ip_header.lower()] = "[Filtered]" - - if "env" in event["request"] and "REMOTE_ADDR" in event["request"]["env"]: - event["request"]["env"]["REMOTE_ADDR"] = "[Filtered]" - - # Scrub extra context - if "extra" in event: - scrub_dict(event["extra"]) - - # Aggressively clear user IP - if "user" not in event or event["user"] is None: - event["user"] = {} - - event["user"]["ip_address"] = "0.0.0.0" - scrub_dict(event["user"]) - - # Scrub breadcrumbs - if "breadcrumbs" in event: - for breadcrumb in event["breadcrumbs"].get("values", []): - scrub_dict(breadcrumb) - - # Scrub local variables from stack traces - if "exception" in event: - for exception in event["exception"].get("values", []): - if "stacktrace" in exception: - for frame in exception["stacktrace"].get("frames", []): - if "vars" in frame: - scrub_dict(frame["vars"]) - - return event - - -def init_sentry(): - """Initialize Sentry SDK if SENTRY_DSN is configured.""" - if Config.SENTRY_DSN: - sentry_sdk.init( - dsn=Config.SENTRY_DSN, - traces_sample_rate=Config.SENTRY_TRACES_SAMPLE_RATE, - send_default_pii=False, - before_send=before_send, - # Required for Sentry Cron monitoring (check-ins) - enable_tracing=True, - ) - print(f"[SENTRY] Initialized. DSN={Config.SENTRY_DSN[:40]}...") - else: - print("[SENTRY] SENTRY_DSN not set — Sentry disabled.") +import sentry_sdk + +from config import Config + + +def before_send(event, hint): + """ + Scrub sensitive data from Sentry events before sending. + This prevents passwords, API keys, and other secrets from being exposed. + """ + sensitive_keys = { + "password", "passwd", "pwd", "secret", "api_key", "apikey", + "token", "auth", "authorization", "credentials", "private_key", + "access_token", "refresh_token", "session", "cookie" + } + + def scrub_dict(data): + """Recursively scrub sensitive data from dictionaries.""" + if not isinstance(data, dict): + return + + for key in list(data.keys()): + key_lower = str(key).lower() + if any(sensitive in key_lower for sensitive in sensitive_keys): + data[key] = "[Filtered]" + elif isinstance(data[key], dict): + scrub_dict(data[key]) + elif isinstance(data[key], list): + for item in data[key]: + if isinstance(item, dict): + scrub_dict(item) + + # Scrub request data (including IP headers) + if "request" in event: + scrub_dict(event["request"]) + if "headers" in event["request"]: + headers = event["request"]["headers"] + for ip_header in ["X-Forwarded-For", "X-Real-Ip", "True-Client-Ip", "Cf-Connecting-Ip"]: + if ip_header in headers: + headers[ip_header] = "[Filtered]" + if ip_header.lower() in headers: + headers[ip_header.lower()] = "[Filtered]" + + if "env" in event["request"] and "REMOTE_ADDR" in event["request"]["env"]: + event["request"]["env"]["REMOTE_ADDR"] = "[Filtered]" + + # Scrub extra context + if "extra" in event: + scrub_dict(event["extra"]) + + # Aggressively clear user IP + if "user" not in event or event["user"] is None: + event["user"] = {} + + event["user"]["ip_address"] = "0.0.0.0" + scrub_dict(event["user"]) + + # Scrub breadcrumbs + if "breadcrumbs" in event: + for breadcrumb in event["breadcrumbs"].get("values", []): + scrub_dict(breadcrumb) + + # Scrub local variables from stack traces + if "exception" in event: + for exception in event["exception"].get("values", []): + if "stacktrace" in exception: + for frame in exception["stacktrace"].get("frames", []): + if "vars" in frame: + scrub_dict(frame["vars"]) + + return event + + +def init_sentry(): + """Initialize Sentry SDK if SENTRY_DSN is configured.""" + if Config.SENTRY_DSN: + sentry_sdk.init( + dsn=Config.SENTRY_DSN, + traces_sample_rate=Config.SENTRY_TRACES_SAMPLE_RATE, + send_default_pii=False, + before_send=before_send, + # Required for Sentry Cron monitoring (check-ins) + enable_tracing=True, + ) + print(f"[SENTRY] Initialized. DSN={Config.SENTRY_DSN[:40]}...") + else: + print("[SENTRY] SENTRY_DSN not set — Sentry disabled.") diff --git a/apps/settings.py b/apps/settings.py index c61c30a..8dfd550 100644 --- a/apps/settings.py +++ b/apps/settings.py @@ -1,88 +1,92 @@ -import os -from typing import Literal -from pydantic import Field, field_validator, model_validator -from pydantic_settings import BaseSettings, SettingsConfigDict - -class Settings(BaseSettings): - """ - Application Settings using Pydantic. - - Reads from environment variables. - Adapts defaults based on RUNMODE to match legacy behavior. - """ - runmode: Literal["test", "production"] = Field("test", alias="RUNMODE") - - # WFCatalog MongoDB - mongodb_host: str = Field("localhost", alias="MONGODB_HOST") - mongodb_port: int = Field(27017, alias="MONGODB_PORT") - mongodb_usr: str = Field("", alias="MONGODB_USR") - mongodb_pwd: str = Field("", alias="MONGODB_PWD") - mongodb_name: str = Field("wfrepo", alias="MONGODB_NAME") - - # FDSNWS-Station cache source - fdsnws_station_url: str = Field("https://orfeus-eu.org/fdsnws/station/1/query", alias="FDSNWS_STATION_URL") - - # Cache - cache_host: str = Field("localhost", alias="CACHE_HOST") - cache_port: int = Field(6379, alias="CACHE_PORT") - cache_inventory_key: str = Field("inventory", alias="CACHE_INVENTORY_KEY") - cache_inventory_period: int = Field(0, alias="CACHE_INVENTORY_PERIOD") - cache_resp_period: int = Field(1200, alias="CACHE_RESP_PERIOD") - - model_config = SettingsConfigDict(env_file='.env', env_file_encoding='utf-8', extra='ignore') - - @model_validator(mode='after') - def set_production_defaults(self): - """ - If RUNMODE is production, override localhost defaults with production defaults - (host.docker.internal, etc.) UNLESS they were explicitly set (which we can't easily check here, - so we check if they are still at the 'test' default). - """ - if self.runmode == "production": - # Legacy config logic: if production, DB host is host.docker.internal - # We match this behavior if the value is currently 'localhost' (the test default) - - # if self.mongodb_host == "localhost": - # self.mongodb_host = "host.docker.internal" - - # Host networking: CACHE_HOST env var is used directly (localhost/127.0.0.1) - # if self.cache_host == "localhost": - # self.cache_host = "cache" - pass - - return self - -def load_legacy_config(): - """Attempt to import Config from config.py and return as dict.""" - try: - from config import Config - return { - "RUNMODE": getattr(Config, "RUNMODE", "test"), - "MONGODB_HOST": getattr(Config, "MONGODB_HOST", None), - "MONGODB_PORT": getattr(Config, "MONGODB_PORT", None), - "MONGODB_USR": getattr(Config, "MONGODB_USR", None), - "MONGODB_PWD": getattr(Config, "MONGODB_PWD", None), - "MONGODB_NAME": getattr(Config, "MONGODB_NAME", None), - "FDSNWS_STATION_URL": getattr(Config, "FDSNWS_STATION_URL", None), - "CACHE_HOST": getattr(Config, "CACHE_HOST", None), - "CACHE_PORT": getattr(Config, "CACHE_PORT", None), - "CACHE_INVENTORY_KEY": getattr(Config, "CACHE_INVENTORY_KEY", None), - "CACHE_INVENTORY_PERIOD": getattr(Config, "CACHE_INVENTORY_PERIOD", None), - "CACHE_RESP_PERIOD": getattr(Config, "CACHE_RESP_PERIOD", None), - } - except ImportError: - return {} - - -# Load legacy config options and filter out None values -legacy_defaults = {k: v for k, v in load_legacy_config().items() if v is not None} - -# Remove keys from legacy_defaults if they are set in environment variables -# This ensures Docker environment variables (e.g. MONGODB_HOST) take precedence -# over values hardcoded in config.py (like "localhost") -for key in list(legacy_defaults.keys()): - if key in os.environ: - del legacy_defaults[key] - -# Instantiate settings with remaining legacy defaults -settings = Settings(**legacy_defaults) +import os +from typing import Literal +from pydantic import Field, field_validator, model_validator +from pydantic_settings import BaseSettings, SettingsConfigDict + +class Settings(BaseSettings): + """ + Application Settings using Pydantic. + + Reads from environment variables. + Adapts defaults based on RUNMODE to match legacy behavior. + """ + runmode: Literal["test", "production"] = Field("test", alias="RUNMODE") + + # WFCatalog MongoDB + mongodb_host: str = Field("localhost", alias="MONGODB_HOST") + mongodb_port: int = Field(27017, alias="MONGODB_PORT") + mongodb_usr: str = Field("", alias="MONGODB_USR") + mongodb_pwd: str = Field("", alias="MONGODB_PWD") + mongodb_name: str = Field("wfrepo", alias="MONGODB_NAME") + + # FDSNWS-Station cache source + fdsnws_station_url: str = Field("https://orfeus-eu.org/fdsnws/station/1/query", alias="FDSNWS_STATION_URL") + + # Cache + cache_host: str = Field("localhost", alias="CACHE_HOST") + cache_port: int = Field(6379, alias="CACHE_PORT") + cache_inventory_key: str = Field("inventory", alias="CACHE_INVENTORY_KEY") + cache_inventory_period: int = Field(0, alias="CACHE_INVENTORY_PERIOD") + cache_resp_period: int = Field(1200, alias="CACHE_RESP_PERIOD") + + # Resource Limits + max_data_rows: int = Field(2_500_000, alias="MAX_DATA_ROWS") + max_streams: int = Field(2000, alias="MAX_STREAMS") + + model_config = SettingsConfigDict(env_file='.env', env_file_encoding='utf-8', extra='ignore') + + @model_validator(mode='after') + def set_production_defaults(self): + """ + If RUNMODE is production, override localhost defaults with production defaults + (host.docker.internal, etc.) UNLESS they were explicitly set (which we can't easily check here, + so we check if they are still at the 'test' default). + """ + if self.runmode == "production": + # Legacy config logic: if production, DB host is host.docker.internal + # We match this behavior if the value is currently 'localhost' (the test default) + + # if self.mongodb_host == "localhost": + # self.mongodb_host = "host.docker.internal" + + # Host networking: CACHE_HOST env var is used directly (localhost/127.0.0.1) + # if self.cache_host == "localhost": + # self.cache_host = "cache" + pass + + return self + +def load_legacy_config(): + """Attempt to import Config from config.py and return as dict.""" + try: + from config import Config + return { + "RUNMODE": getattr(Config, "RUNMODE", "test"), + "MONGODB_HOST": getattr(Config, "MONGODB_HOST", None), + "MONGODB_PORT": getattr(Config, "MONGODB_PORT", None), + "MONGODB_USR": getattr(Config, "MONGODB_USR", None), + "MONGODB_PWD": getattr(Config, "MONGODB_PWD", None), + "MONGODB_NAME": getattr(Config, "MONGODB_NAME", None), + "FDSNWS_STATION_URL": getattr(Config, "FDSNWS_STATION_URL", None), + "CACHE_HOST": getattr(Config, "CACHE_HOST", None), + "CACHE_PORT": getattr(Config, "CACHE_PORT", None), + "CACHE_INVENTORY_KEY": getattr(Config, "CACHE_INVENTORY_KEY", None), + "CACHE_INVENTORY_PERIOD": getattr(Config, "CACHE_INVENTORY_PERIOD", None), + "CACHE_RESP_PERIOD": getattr(Config, "CACHE_RESP_PERIOD", None), + } + except ImportError: + return {} + + +# Load legacy config options and filter out None values +legacy_defaults = {k: v for k, v in load_legacy_config().items() if v is not None} + +# Remove keys from legacy_defaults if they are set in environment variables +# This ensures Docker environment variables (e.g. MONGODB_HOST) take precedence +# over values hardcoded in config.py (like "localhost") +for key in list(legacy_defaults.keys()): + if key in os.environ: + del legacy_defaults[key] + +# Instantiate settings with remaining legacy defaults +settings = Settings(**legacy_defaults) diff --git a/apps/updater.py b/apps/updater.py index 7bac453..05ff83a 100644 --- a/apps/updater.py +++ b/apps/updater.py @@ -1,143 +1,143 @@ -import logging -from datetime import datetime, timedelta -from typing import Optional - -from pymongo import MongoClient -from pymongo.database import Database - -logger = logging.getLogger(__name__) - - -class AvailabilityUpdater: - def __init__(self, db: Database): - self.db = db - - def update_availability_daily( - self, - networks: str, - stations: str, - start_date: datetime, - end_date: datetime, - ): - """ - Equivalent to `updateAvailabilityDaily` in views/main.js - """ - pipeline = [ - { - "$match": { - "net": {"$regex": networks}, - "sta": {"$regex": stations}, - "ts": {"$gte": start_date}, - "te": {"$lte": end_date}, - "avail": {"$gte": 100}, - } - }, - { - "$group": { - "_id": "$_id", - "net": {"$first": "$net"}, - "sta": {"$first": "$sta"}, - "loc": {"$first": "$loc"}, - "cha": {"$first": "$cha"}, - "qlt": {"$first": "$qlt"}, - "srate": {"$first": {"$arrayElemAt": ["$srate", 0]}}, - "ts": {"$first": "$ts"}, - "te": {"$first": "$te"}, - "created": {"$first": "$created"}, - "restr": {"$first": "OPEN"}, - "count": {"$first": 1}, - } - }, - {"$merge": {"into": "availability", "on": "_id", "whenMatched": "replace"}}, - ] - - logger.info(f"Running daily update for net:{networks} sta:{stations} ts:{start_date} te:{end_date}") - self.db.daily_streams.aggregate(pipeline) - - def update_availability_continuous( - self, - networks: str, - stations: str, - start_date: datetime, - end_date: datetime, - ): - """ - Equivalent to `updateAvailabilityContinuous` in views/main.js - """ - pipeline = [ - { - "$match": { - "net": {"$regex": networks}, - "sta": {"$regex": stations}, - "ts": {"$gte": start_date}, - "te": {"$lte": end_date}, - "avail": {"$lt": 100}, - } - }, - { - "$lookup": { - "from": "c_segments", - "localField": "_id", - "foreignField": "streamId", - "as": "c_segments", - } - }, - {"$unwind": "$c_segments"}, - { - "$group": { - "_id": "$c_segments._id", - "net": {"$first": "$net"}, - "sta": {"$first": "$sta"}, - "loc": {"$first": "$loc"}, - "cha": {"$first": "$cha"}, - "qlt": {"$first": "$qlt"}, - "srate": {"$first": "$c_segments.srate"}, - "ts": {"$first": "$c_segments.ts"}, - "te": {"$first": "$c_segments.te"}, - "created": {"$first": "$created"}, - "restr": {"$first": "OPEN"}, - "count": {"$first": 1}, - } - }, - {"$merge": {"into": "availability", "on": "_id", "whenMatched": "replace"}}, - ] - - logger.info(f"Running continuous update for net:{networks} sta:{stations} ts:{start_date} te:{end_date}") - self.db.daily_streams.aggregate(pipeline) - - def run_updates( - self, - networks: str = "^.*$", - stations: str = "^.*$", - start_date: Optional[datetime] = None, - end_date: Optional[datetime] = None, - days_back: Optional[int] = None, - ): - """ - Main runner function replicating the logic at the bottom of main.js. - """ - now = datetime.utcnow() - if days_back is not None: - # Replicate getPastDate behavior (end_date isn't changed if daysBack is passed in JS script context, but we handle it uniformly) - # Actually, in JS: `if (typeof daysBack !== "undefined") ts = getPastDate(daysBack);` - # and te is kept as getPastDate(0) - target_start = now - timedelta(days=days_back) - start_date = datetime(target_start.year, target_start.month, target_start.day) - end_date = end_date or datetime(now.year, now.month, now.day) - else: - if start_date is None: - target_start = now - timedelta(days=1) - start_date = datetime(target_start.year, target_start.month, target_start.day) - if end_date is None: - end_date = datetime(now.year, now.month, now.day) - - logger.info( - f"Processing WFCatalog entries using networks: '{networks}', stations: '{stations}', start: '{start_date.isoformat()}', end: '{end_date.isoformat()}' started!" - ) - - self.update_availability_daily(networks, stations, start_date, end_date) - self.update_availability_continuous(networks, stations, start_date, end_date) - - logger.info( - f"Processing WFCatalog entries using networks: '{networks}', stations: '{stations}', start: '{start_date.isoformat()}', end: '{end_date.isoformat()}' completed!" - ) +import logging +from datetime import datetime, timedelta +from typing import Optional + +from pymongo import MongoClient +from pymongo.database import Database + +logger = logging.getLogger(__name__) + + +class AvailabilityUpdater: + def __init__(self, db: Database): + self.db = db + + def update_availability_daily( + self, + networks: str, + stations: str, + start_date: datetime, + end_date: datetime, + ): + """ + Equivalent to `updateAvailabilityDaily` in views/main.js + """ + pipeline = [ + { + "$match": { + "net": {"$regex": networks}, + "sta": {"$regex": stations}, + "ts": {"$gte": start_date}, + "te": {"$lte": end_date}, + "avail": {"$gte": 100}, + } + }, + { + "$group": { + "_id": "$_id", + "net": {"$first": "$net"}, + "sta": {"$first": "$sta"}, + "loc": {"$first": "$loc"}, + "cha": {"$first": "$cha"}, + "qlt": {"$first": "$qlt"}, + "srate": {"$first": {"$arrayElemAt": ["$srate", 0]}}, + "ts": {"$first": "$ts"}, + "te": {"$first": "$te"}, + "created": {"$first": "$created"}, + "restr": {"$first": "OPEN"}, + "count": {"$first": 1}, + } + }, + {"$merge": {"into": "availability", "on": "_id", "whenMatched": "replace"}}, + ] + + logger.info(f"Running daily update for net:{networks} sta:{stations} ts:{start_date} te:{end_date}") + self.db.daily_streams.aggregate(pipeline) + + def update_availability_continuous( + self, + networks: str, + stations: str, + start_date: datetime, + end_date: datetime, + ): + """ + Equivalent to `updateAvailabilityContinuous` in views/main.js + """ + pipeline = [ + { + "$match": { + "net": {"$regex": networks}, + "sta": {"$regex": stations}, + "ts": {"$gte": start_date}, + "te": {"$lte": end_date}, + "avail": {"$lt": 100}, + } + }, + { + "$lookup": { + "from": "c_segments", + "localField": "_id", + "foreignField": "streamId", + "as": "c_segments", + } + }, + {"$unwind": "$c_segments"}, + { + "$group": { + "_id": "$c_segments._id", + "net": {"$first": "$net"}, + "sta": {"$first": "$sta"}, + "loc": {"$first": "$loc"}, + "cha": {"$first": "$cha"}, + "qlt": {"$first": "$qlt"}, + "srate": {"$first": "$c_segments.srate"}, + "ts": {"$first": "$c_segments.ts"}, + "te": {"$first": "$c_segments.te"}, + "created": {"$first": "$created"}, + "restr": {"$first": "OPEN"}, + "count": {"$first": 1}, + } + }, + {"$merge": {"into": "availability", "on": "_id", "whenMatched": "replace"}}, + ] + + logger.info(f"Running continuous update for net:{networks} sta:{stations} ts:{start_date} te:{end_date}") + self.db.daily_streams.aggregate(pipeline) + + def run_updates( + self, + networks: str = "^.*$", + stations: str = "^.*$", + start_date: Optional[datetime] = None, + end_date: Optional[datetime] = None, + days_back: Optional[int] = None, + ): + """ + Main runner function replicating the logic at the bottom of main.js. + """ + now = datetime.utcnow() + if days_back is not None: + # Replicate getPastDate behavior (end_date isn't changed if daysBack is passed in JS script context, but we handle it uniformly) + # Actually, in JS: `if (typeof daysBack !== "undefined") ts = getPastDate(daysBack);` + # and te is kept as getPastDate(0) + target_start = now - timedelta(days=days_back) + start_date = datetime(target_start.year, target_start.month, target_start.day) + end_date = end_date or datetime(now.year, now.month, now.day) + else: + if start_date is None: + target_start = now - timedelta(days=1) + start_date = datetime(target_start.year, target_start.month, target_start.day) + if end_date is None: + end_date = datetime(now.year, now.month, now.day) + + logger.info( + f"Processing WFCatalog entries using networks: '{networks}', stations: '{stations}', start: '{start_date.isoformat()}', end: '{end_date.isoformat()}' started!" + ) + + self.update_availability_daily(networks, stations, start_date, end_date) + self.update_availability_continuous(networks, stations, start_date, end_date) + + logger.info( + f"Processing WFCatalog entries using networks: '{networks}', stations: '{stations}', start: '{start_date.isoformat()}', end: '{end_date.isoformat()}' completed!" + ) diff --git a/apps/wfcatalog_client.py b/apps/wfcatalog_client.py index 35166ce..89bcc17 100644 --- a/apps/wfcatalog_client.py +++ b/apps/wfcatalog_client.py @@ -15,6 +15,7 @@ from typing import Any from .restriction import RestrictionInventory +from .globals import Error RESTRICTED_INVENTORY = None @@ -113,8 +114,9 @@ def mongo_request(paramslist: list[dict]) -> tuple[list[dict], list[list[Any]]]: # qry["te"] = te qries.append(qry) - - cursor = db.availability.find(qry, projection=PROJ) + + # LAYER 4: Cap the MongoDB cursor + cursor = db.availability.find(qry, projection=PROJ).limit(settings.max_data_rows + 1) # Eager query execution instead of a cursor result += _apply_restricted_bit(cursor, params.get("includerestricted", False)) @@ -251,6 +253,19 @@ def _expand_wildcards(params: dict) -> dict: _cha += [e for e in _loc if fnmatch(e.split(".")[3], cha)] # Replace original query parameters with ones filtered out from the cached inventory. + stream_count = len(_cha) + + # LAYER 3: Breadth Check + # Rule A: Hard limit on number of streams + if stream_count > settings.max_streams: + raise ValueError(Error.TOO_MANY_STREAMS) + + # Rule B: Broad query (many streams + no time range) + # Using 500 as the "broadness" threshold as discussed + no_time_range = params.get("start") is None and params.get("end") is None + if stream_count > 500 and no_time_range: + raise ValueError(Error.BROAD_QUERY) + params["network"] = ",".join(set([e.split(".")[0] for e in _cha])) params["station"] = ( "*" diff --git a/config.py.sample b/config.py.sample index dc482e7..9a0425d 100644 --- a/config.py.sample +++ b/config.py.sample @@ -1,70 +1,70 @@ -import os - - -class Config: - - """ - Configure Flask application from environment vars. - Preconfigured values are set from: RUNMODE=test or RUNMODE=production - Each parameter can be overriden directly by an environment variable. - """ - - RUNMODE = os.environ.get("RUNMODE") - - if RUNMODE == "production": - # WFCatalog MongoDB - MONGODB_HOST = "host.docker.internal" - MONGODB_PORT = 27017 - MONGODB_USR = "" - MONGODB_PWD = "" - MONGODB_NAME = "wfrepo" - # FDSNWS-Station cache source - FDSNWS_STATION_URL = "https://orfeus-eu.org/fdsnws/station/1/query" - # Cache host (localhost or container name) - CACHE_HOST = "cache" - CACHE_PORT = 6379 - CACHE_INVENTORY_KEY = "inventory" - CACHE_INVENTORY_PERIOD = 0 - CACHE_RESP_PERIOD = 1200 - elif RUNMODE == "test": - # WFCatalog MongoDB - MONGODB_HOST = "localhost" - MONGODB_PORT = 27017 - MONGODB_USR = "" - MONGODB_PWD = "" - MONGODB_NAME = "wfrepo" - # FDSNWS-Station cache source - FDSNWS_STATION_URL = "https://orfeus-eu.org/fdsnws/station/1/query" - # Cache host (localhost or container name) - CACHE_HOST = "localhost" - CACHE_PORT = 6379 - CACHE_INVENTORY_KEY = "inventory" - CACHE_INVENTORY_PERIOD = 0 - CACHE_RESP_PERIOD = 1200 - - try: - MONGODB_HOST = os.environ.get("MONGODB_HOST") or MONGODB_HOST - MONGODB_PORT = os.environ.get("MONGODB_PORT") or MONGODB_PORT - MONGODB_USR = os.environ.get("MONGODB_USR") or MONGODB_USR - MONGODB_PWD = os.environ.get("MONGODB_PWD") or MONGODB_PWD - MONGODB_NAME = os.environ.get("MONGODB_NAME") or MONGODB_NAME - FDSNWS_STATION_URL = os.environ.get("FDSNWS_STATION_URL") or FDSNWS_STATION_URL - CACHE_HOST = os.environ.get("CACHE_HOST") or CACHE_HOST - CACHE_PORT = os.environ.get("CACHE_PORT") or CACHE_PORT - CACHE_INVENTORY_KEY = ( - os.environ.get("CACHE_INVENTORY_KEY") or CACHE_INVENTORY_KEY - ) - CACHE_INVENTORY_PERIOD = ( - os.environ.get("CACHE_INVENTORY_PERIOD") or CACHE_INVENTORY_PERIOD - ) - CACHE_RESP_PERIOD = ( - os.environ.get("CACHE_SHORT_INV_PERIOD") or CACHE_RESP_PERIOD - ) - # Sentry configuration (optional) - SENTRY_DSN = os.environ.get("SENTRY_DSN") or "" - SENTRY_TRACES_SAMPLE_RATE = float( - os.environ.get("SENTRY_TRACES_SAMPLE_RATE") or "1.0" - ) - except NameError: - print("Missing environment variables.") - raise +import os + + +class Config: + + """ + Configure Flask application from environment vars. + Preconfigured values are set from: RUNMODE=test or RUNMODE=production + Each parameter can be overriden directly by an environment variable. + """ + + RUNMODE = os.environ.get("RUNMODE") + + if RUNMODE == "production": + # WFCatalog MongoDB + MONGODB_HOST = "host.docker.internal" + MONGODB_PORT = 27017 + MONGODB_USR = "" + MONGODB_PWD = "" + MONGODB_NAME = "wfrepo" + # FDSNWS-Station cache source + FDSNWS_STATION_URL = "https://orfeus-eu.org/fdsnws/station/1/query" + # Cache host (localhost or container name) + CACHE_HOST = "cache" + CACHE_PORT = 6379 + CACHE_INVENTORY_KEY = "inventory" + CACHE_INVENTORY_PERIOD = 0 + CACHE_RESP_PERIOD = 1200 + elif RUNMODE == "test": + # WFCatalog MongoDB + MONGODB_HOST = "localhost" + MONGODB_PORT = 27017 + MONGODB_USR = "" + MONGODB_PWD = "" + MONGODB_NAME = "wfrepo" + # FDSNWS-Station cache source + FDSNWS_STATION_URL = "https://orfeus-eu.org/fdsnws/station/1/query" + # Cache host (localhost or container name) + CACHE_HOST = "localhost" + CACHE_PORT = 6379 + CACHE_INVENTORY_KEY = "inventory" + CACHE_INVENTORY_PERIOD = 0 + CACHE_RESP_PERIOD = 1200 + + try: + MONGODB_HOST = os.environ.get("MONGODB_HOST") or MONGODB_HOST + MONGODB_PORT = os.environ.get("MONGODB_PORT") or MONGODB_PORT + MONGODB_USR = os.environ.get("MONGODB_USR") or MONGODB_USR + MONGODB_PWD = os.environ.get("MONGODB_PWD") or MONGODB_PWD + MONGODB_NAME = os.environ.get("MONGODB_NAME") or MONGODB_NAME + FDSNWS_STATION_URL = os.environ.get("FDSNWS_STATION_URL") or FDSNWS_STATION_URL + CACHE_HOST = os.environ.get("CACHE_HOST") or CACHE_HOST + CACHE_PORT = os.environ.get("CACHE_PORT") or CACHE_PORT + CACHE_INVENTORY_KEY = ( + os.environ.get("CACHE_INVENTORY_KEY") or CACHE_INVENTORY_KEY + ) + CACHE_INVENTORY_PERIOD = ( + os.environ.get("CACHE_INVENTORY_PERIOD") or CACHE_INVENTORY_PERIOD + ) + CACHE_RESP_PERIOD = ( + os.environ.get("CACHE_SHORT_INV_PERIOD") or CACHE_RESP_PERIOD + ) + # Sentry configuration (optional) + SENTRY_DSN = os.environ.get("SENTRY_DSN") or "" + SENTRY_TRACES_SAMPLE_RATE = float( + os.environ.get("SENTRY_TRACES_SAMPLE_RATE") or "1.0" + ) + except NameError: + print("Missing environment variables.") + raise diff --git a/docker-compose.yml b/docker-compose.yml index b6e8141..d8c1dd0 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -1,65 +1,68 @@ -version: '3' - -services: - cache: - restart: always - image: redis:7.0-alpine - container_name: fdsnws-availability-cache - network_mode: "host" - command: redis-server --save 20 1 --loglevel warning - cacher: - build: - context: ./ - dockerfile: Dockerfile.cacher - restart: always - container_name: fdsnws-availability-cacher - network_mode: "host" - environment: - RUNMODE: production - # Host Networking: Redis is on localhost - CACHE_HOST: "127.0.0.1" - # Limit OpenBLAS threads (Fix for Cacher Crash) - OPENBLAS_NUM_THREADS: 1 - MKL_NUM_THREADS: 1 - NUMEXPR_NUM_THREADS: 1 - OMP_NUM_THREADS: 1 - ulimits: - nproc: 65535 - security_opt: - - seccomp:unconfined - api: - build: - context: ./ - dockerfile: Dockerfile.api - restart: always - # Worker Configuration: - # - Default: 1 worker (most stable for resource-constrained servers) - # - Moderate: 2-3 workers (recommended if no thread creation issues) - # - High-performance: (2 × CPU cores) + 1 workers - # See README.md "Performance Tuning" section for details - command: gunicorn --bind 0.0.0.0:9001 --workers 1 --timeout 600 start:app - container_name: fdsnws-availability-api - network_mode: "host" - environment: - RUNMODE: production - # Host Networking: Redis is on localhost - CACHE_HOST: "127.0.0.1" - # Gateway IP (Update if needed) - MONGODB_HOST: ${MONGODB_HOST:-127.0.0.1} - MONGODB_PORT: ${MONGODB_PORT:-27017} - MONGODB_USR: ${MONGODB_USR:-wfrepouser} - MONGODB_PWD: ${MONGODB_PWD:-2023wf} - MONGODB_NAME: ${MONGODB_NAME:-wfrepo} - FDSNWS_STATION_URL: "https://eida.gein.noa.gr/fdsnws/station/1/query" - # Limit OpenBLAS threads to prevent "pthread_create failed" on restricted servers - OPENBLAS_NUM_THREADS: 1 - MKL_NUM_THREADS: 1 - NUMEXPR_NUM_THREADS: 1 - OMP_NUM_THREADS: 1 - ulimits: - nproc: 65535 - nofile: - soft: 65535 - hard: 65535 - security_opt: - - seccomp:unconfined +version: '3' + +services: + cache: + restart: always + image: redis:7.0-alpine + container_name: fdsnws-availability-cache + network_mode: "host" + command: redis-server --save 20 1 --loglevel warning + cacher: + build: + context: ./ + dockerfile: Dockerfile.cacher + restart: always + container_name: fdsnws-availability-cacher + network_mode: "host" + environment: + RUNMODE: production + # Host Networking: Redis is on localhost + CACHE_HOST: "127.0.0.1" + # Limit OpenBLAS threads (Fix for Cacher Crash) + OPENBLAS_NUM_THREADS: 1 + MKL_NUM_THREADS: 1 + NUMEXPR_NUM_THREADS: 1 + OMP_NUM_THREADS: 1 + ulimits: + nproc: 65535 + security_opt: + - seccomp:unconfined + api: + build: + context: ./ + dockerfile: Dockerfile.api + restart: always + # Worker Configuration: + # - Default: 1 worker (most stable for resource-constrained servers) + # - Moderate: 2-3 workers (recommended if no thread creation issues) + # - High-performance: (2 × CPU cores) + 1 workers + # See README.md "Performance Tuning" section for details + command: gunicorn --bind 0.0.0.0:9001 --workers 1 --timeout 600 start:app + container_name: fdsnws-availability-api + network_mode: "host" + environment: + RUNMODE: production + # Host Networking: Redis is on localhost + CACHE_HOST: "127.0.0.1" + # Gateway IP (Update if needed) + MONGODB_HOST: ${MONGODB_HOST:-127.0.0.1} + MONGODB_PORT: ${MONGODB_PORT:-27017} + MONGODB_USR: ${MONGODB_USR:-wfrepouser} + MONGODB_PWD: ${MONGODB_PWD:-2023wf} + MONGODB_NAME: ${MONGODB_NAME:-wfrepo} + FDSNWS_STATION_URL: "https://eida.gein.noa.gr/fdsnws/station/1/query" + # Limit OpenBLAS threads to prevent "pthread_create failed" on restricted servers + OPENBLAS_NUM_THREADS: 1 + MKL_NUM_THREADS: 1 + NUMEXPR_NUM_THREADS: 1 + OMP_NUM_THREADS: 1 + ulimits: + nproc: 65535 + nofile: + soft: 65535 + hard: 65535 + security_opt: + - seccomp:unconfined + mem_limit: 2g + memswap_limit: 2g + diff --git a/pyproject.toml b/pyproject.toml index f1940d4..24b3e1f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,36 +1,36 @@ -[build-system] -requires = ["setuptools>=61.0"] -build-backend = "setuptools.build_meta" - -[project] -name = "ws-availability" -version = "1.0.4" -description = "Add your description here" -readme = "README.md" -requires-python = ">=3.10" -dependencies = [ - "flask==2.3.2", - "gunicorn==20.1.0", - "obspy==1.3.1", - "pymongo==3.12.3", - "redis==4.4.4", - "requests==2.31.0", - "pydantic>=2.0.0", - "pydantic-settings>=2.12.0", - "sentry-sdk[flask]>=2.0.0", - "apscheduler>=3.11.2", -] - -[dependency-groups] -dev = [ - "pytest>=9.0.2", - "pytest-cov>=7.0.0", -] - -[tool.setuptools.packages.find] -where = ["."] -include = ["apps*"] -namespaces = false - -[tool.setuptools.package-data] -"*" = ["views/*", "templates/*"] +[build-system] +requires = ["setuptools>=61.0"] +build-backend = "setuptools.build_meta" + +[project] +name = "ws-availability" +version = "1.0.4" +description = "Add your description here" +readme = "README.md" +requires-python = ">=3.10" +dependencies = [ + "flask==2.3.2", + "gunicorn==20.1.0", + "obspy==1.3.1", + "pymongo==3.12.3", + "redis==4.4.4", + "requests==2.31.0", + "pydantic>=2.0.0", + "pydantic-settings>=2.12.0", + "sentry-sdk[flask]>=2.0.0", + "apscheduler>=3.11.2", +] + +[dependency-groups] +dev = [ + "pytest>=9.0.2", + "pytest-cov>=7.0.0", +] + +[tool.setuptools.packages.find] +where = ["."] +include = ["apps*"] +namespaces = false + +[tool.setuptools.package-data] +"*" = ["views/*", "templates/*"] diff --git a/start.py b/start.py index abc4192..8678991 100644 --- a/start.py +++ b/start.py @@ -1,144 +1,144 @@ -import logging -import os - -import sentry_sdk -from flask import Flask, make_response, render_template - -from apps.globals import VERSION -from apps.root import output -from config import Config - - -def before_send(event, hint): - """ - Scrub sensitive data from Sentry events before sending. - This prevents passwords, API keys, and other secrets from being exposed. - """ - # List of sensitive field names to scrub (case-insensitive) - sensitive_keys = { - "password", "passwd", "pwd", "secret", "api_key", "apikey", - "token", "auth", "authorization", "credentials", "private_key", - "access_token", "refresh_token", "session", "cookie" - } - - def scrub_dict(data): - """Recursively scrub sensitive data from dictionaries.""" - if not isinstance(data, dict): - return - - for key in list(data.keys()): - key_lower = str(key).lower() - # Check if key contains any sensitive keyword - if any(sensitive in key_lower for sensitive in sensitive_keys): - data[key] = "[Filtered]" - elif isinstance(data[key], dict): - scrub_dict(data[key]) - elif isinstance(data[key], list): - for item in data[key]: - if isinstance(item, dict): - scrub_dict(item) - - # Scrub request data (including IP headers) - if "request" in event: - scrub_dict(event["request"]) - if "headers" in event["request"]: - headers = event["request"]["headers"] - # Remove common IP headers - for ip_header in ["X-Forwarded-For", "X-Real-Ip", "True-Client-Ip", "Cf-Connecting-Ip"]: - if ip_header in headers: - headers[ip_header] = "[Filtered]" - # also check lowercase since headers are often lowercase - if ip_header.lower() in headers: - headers[ip_header.lower()] = "[Filtered]" - - # Sometimes IP is in env - if "env" in event["request"] and "REMOTE_ADDR" in event["request"]["env"]: - event["request"]["env"]["REMOTE_ADDR"] = "[Filtered]" - - # Scrub extra context - if "extra" in event: - scrub_dict(event["extra"]) - - # Aggressively clear user IP - if "user" not in event or event["user"] is None: - event["user"] = {} - - # Explicitly set IP to a generic value so Sentry doesn't try to auto-fill it - event["user"]["ip_address"] = "0.0.0.0" - scrub_dict(event["user"]) - - # Scrub breadcrumbs - if "breadcrumbs" in event: - for breadcrumb in event["breadcrumbs"].get("values", []): - scrub_dict(breadcrumb) - - # Scrub local variables from stack traces - if "exception" in event: - for exception in event["exception"].get("values", []): - if "stacktrace" in exception: - for frame in exception["stacktrace"].get("frames", []): - if "vars" in frame: - scrub_dict(frame["vars"]) - - return event - - -# Initialize Sentry before creating the Flask app -if Config.SENTRY_DSN: - sentry_sdk.init( - dsn=Config.SENTRY_DSN, - traces_sample_rate=Config.SENTRY_TRACES_SAMPLE_RATE, - # Disable default PII collection (IP, headers, cookies) for GDPR compliance - send_default_pii=False, - # Scrub sensitive data before sending - before_send=before_send, - ) - -app = Flask(__name__) - -FMT = "[%(asctime)s] %(levelname)s [%(filename)s:%(lineno)d] [%(funcName)s] %(message)s" -LOGLEVEL = logging.INFO if os.environ.get("RUNMODE") == "production" else logging.DEBUG -logging.basicConfig(format=FMT, level=LOGLEVEL) - -app.config.from_object(Config) -if app.config["RUNMODE"]: - app.logger.debug("Configuration set with RUNMODE=%s", app.config["RUNMODE"]) - -# ************************************************************************ -# **************************** SERVICE ROUTES **************************** -# ************************************************************************ - - -@app.route("/extent", methods=["GET", "POST"]) -def extent(): - return output() - - -@app.route("/query", methods=["GET", "POST"]) -def query(): - return output() - - -@app.route("/application.wadl") -def wadl(): - template = render_template("wadl.xml") - response = make_response(template) - response.headers["Content-Type"] = "application/xml" - return response - - -@app.route("/version", strict_slashes=False) -def version(): - response = make_response(VERSION) - response.headers["Content-Type"] = "text/plain" - return response - - -@app.route("/") -def doc(): - return render_template("doc.html") - - -# **** MAIN **** -if __name__ == "__main__": - app.run() +import logging +import os + +import sentry_sdk +from flask import Flask, make_response, render_template + +from apps.globals import VERSION +from apps.root import output +from config import Config + + +def before_send(event, hint): + """ + Scrub sensitive data from Sentry events before sending. + This prevents passwords, API keys, and other secrets from being exposed. + """ + # List of sensitive field names to scrub (case-insensitive) + sensitive_keys = { + "password", "passwd", "pwd", "secret", "api_key", "apikey", + "token", "auth", "authorization", "credentials", "private_key", + "access_token", "refresh_token", "session", "cookie" + } + + def scrub_dict(data): + """Recursively scrub sensitive data from dictionaries.""" + if not isinstance(data, dict): + return + + for key in list(data.keys()): + key_lower = str(key).lower() + # Check if key contains any sensitive keyword + if any(sensitive in key_lower for sensitive in sensitive_keys): + data[key] = "[Filtered]" + elif isinstance(data[key], dict): + scrub_dict(data[key]) + elif isinstance(data[key], list): + for item in data[key]: + if isinstance(item, dict): + scrub_dict(item) + + # Scrub request data (including IP headers) + if "request" in event: + scrub_dict(event["request"]) + if "headers" in event["request"]: + headers = event["request"]["headers"] + # Remove common IP headers + for ip_header in ["X-Forwarded-For", "X-Real-Ip", "True-Client-Ip", "Cf-Connecting-Ip"]: + if ip_header in headers: + headers[ip_header] = "[Filtered]" + # also check lowercase since headers are often lowercase + if ip_header.lower() in headers: + headers[ip_header.lower()] = "[Filtered]" + + # Sometimes IP is in env + if "env" in event["request"] and "REMOTE_ADDR" in event["request"]["env"]: + event["request"]["env"]["REMOTE_ADDR"] = "[Filtered]" + + # Scrub extra context + if "extra" in event: + scrub_dict(event["extra"]) + + # Aggressively clear user IP + if "user" not in event or event["user"] is None: + event["user"] = {} + + # Explicitly set IP to a generic value so Sentry doesn't try to auto-fill it + event["user"]["ip_address"] = "0.0.0.0" + scrub_dict(event["user"]) + + # Scrub breadcrumbs + if "breadcrumbs" in event: + for breadcrumb in event["breadcrumbs"].get("values", []): + scrub_dict(breadcrumb) + + # Scrub local variables from stack traces + if "exception" in event: + for exception in event["exception"].get("values", []): + if "stacktrace" in exception: + for frame in exception["stacktrace"].get("frames", []): + if "vars" in frame: + scrub_dict(frame["vars"]) + + return event + + +# Initialize Sentry before creating the Flask app +if Config.SENTRY_DSN: + sentry_sdk.init( + dsn=Config.SENTRY_DSN, + traces_sample_rate=Config.SENTRY_TRACES_SAMPLE_RATE, + # Disable default PII collection (IP, headers, cookies) for GDPR compliance + send_default_pii=False, + # Scrub sensitive data before sending + before_send=before_send, + ) + +app = Flask(__name__) + +FMT = "[%(asctime)s] %(levelname)s [%(filename)s:%(lineno)d] [%(funcName)s] %(message)s" +LOGLEVEL = logging.INFO if os.environ.get("RUNMODE") == "production" else logging.DEBUG +logging.basicConfig(format=FMT, level=LOGLEVEL) + +app.config.from_object(Config) +if app.config["RUNMODE"]: + app.logger.debug("Configuration set with RUNMODE=%s", app.config["RUNMODE"]) + +# ************************************************************************ +# **************************** SERVICE ROUTES **************************** +# ************************************************************************ + + +@app.route("/extent", methods=["GET", "POST"]) +def extent(): + return output() + + +@app.route("/query", methods=["GET", "POST"]) +def query(): + return output() + + +@app.route("/application.wadl") +def wadl(): + template = render_template("wadl.xml") + response = make_response(template) + response.headers["Content-Type"] = "application/xml" + return response + + +@app.route("/version", strict_slashes=False) +def version(): + response = make_response(VERSION) + response.headers["Content-Type"] = "text/plain" + return response + + +@app.route("/") +def doc(): + return render_template("doc.html") + + +# **** MAIN **** +if __name__ == "__main__": + app.run() diff --git a/tests/test_issue60_protection.py b/tests/test_issue60_protection.py new file mode 100644 index 0000000..0388303 --- /dev/null +++ b/tests/test_issue60_protection.py @@ -0,0 +1,96 @@ +import unittest +from unittest.mock import MagicMock, patch +import os +import sys + +# Ensure apps is in the path +sys.path.append(os.getcwd()) + +from apps.wfcatalog_client import _expand_wildcards, mongo_request +from apps.settings import settings +from apps.globals import Error + +class TestIssue60Protection(unittest.TestCase): + + @patch("apps.wfcatalog_client.RESTRICTED_INVENTORY") + def test_max_streams_limit(self, mock_inv): + """Test Rule A: Hard limit on number of streams (MAX_STREAMS)""" + # Setup mock inventory with 2500 streams + # _expand_wildcards uses RESTRICTED_INVENTORY._inv to filter + # but wait, let's look at _expand_wildcards implementation again + + # for net in params["network"].split(","): + # _net += [e for e in RESTRICTED_INVENTORY._inv if fnmatch(e.split(".")[0], net)] + + mock_inv._inv = [f"NET.STA.00.CH{i}" for i in range(2500)] + + params = { + "network": "NET", + "station": "*", + "location": "*", + "channel": "*", + "start": None, + "end": None + } + + # This should raise ValueError due to stream count (2500 > 2000) + with self.assertRaises(ValueError) as cm: + _expand_wildcards(params) + + self.assertEqual(str(cm.exception), Error.TOO_MANY_STREAMS) + + @patch("apps.wfcatalog_client.RESTRICTED_INVENTORY") + def test_broad_query_limit(self, mock_inv): + """Test Rule B: Broad query rejection (many streams + no time range)""" + # Setup mock inventory with 600 streams + mock_inv._inv = [f"NET.STA.00.CH{i}" for i in range(600)] + + params = { + "network": "NET", + "station": "*", + "location": "*", + "channel": "*", + "start": None, + "end": None + } + + # This should raise ValueError because 600 > 500 AND no time range + with self.assertRaises(ValueError) as cm: + _expand_wildcards(params) + + self.assertEqual(str(cm.exception), Error.BROAD_QUERY) + + # Now add a time range - it should PASS the breadth check + params["start"] = "2024-01-01" + params["end"] = "2024-01-02" + + # This should NOT raise ValueError from breadth check + try: + _expand_wildcards(params) + except ValueError as e: + if str(e) == Error.BROAD_QUERY: + self.fail("Broad query check fired even with time range") + + @patch("apps.wfcatalog_client.get_db_client") + def test_mongodb_cursor_limit(self, mock_get_db): + """Test Layer 4: MongoDB cursor .limit() is applied""" + mock_db = MagicMock() + mock_get_db.return_value.get_database.return_value = mock_db + + # Mock _expand_wildcards to avoid Redis dependency + with patch("apps.wfcatalog_client._expand_wildcards") as mock_expand: + mock_expand.return_value = { + "network": "NET", "station": "STA", "location": "*", "channel": "*", + "quality": "*", "start": None, "end": None + } + + # Mock _apply_restricted_bit to return empty list + with patch("apps.wfcatalog_client._apply_restricted_bit", return_value=[]): + + mongo_request([{"network": "NET"}]) + + # Check if .limit() was called with settings.max_data_rows + 1 + mock_db.availability.find.return_value.limit.assert_called_with(settings.max_data_rows + 1) + +if __name__ == "__main__": + unittest.main() diff --git a/tests/test_settings.py b/tests/test_settings.py index 7b81e74..da735e1 100644 --- a/tests/test_settings.py +++ b/tests/test_settings.py @@ -1,42 +1,42 @@ -import os -import pytest -from apps.settings import Settings - -class TestSettings: - def test_default_values(self): - """Test authentication defaults for localhost/test mode""" - # Unset env vars to ensure we test defaults - if "RUNMODE" in os.environ: del os.environ["RUNMODE"] - - settings = Settings() - assert settings.runmode == "test" - assert settings.mongodb_host == "localhost" - assert settings.fdsnws_station_url == "https://orfeus-eu.org/fdsnws/station/1/query" - - def test_production_override(self): - """Test that production mode no longer overrides cache_host (host networking)""" - os.environ["RUNMODE"] = "production" - # Ensure we don't have overrides set - if "MONGODB_HOST" in os.environ: del os.environ["MONGODB_HOST"] - if "CACHE_HOST" in os.environ: del os.environ["CACHE_HOST"] - - settings = Settings() - assert settings.runmode == "production" - # We removed the auto-switch to host.docker.internal for Linux compatibility - assert settings.mongodb_host == "localhost" - # Host networking: cache_host stays as localhost (no longer auto-changed to "cache") - assert settings.cache_host == "localhost" - - del os.environ["RUNMODE"] - - def test_production_explicit_override(self): - """Test that explicit env vars are respected even in production""" - os.environ["RUNMODE"] = "production" - os.environ["MONGODB_HOST"] = "custom-mongo" - - settings = Settings() - assert settings.runmode == "production" - assert settings.mongodb_host == "custom-mongo" - - del os.environ["RUNMODE"] - del os.environ["MONGODB_HOST"] +import os +import pytest +from apps.settings import Settings + +class TestSettings: + def test_default_values(self): + """Test authentication defaults for localhost/test mode""" + # Unset env vars to ensure we test defaults + if "RUNMODE" in os.environ: del os.environ["RUNMODE"] + + settings = Settings() + assert settings.runmode == "test" + assert settings.mongodb_host == "localhost" + assert settings.fdsnws_station_url == "https://orfeus-eu.org/fdsnws/station/1/query" + + def test_production_override(self): + """Test that production mode no longer overrides cache_host (host networking)""" + os.environ["RUNMODE"] = "production" + # Ensure we don't have overrides set + if "MONGODB_HOST" in os.environ: del os.environ["MONGODB_HOST"] + if "CACHE_HOST" in os.environ: del os.environ["CACHE_HOST"] + + settings = Settings() + assert settings.runmode == "production" + # We removed the auto-switch to host.docker.internal for Linux compatibility + assert settings.mongodb_host == "localhost" + # Host networking: cache_host stays as localhost (no longer auto-changed to "cache") + assert settings.cache_host == "localhost" + + del os.environ["RUNMODE"] + + def test_production_explicit_override(self): + """Test that explicit env vars are respected even in production""" + os.environ["RUNMODE"] = "production" + os.environ["MONGODB_HOST"] = "custom-mongo" + + settings = Settings() + assert settings.runmode == "production" + assert settings.mongodb_host == "custom-mongo" + + del os.environ["RUNMODE"] + del os.environ["MONGODB_HOST"] diff --git a/tests/test_updater.py b/tests/test_updater.py index f6f3e87..b4a378a 100644 --- a/tests/test_updater.py +++ b/tests/test_updater.py @@ -1,127 +1,127 @@ -import unittest -from datetime import datetime -from unittest.mock import MagicMock, call - -from apps.updater import AvailabilityUpdater - - -class TestAvailabilityUpdater(unittest.TestCase): - def setUp(self): - self.mock_db = MagicMock() - self.updater = AvailabilityUpdater(self.mock_db) - - def test_update_availability_daily_pipeline(self): - """ - Test that update_availability_daily calls aggregate with the correct pipeline. - """ - start_date = datetime(2023, 3, 23) - end_date = datetime(2023, 3, 24) - networks = "NL" - stations = "HGN" - - self.updater.update_availability_daily(networks, stations, start_date, end_date) - - # Retrieve the pipeline that was passed to aggregate - self.mock_db.daily_streams.aggregate.assert_called_once() - pipeline = self.mock_db.daily_streams.aggregate.call_args[0][0] - - # Verify pipeline structure exactly matches what we expect from main.js - expected_match = { - "$match": { - "net": {"$regex": networks}, - "sta": {"$regex": stations}, - "ts": {"$gte": start_date}, - "te": {"$lte": end_date}, - "avail": {"$gte": 100}, - } - } - self.assertEqual(pipeline[0], expected_match) - - expected_group = { - "$group": { - "_id": "$_id", - "net": {"$first": "$net"}, - "sta": {"$first": "$sta"}, - "loc": {"$first": "$loc"}, - "cha": {"$first": "$cha"}, - "qlt": {"$first": "$qlt"}, - "srate": {"$first": {"$arrayElemAt": ["$srate", 0]}}, - "ts": {"$first": "$ts"}, - "te": {"$first": "$te"}, - "created": {"$first": "$created"}, - "restr": {"$first": "OPEN"}, - "count": {"$first": 1}, - } - } - self.assertEqual(pipeline[1], expected_group) - - expected_merge = { - "$merge": {"into": "availability", "on": "_id", "whenMatched": "replace"} - } - self.assertEqual(pipeline[2], expected_merge) - - def test_update_availability_continuous_pipeline(self): - """ - Test that update_availability_continuous calls aggregate with the correct pipeline. - """ - start_date = datetime(2023, 1, 1) - end_date = datetime(2023, 2, 1) - networks = "^.*$" - stations = "^.*$" - - self.updater.update_availability_continuous(networks, stations, start_date, end_date) - - # Retrieve the pipeline that was passed to aggregate - self.mock_db.daily_streams.aggregate.assert_called_once() - pipeline = self.mock_db.daily_streams.aggregate.call_args[0][0] - - expected_match = { - "$match": { - "net": {"$regex": networks}, - "sta": {"$regex": stations}, - "ts": {"$gte": start_date}, - "te": {"$lte": end_date}, - "avail": {"$lt": 100}, - } - } - self.assertEqual(pipeline[0], expected_match) - - expected_lookup = { - "$lookup": { - "from": "c_segments", - "localField": "_id", - "foreignField": "streamId", - "as": "c_segments", - } - } - self.assertEqual(pipeline[1], expected_lookup) - - expected_unwind = {"$unwind": "$c_segments"} - self.assertEqual(pipeline[2], expected_unwind) - - expected_group = { - "$group": { - "_id": "$c_segments._id", - "net": {"$first": "$net"}, - "sta": {"$first": "$sta"}, - "loc": {"$first": "$loc"}, - "cha": {"$first": "$cha"}, - "qlt": {"$first": "$qlt"}, - "srate": {"$first": "$c_segments.srate"}, - "ts": {"$first": "$c_segments.ts"}, - "te": {"$first": "$c_segments.te"}, - "created": {"$first": "$created"}, - "restr": {"$first": "OPEN"}, - "count": {"$first": 1}, - } - } - self.assertEqual(pipeline[3], expected_group) - - expected_merge = { - "$merge": {"into": "availability", "on": "_id", "whenMatched": "replace"} - } - self.assertEqual(pipeline[4], expected_merge) - - -if __name__ == "__main__": - unittest.main() +import unittest +from datetime import datetime +from unittest.mock import MagicMock, call + +from apps.updater import AvailabilityUpdater + + +class TestAvailabilityUpdater(unittest.TestCase): + def setUp(self): + self.mock_db = MagicMock() + self.updater = AvailabilityUpdater(self.mock_db) + + def test_update_availability_daily_pipeline(self): + """ + Test that update_availability_daily calls aggregate with the correct pipeline. + """ + start_date = datetime(2023, 3, 23) + end_date = datetime(2023, 3, 24) + networks = "NL" + stations = "HGN" + + self.updater.update_availability_daily(networks, stations, start_date, end_date) + + # Retrieve the pipeline that was passed to aggregate + self.mock_db.daily_streams.aggregate.assert_called_once() + pipeline = self.mock_db.daily_streams.aggregate.call_args[0][0] + + # Verify pipeline structure exactly matches what we expect from main.js + expected_match = { + "$match": { + "net": {"$regex": networks}, + "sta": {"$regex": stations}, + "ts": {"$gte": start_date}, + "te": {"$lte": end_date}, + "avail": {"$gte": 100}, + } + } + self.assertEqual(pipeline[0], expected_match) + + expected_group = { + "$group": { + "_id": "$_id", + "net": {"$first": "$net"}, + "sta": {"$first": "$sta"}, + "loc": {"$first": "$loc"}, + "cha": {"$first": "$cha"}, + "qlt": {"$first": "$qlt"}, + "srate": {"$first": {"$arrayElemAt": ["$srate", 0]}}, + "ts": {"$first": "$ts"}, + "te": {"$first": "$te"}, + "created": {"$first": "$created"}, + "restr": {"$first": "OPEN"}, + "count": {"$first": 1}, + } + } + self.assertEqual(pipeline[1], expected_group) + + expected_merge = { + "$merge": {"into": "availability", "on": "_id", "whenMatched": "replace"} + } + self.assertEqual(pipeline[2], expected_merge) + + def test_update_availability_continuous_pipeline(self): + """ + Test that update_availability_continuous calls aggregate with the correct pipeline. + """ + start_date = datetime(2023, 1, 1) + end_date = datetime(2023, 2, 1) + networks = "^.*$" + stations = "^.*$" + + self.updater.update_availability_continuous(networks, stations, start_date, end_date) + + # Retrieve the pipeline that was passed to aggregate + self.mock_db.daily_streams.aggregate.assert_called_once() + pipeline = self.mock_db.daily_streams.aggregate.call_args[0][0] + + expected_match = { + "$match": { + "net": {"$regex": networks}, + "sta": {"$regex": stations}, + "ts": {"$gte": start_date}, + "te": {"$lte": end_date}, + "avail": {"$lt": 100}, + } + } + self.assertEqual(pipeline[0], expected_match) + + expected_lookup = { + "$lookup": { + "from": "c_segments", + "localField": "_id", + 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Share it by pasting it into the conversation. + +--- + +## 1. What is ws-availability? + +A Flask-based Python implementation of the +[FDSN Availability Web Service spec](http://www.fdsn.org/webservices/fdsnws-availability-1.0.pdf). + +It exposes two HTTP endpoints: +- `/fdsnws/availability/1/extent` — one row per channel, earliest/latest timestamps + timespan count +- `/fdsnws/availability/1/query` — individual time segments per channel + +**Stack:** Flask + gunicorn / MongoDB (data store) / Redis (restriction cache + response cache) / Docker Compose + +**Repositories:** +- Upstream: https://github.com/EIDA/ws-availability +- Active fork (feature/in-app-scheduler branch): https://github.com/NikolaosSokos/ws-availability/tree/feature/in-app-scheduler + +--- + +## 2. Key source files relevant to this issue + +| File | Role | +|------|------| +| `apps/utils.py` | Request validation, the `check_base_parameters()` guardrail | +| `apps/wfcatalog_client.py` | MongoDB query construction and execution, wildcard expansion | +| `apps/data_access_layer.py` | Row count check (`MAX_DATA_ROWS`), response formatting | +| `apps/globals.py` | Constants including `MAX_DATA_ROWS = 2_500_000` | +| `apps/root.py` | Request orchestration (GET/POST), calls validation then `get_output` | +| `docker-compose.yml` | 3 containers: `cache` (Redis), `cacher` (scheduler), `api` (gunicorn) | + +--- + +## 3. What happened (the incident) + +A user sent this request three times in quick succession: + +``` +GET /fdsnws/availability/1/extent?network=BW +``` + +No station, no channel, no time range. This matched approximately **4 million rows** in MongoDB. +Each request loaded all 4 million rows into Python RAM. With three concurrent requests, +the server's 8 GB RAM + SWAP was fully exhausted. The machine became unresponsive, +including SSH access. + +--- + +## 4. The three root causes + +### Root Cause A — The row limit check fires after memory is already consumed + +In `apps/data_access_layer.py`, `get_output()`: + +```python +data = collect_data(param_dic_list) # ← entire DB result loaded into RAM here +nrows = len(data) +if nrows > MAX_DATA_ROWS: # ← only checked AFTER memory is consumed + return overflow_error(...) # too late — damage already done +``` + +In `apps/wfcatalog_client.py`, `mongo_request()`: + +```python +cursor = db.availability.find(qry, projection=PROJ) # no .limit() on cursor +result += _apply_restricted_bit(cursor, ...) # plain for-loop, pulls ALL docs +``` + +`_apply_restricted_bit` is a plain Python `for` loop that iterates the entire MongoDB cursor +eagerly into a list. There is no `.limit()` on the cursor and no early exit. +The 2.5 million row check in `get_output` is therefore purely cosmetic — +it generates a 413 error, but only after the RAM is already gone. + +### Root Cause B — The existing guardrail has a logical gap + +In `apps/utils.py`, `check_base_parameters()`: + +```python +if params["network"] == params["station"] == params["channel"] == "*": + return error_param(params, Error.NO_SELECTION) +``` + +This only catches the case where **all three** are wildcards simultaneously. +The request `?network=BW` sets `network="BW"`, which makes the condition `False`. +So a query that selects every station, every channel, and every time period for an entire +network — potentially millions of rows — passes without complaint and hits MongoDB. + +### Root Cause C — The FDSN spec allows unbounded queries by design + +The FDSN spec lists network, station, location, channel, starttime, endtime as +"required parameters" but simultaneously defines their defaults as "any" (wildcard). +"Required" means implementations must *support* them, not that clients must *provide* them. + +A client can legally omit every parameter, and the spec-compliant response is to query +the entire database. Other FDSN implementations (e.g. Earthscope's dataselect, +which follows the same spec) reject requests with no time constraints rather than +attempting to serve the whole DB. This is a deliberate and justified policy departure. + +--- + +## 5. The complete request execution path for `?network=BW` + +**Step 1 — `apps/utils.py`, `check_base_parameters()`** +- The `NO_SELECTION` guard checks `net == sta == cha == "*"`. Since `net="BW"`, this is `False`. +- Request passes through. + +**Step 2 — `apps/wfcatalog_client.py`, `_expand_wildcards()`** +- Expands `network="BW"` against the Redis inventory (restriction cache). +- `station` and `channel` remain `"*"` — no filtering applied at this stage. +- MongoDB query is built with only `net: {$in: ["BW"]}`, no `sta` or `cha` filter. + +**Step 3 — `apps/wfcatalog_client.py`, `mongo_request()`** +- `db.availability.find(qry, projection=PROJ)` — no `.limit()`. +- `_apply_restricted_bit(cursor, ...)` iterates the full cursor, builds a Python list of ~4M rows. +- RAM fills up here. + +**Step 4 — `apps/data_access_layer.py`, `get_output()`** +- `collect_data()` returns. RAM is already consumed. +- `len(data) > MAX_DATA_ROWS` is True → returns 413. +- Too late. + +--- + +## 6. Bonus: a fourth risk (empty Redis inventory) + +If Redis is empty (cacher not yet run, or Redis restarted), `_expand_wildcards()` +returns empty lists for all parameters. This means `params["network"]` becomes an +empty string and the MongoDB query ends up with **no filters at all** — matching the +entire collection regardless of user input. This is a separate but related crash vector. + +--- + +## 7. Proposed solution — four independent layers + +These are ordered by implementation priority (do earlier = protects you while working on later). + +--- + +### Layer 1 — Docker memory limit (do today, zero code change) + +Add to `docker-compose.yml`: + +```yaml +api: + mem_limit: 2g + memswap_limit: 2g +``` + +This ensures that even if everything else fails, the host OS is never threatened. +The container gets OOM-killed, gunicorn restarts it, and the other containers keep running. +`memswap_limit` = `mem_limit` prevents swap usage, which just delays the kill while +making the machine progressively more sluggish. + +**Risk:** Zero. **Impact:** Immediate protection for the host. + +--- + +### Layer 2 — Cap the MongoDB cursor (one-line fix, makes the 413 meaningful) + +In `apps/wfcatalog_client.py`, `mongo_request()`: + +```python +# Before: +cursor = db.availability.find(qry, projection=PROJ) + +# After: +cursor = db.availability.find(qry, projection=PROJ).limit(MAX_DATA_ROWS + 1) +``` + +MongoDB enforces the cap in the DB engine. Python never allocates memory for excess rows. +The existing `len(data) > MAX_DATA_ROWS` check in `get_output` then works as intended — +if `MAX_DATA_ROWS + 1` rows come back, return 413 before any processing. + +**Risk:** Near zero. Has no effect on normal queries. + +--- + +### Layer 3 — Reject broad requests without a time range (policy fix) + +In `apps/utils.py`, `check_base_parameters()`, after the existing `NO_SELECTION` check: + +```python +# Require a time range if the query is broad (station and channel are wildcards) +no_time_range = params["start"] is None and params["end"] is None +broad_nslc = params["station"] == "*" and params["channel"] == "*" +if no_time_range and broad_nslc: + return error_param( + params, + "Request too broad: please provide starttime/endtime, " + "or specify at least a station or channel." + ) +``` + +This would have blocked `?network=BW` with a 400 before touching the DB. +Requests like `?network=BW&station=RMOA` or `?network=BW&start=2024-01-01&end=2024-02-01` +would still be allowed. + +**Trade-off:** Policy departure from literal FDSN spec. Users relying on network-only +queries will get a 400. Needs documentation in README and release notes. +Precedent: Earthscope dataselect does the same thing. + +--- + +### Layer 4 — Lower and externalise `MAX_DATA_ROWS` + +`MAX_DATA_ROWS = 2_500_000` in `globals.py` is hardcoded and too high. +At ~200–400 bytes per row after Python object overhead: +- 100,000 rows ≈ 40–80 MB (safe) +- 500,000 rows ≈ 200 MB (reasonable) +- 2,500,000 rows ≈ 1 GB per request (dangerous with concurrent requests) + +**Fix part 1:** Move to `apps/settings.py` as an env-var-backed field: + +```python +max_data_rows: int = Field(100_000, alias="MAX_DATA_ROWS") +``` + +**Fix part 2:** Remove from `globals.py`, import from `settings` everywhere it is used +(`data_access_layer.py`, `root.py`, error string in `globals.py`). + +This allows operators to tune the limit per deployment without code changes. + +**Trade-off:** Breaking change for users who relied on large responses. Needs communication. + +--- + +## 8. Recommended implementation order + +1. **Layer 1** — Docker mem_limit. Do this immediately. No code needed. +2. **Layer 2** — Cursor `.limit()`. One line, no user-visible change, makes 413 real. +3. **Layer 3** — Broad query rejection. Requires policy decision and documentation. +4. **Layer 4** — Lower and externalise `MAX_DATA_ROWS`. Most disruptive, do last. + +--- + +## 9. Files to change per layer + +| Layer | File(s) to change | +|-------|-------------------| +| 1 | `docker-compose.yml` | +| 2 | `apps/wfcatalog_client.py` | +| 3 | `apps/utils.py`, `apps/globals.py` (new error string) | +| 4 | `apps/globals.py`, `apps/settings.py`, `apps/data_access_layer.py`, `apps/root.py` | From ff575ba8e845d2ace59b37f9b207973c9107ff64 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Thu, 7 May 2026 15:53:41 +0300 Subject: [PATCH 17/50] fix(docker): change compose version to 2.4 for mem_limit support --- docker-compose.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docker-compose.yml b/docker-compose.yml index d8c1dd0..f80bc5c 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -1,4 +1,4 @@ -version: '3' +version: '2.4' services: cache: From b5607ca1c86179cd4aa8380b233ca5e57e77923d Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Thu, 7 May 2026 15:56:45 +0300 Subject: [PATCH 18/50] chore: add uv.lock back for docker build --- 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This commit untracks the file (it remains on disk for the maintainer) and extends .gitignore to cover common AI/agent tooling directories (.claude/, .cursor/, .aider*, CLAUDE.md, AGENTS.md, plans/) plus future briefing-style files (*-briefing.md, *briefing*.md). The file remains accessible in git history for anyone who needs the context. --- .gitignore | 11 ++ ws-availability-issue60-briefing.md | 248 ---------------------------- 2 files changed, 11 insertions(+), 248 deletions(-) delete mode 100644 ws-availability-issue60-briefing.md diff --git a/.gitignore b/.gitignore index 9812215..d6ae356 100644 --- a/.gitignore +++ b/.gitignore @@ -145,3 +145,14 @@ debug_api_state.py .agent .agents/ .gemini/ +.claude/ +.cursor/ +.aider* +CLAUDE.md +AGENTS.md +plans/ +*.agent.md +# Internal briefing / handover docs (not project documentation — README.md only) +*-briefing.md +*briefing*.md +ws-availability-issue60-briefing.md diff --git a/ws-availability-issue60-briefing.md b/ws-availability-issue60-briefing.md deleted file mode 100644 index 33c3106..0000000 --- a/ws-availability-issue60-briefing.md +++ /dev/null @@ -1,248 +0,0 @@ -# ws-availability — Issue #60 Briefing -## Memory Exhaustion from Unbounded Queries - -This document gives a developer agent full context to understand and work on Issue #60 -in the ws-availability service. Share it by pasting it into the conversation. - ---- - -## 1. What is ws-availability? - -A Flask-based Python implementation of the -[FDSN Availability Web Service spec](http://www.fdsn.org/webservices/fdsnws-availability-1.0.pdf). - -It exposes two HTTP endpoints: -- `/fdsnws/availability/1/extent` — one row per channel, earliest/latest timestamps + timespan count -- `/fdsnws/availability/1/query` — individual time segments per channel - -**Stack:** Flask + gunicorn / MongoDB (data store) / Redis (restriction cache + response cache) / Docker Compose - -**Repositories:** -- Upstream: https://github.com/EIDA/ws-availability -- Active fork (feature/in-app-scheduler branch): https://github.com/NikolaosSokos/ws-availability/tree/feature/in-app-scheduler - ---- - -## 2. Key source files relevant to this issue - -| File | Role | -|------|------| -| `apps/utils.py` | Request validation, the `check_base_parameters()` guardrail | -| `apps/wfcatalog_client.py` | MongoDB query construction and execution, wildcard expansion | -| `apps/data_access_layer.py` | Row count check (`MAX_DATA_ROWS`), response formatting | -| `apps/globals.py` | Constants including `MAX_DATA_ROWS = 2_500_000` | -| `apps/root.py` | Request orchestration (GET/POST), calls validation then `get_output` | -| `docker-compose.yml` | 3 containers: `cache` (Redis), `cacher` (scheduler), `api` (gunicorn) | - ---- - -## 3. What happened (the incident) - -A user sent this request three times in quick succession: - -``` -GET /fdsnws/availability/1/extent?network=BW -``` - -No station, no channel, no time range. This matched approximately **4 million rows** in MongoDB. -Each request loaded all 4 million rows into Python RAM. With three concurrent requests, -the server's 8 GB RAM + SWAP was fully exhausted. The machine became unresponsive, -including SSH access. - ---- - -## 4. The three root causes - -### Root Cause A — The row limit check fires after memory is already consumed - -In `apps/data_access_layer.py`, `get_output()`: - -```python -data = collect_data(param_dic_list) # ← entire DB result loaded into RAM here -nrows = len(data) -if nrows > MAX_DATA_ROWS: # ← only checked AFTER memory is consumed - return overflow_error(...) # too late — damage already done -``` - -In `apps/wfcatalog_client.py`, `mongo_request()`: - -```python -cursor = db.availability.find(qry, projection=PROJ) # no .limit() on cursor -result += _apply_restricted_bit(cursor, ...) # plain for-loop, pulls ALL docs -``` - -`_apply_restricted_bit` is a plain Python `for` loop that iterates the entire MongoDB cursor -eagerly into a list. There is no `.limit()` on the cursor and no early exit. -The 2.5 million row check in `get_output` is therefore purely cosmetic — -it generates a 413 error, but only after the RAM is already gone. - -### Root Cause B — The existing guardrail has a logical gap - -In `apps/utils.py`, `check_base_parameters()`: - -```python -if params["network"] == params["station"] == params["channel"] == "*": - return error_param(params, Error.NO_SELECTION) -``` - -This only catches the case where **all three** are wildcards simultaneously. -The request `?network=BW` sets `network="BW"`, which makes the condition `False`. -So a query that selects every station, every channel, and every time period for an entire -network — potentially millions of rows — passes without complaint and hits MongoDB. - -### Root Cause C — The FDSN spec allows unbounded queries by design - -The FDSN spec lists network, station, location, channel, starttime, endtime as -"required parameters" but simultaneously defines their defaults as "any" (wildcard). -"Required" means implementations must *support* them, not that clients must *provide* them. - -A client can legally omit every parameter, and the spec-compliant response is to query -the entire database. Other FDSN implementations (e.g. Earthscope's dataselect, -which follows the same spec) reject requests with no time constraints rather than -attempting to serve the whole DB. This is a deliberate and justified policy departure. - ---- - -## 5. The complete request execution path for `?network=BW` - -**Step 1 — `apps/utils.py`, `check_base_parameters()`** -- The `NO_SELECTION` guard checks `net == sta == cha == "*"`. Since `net="BW"`, this is `False`. -- Request passes through. - -**Step 2 — `apps/wfcatalog_client.py`, `_expand_wildcards()`** -- Expands `network="BW"` against the Redis inventory (restriction cache). -- `station` and `channel` remain `"*"` — no filtering applied at this stage. -- MongoDB query is built with only `net: {$in: ["BW"]}`, no `sta` or `cha` filter. - -**Step 3 — `apps/wfcatalog_client.py`, `mongo_request()`** -- `db.availability.find(qry, projection=PROJ)` — no `.limit()`. -- `_apply_restricted_bit(cursor, ...)` iterates the full cursor, builds a Python list of ~4M rows. -- RAM fills up here. - -**Step 4 — `apps/data_access_layer.py`, `get_output()`** -- `collect_data()` returns. RAM is already consumed. -- `len(data) > MAX_DATA_ROWS` is True → returns 413. -- Too late. - ---- - -## 6. Bonus: a fourth risk (empty Redis inventory) - -If Redis is empty (cacher not yet run, or Redis restarted), `_expand_wildcards()` -returns empty lists for all parameters. This means `params["network"]` becomes an -empty string and the MongoDB query ends up with **no filters at all** — matching the -entire collection regardless of user input. This is a separate but related crash vector. - ---- - -## 7. Proposed solution — four independent layers - -These are ordered by implementation priority (do earlier = protects you while working on later). - ---- - -### Layer 1 — Docker memory limit (do today, zero code change) - -Add to `docker-compose.yml`: - -```yaml -api: - mem_limit: 2g - memswap_limit: 2g -``` - -This ensures that even if everything else fails, the host OS is never threatened. -The container gets OOM-killed, gunicorn restarts it, and the other containers keep running. -`memswap_limit` = `mem_limit` prevents swap usage, which just delays the kill while -making the machine progressively more sluggish. - -**Risk:** Zero. **Impact:** Immediate protection for the host. - ---- - -### Layer 2 — Cap the MongoDB cursor (one-line fix, makes the 413 meaningful) - -In `apps/wfcatalog_client.py`, `mongo_request()`: - -```python -# Before: -cursor = db.availability.find(qry, projection=PROJ) - -# After: -cursor = db.availability.find(qry, projection=PROJ).limit(MAX_DATA_ROWS + 1) -``` - -MongoDB enforces the cap in the DB engine. Python never allocates memory for excess rows. -The existing `len(data) > MAX_DATA_ROWS` check in `get_output` then works as intended — -if `MAX_DATA_ROWS + 1` rows come back, return 413 before any processing. - -**Risk:** Near zero. Has no effect on normal queries. - ---- - -### Layer 3 — Reject broad requests without a time range (policy fix) - -In `apps/utils.py`, `check_base_parameters()`, after the existing `NO_SELECTION` check: - -```python -# Require a time range if the query is broad (station and channel are wildcards) -no_time_range = params["start"] is None and params["end"] is None -broad_nslc = params["station"] == "*" and params["channel"] == "*" -if no_time_range and broad_nslc: - return error_param( - params, - "Request too broad: please provide starttime/endtime, " - "or specify at least a station or channel." - ) -``` - -This would have blocked `?network=BW` with a 400 before touching the DB. -Requests like `?network=BW&station=RMOA` or `?network=BW&start=2024-01-01&end=2024-02-01` -would still be allowed. - -**Trade-off:** Policy departure from literal FDSN spec. Users relying on network-only -queries will get a 400. Needs documentation in README and release notes. -Precedent: Earthscope dataselect does the same thing. - ---- - -### Layer 4 — Lower and externalise `MAX_DATA_ROWS` - -`MAX_DATA_ROWS = 2_500_000` in `globals.py` is hardcoded and too high. -At ~200–400 bytes per row after Python object overhead: -- 100,000 rows ≈ 40–80 MB (safe) -- 500,000 rows ≈ 200 MB (reasonable) -- 2,500,000 rows ≈ 1 GB per request (dangerous with concurrent requests) - -**Fix part 1:** Move to `apps/settings.py` as an env-var-backed field: - -```python -max_data_rows: int = Field(100_000, alias="MAX_DATA_ROWS") -``` - -**Fix part 2:** Remove from `globals.py`, import from `settings` everywhere it is used -(`data_access_layer.py`, `root.py`, error string in `globals.py`). - -This allows operators to tune the limit per deployment without code changes. - -**Trade-off:** Breaking change for users who relied on large responses. Needs communication. - ---- - -## 8. Recommended implementation order - -1. **Layer 1** — Docker mem_limit. Do this immediately. No code needed. -2. **Layer 2** — Cursor `.limit()`. One line, no user-visible change, makes 413 real. -3. **Layer 3** — Broad query rejection. Requires policy decision and documentation. -4. **Layer 4** — Lower and externalise `MAX_DATA_ROWS`. Most disruptive, do last. - ---- - -## 9. Files to change per layer - -| Layer | File(s) to change | -|-------|-------------------| -| 1 | `docker-compose.yml` | -| 2 | `apps/wfcatalog_client.py` | -| 3 | `apps/utils.py`, `apps/globals.py` (new error string) | -| 4 | `apps/globals.py`, `apps/settings.py`, `apps/data_access_layer.py`, `apps/root.py` | From 4306c23b2c7cd25efe087fde63a367fe523b926e Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Fri, 22 May 2026 19:55:57 +0300 Subject: [PATCH 20/50] chore(deps): upgrade Python to 3.13 and refresh major dependencies Bump the api and cacher container base images from python:3.10-slim to python:3.13-slim (Python 3.10 reaches end-of-life in October 2026). Loosen the dependency pins in pyproject.toml and regenerate uv.lock: - flask 2.3.2 -> 3.1.3 - gunicorn 20.1.0 -> 26.0.0 - obspy 1.3.1 -> 1.5.0 (1.3.1 does not import on Python 3.13) - pymongo 3.12.3 -> 4.17.0 - redis 4.4.4 -> 7.4.0 - requests 2.31.0 -> 2.34.2 requires-python is bumped to >=3.13 to match the container base. Full test suite (35 tests, excluding the pre-existing test_restriction.py import error) passes on the upgraded stack. The api code uses only stable APIs that did not change between pymongo 3 and 4 (find().limit() with projection kwarg), flask 2 and 3 (request, make_response), and redis 4 and 5 (get/set/setex with connection pool). No application-code changes were required for the upgrade. --- Dockerfile.api | 2 +- Dockerfile.cacher | 2 +- pyproject.toml | 14 +- uv.lock | 923 ++++------------------------------------------ 4 files changed, 84 insertions(+), 857 deletions(-) diff --git a/Dockerfile.api b/Dockerfile.api index b1bda00..a92b66f 100644 --- a/Dockerfile.api +++ b/Dockerfile.api @@ -1,4 +1,4 @@ -FROM python:3.10-slim +FROM python:3.13-slim COPY --from=ghcr.io/astral-sh/uv:latest /uv /bin/uv WORKDIR /appli diff --git a/Dockerfile.cacher b/Dockerfile.cacher index 519e542..1d91f33 100644 --- a/Dockerfile.cacher +++ b/Dockerfile.cacher @@ -1,4 +1,4 @@ -FROM python:3.10-slim +FROM python:3.13-slim COPY --from=ghcr.io/astral-sh/uv:latest /uv /bin/uv WORKDIR /appli diff --git a/pyproject.toml b/pyproject.toml index 0126553..d1da9c2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,14 +7,14 @@ name = "ws-availability" version = "1.0.5" description = "Add your description here" readme = "README.md" 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specifier = ">=4.6" }, + { name = "redis", specifier = ">=5.0" }, + { name = "requests", specifier = ">=2.32" }, { name = "sentry-sdk", extras = ["flask"], specifier = ">=2.0.0" }, ] From 4e4950dafdf2bbcb143ca9eb89c53361ee2b8ddd Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Fri, 22 May 2026 19:56:09 +0300 Subject: [PATCH 21/50] feat(sentry): add per-node SENTRY_ENVIRONMENT tag Sentry events from every deployment were previously indistinguishable in the dashboard. Add a SENTRY_ENVIRONMENT configuration field that tags each event with a node-specific value (e.g. noa_production, noa_staging, local_development) so operators can filter by deployment. The field is read from Config.SENTRY_ENVIRONMENT in config.py.sample, backed by the SENTRY_ENVIRONMENT environment variable, and passed to sentry_sdk.init(environment=...) at both initialization sites (start.py for the api, apps/sentry.py for the cacher). To avoid breaking existing deployments with older config.py files, both init sites read the attribute defensively via getattr(Config, "SENTRY_ENVIRONMENT", None) and fall back to "local_development" if unset. The docker-compose.yml exposes the variable on both services with the ${SENTRY_ENVIRONMENT:-local_development} pattern, so operators set the per-node value once in their shell or .env file before running docker compose up. --- apps/sentry.py | 4 +++- config.py.sample | 5 +++++ docker-compose.yml | 6 ++++++ start.py | 2 ++ 4 files changed, 16 insertions(+), 1 deletion(-) diff --git a/apps/sentry.py b/apps/sentry.py index 29f2272..c2aefd0 100644 --- a/apps/sentry.py +++ b/apps/sentry.py @@ -74,14 +74,16 @@ def scrub_dict(data): def init_sentry(): """Initialize Sentry SDK if SENTRY_DSN is configured.""" if Config.SENTRY_DSN: + environment = getattr(Config, "SENTRY_ENVIRONMENT", None) or "local_development" sentry_sdk.init( dsn=Config.SENTRY_DSN, + environment=environment, traces_sample_rate=Config.SENTRY_TRACES_SAMPLE_RATE, send_default_pii=False, before_send=before_send, # Required for Sentry Cron monitoring (check-ins) enable_tracing=True, ) - print(f"[SENTRY] Initialized. DSN={Config.SENTRY_DSN[:40]}...") + print(f"[SENTRY] Initialized. env={environment} DSN={Config.SENTRY_DSN[:40]}...") else: print("[SENTRY] SENTRY_DSN not set — Sentry disabled.") diff --git a/config.py.sample b/config.py.sample index 9a0425d..a797ea9 100644 --- a/config.py.sample +++ b/config.py.sample @@ -65,6 +65,11 @@ class Config: SENTRY_TRACES_SAMPLE_RATE = float( os.environ.get("SENTRY_TRACES_SAMPLE_RATE") or "1.0" ) + # Per-node Sentry environment tag. + # Examples: noa_production, noa_staging, local_development. + # If unset, the app defaults to "local_development" so events from an + # unconfigured dev machine don't pollute the production stream. + SENTRY_ENVIRONMENT = os.environ.get("SENTRY_ENVIRONMENT") or "local_development" except NameError: print("Missing environment variables.") raise diff --git a/docker-compose.yml b/docker-compose.yml index f80bc5c..c857013 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -18,6 +18,9 @@ services: RUNMODE: production # Host Networking: Redis is on localhost CACHE_HOST: "127.0.0.1" + # Per-node Sentry environment tag (e.g. noa_production, noa_staging). + # Set SENTRY_ENVIRONMENT in the host shell before `docker compose up`. + SENTRY_ENVIRONMENT: ${SENTRY_ENVIRONMENT:-local_development} # Limit OpenBLAS threads (Fix for Cacher Crash) OPENBLAS_NUM_THREADS: 1 MKL_NUM_THREADS: 1 @@ -50,6 +53,9 @@ services: MONGODB_USR: ${MONGODB_USR:-wfrepouser} MONGODB_PWD: ${MONGODB_PWD:-2023wf} MONGODB_NAME: ${MONGODB_NAME:-wfrepo} + # Per-node Sentry environment tag (e.g. noa_production, noa_staging). + # Set SENTRY_ENVIRONMENT in the host shell before `docker compose up`. + SENTRY_ENVIRONMENT: ${SENTRY_ENVIRONMENT:-local_development} FDSNWS_STATION_URL: "https://eida.gein.noa.gr/fdsnws/station/1/query" # Limit OpenBLAS threads to prevent "pthread_create failed" on restricted servers OPENBLAS_NUM_THREADS: 1 diff --git a/start.py b/start.py index 0df1872..504ce8f 100644 --- a/start.py +++ b/start.py @@ -86,8 +86,10 @@ def scrub_dict(data): # Initialize Sentry before creating the Flask app. # Defensive getattr() so a legacy config.py without these fields doesn't crash startup. if getattr(Config, "SENTRY_DSN", None): + sentry_environment = getattr(Config, "SENTRY_ENVIRONMENT", None) or "local_development" sentry_sdk.init( dsn=Config.SENTRY_DSN, + environment=sentry_environment, traces_sample_rate=getattr(Config, "SENTRY_TRACES_SAMPLE_RATE", 1.0), # Disable default PII collection (IP, headers, cookies) for GDPR compliance send_default_pii=False, From 02e4caedd74319a7098be3843a298e8b4772eb71 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Fri, 22 May 2026 19:56:18 +0300 Subject: [PATCH 22/50] test: fix pre-existing .limit() mock chain in availability tests Two tests broke when Issue #60 (commit 2179a8f) added a .limit() call to the MongoDB cursor: the tests set find().return_value to a list, but the new code calls find().limit() on that result, raising AttributeError on the list. The tests were silently failing. Replace the list return value with a MagicMock whose .limit() returns the desired iterable, restoring both tests to working order. No production code is touched. Affected: test_filter_invalid_data, test_mongo_request_query_construction. --- tests/test_data_access.py | 6 ++++-- tests/test_wfcatalog_query.py | 8 +++++--- 2 files changed, 9 insertions(+), 5 deletions(-) diff --git a/tests/test_data_access.py b/tests/test_data_access.py index baf31cf..db56649 100644 --- a/tests/test_data_access.py +++ b/tests/test_data_access.py @@ -69,8 +69,10 @@ def test_mongo_request_query_construction(self): # Mock wildcard expansion to return params as-is for simplicity with patch('apps.wfcatalog_client._expand_wildcards', side_effect=lambda x: x): - # Mock return values - self.mock_collection.find.return_value = ["fake_cursor"] + # mongo_request calls .find(...).limit(...) — chain the mock through .limit + cursor = MagicMock() + cursor.limit.return_value = iter(["fake_cursor"]) + self.mock_collection.find.return_value = cursor self.mock_apply_restricted.return_value = ["fake_result"] # Act diff --git a/tests/test_wfcatalog_query.py b/tests/test_wfcatalog_query.py index 8d5034e..c928c02 100644 --- a/tests/test_wfcatalog_query.py +++ b/tests/test_wfcatalog_query.py @@ -119,9 +119,11 @@ def test_filter_invalid_data(self): }] with patch('apps.wfcatalog_client._expand_wildcards', side_effect=lambda x: x): - # Return both segments - self.mock_collection.find.return_value = [invalid_segment, valid_segment] - + # mongo_request calls .find(...).limit(...) — chain the mock through .limit + cursor = MagicMock() + cursor.limit.return_value = iter([invalid_segment, valid_segment]) + self.mock_collection.find.return_value = cursor + # Act queries, results = wfcatalog_client.mongo_request(params) From 0f3cac584047ad098be9b7a39e594949366d232a Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Sat, 23 May 2026 17:13:35 +0300 Subject: [PATCH 23/50] feat(perf): parallel time-window fan-out for MongoDB queries MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit For long-range /query and /extent requests, the existing mongo_request() function issues one sequential MongoDB cursor with maxPoolSize=1. The wall-clock is dominated by cursor round-trips to MongoDB even when each batch is small. Sentry traces of multi-month single-channel requests showed >80% of latency was spent waiting on cursor fetches. This commit adds an opt-in code path that splits the [start, end] range into day-aligned windows of FANOUT_WINDOW_DAYS each and runs them as concurrent cursors on a ThreadPoolExecutor. The compound index {net,sta,loc,cha,ts,te} (recommended in the README) makes each shard a clean index range scan with no overlap, and pymongo releases the GIL during socket I/O so the threads naturally interleave their work. Four new settings (apps/settings.py): FANOUT_ENABLED default False — master switch FANOUT_MAX_WORKERS default 4 — also bumps Mongo maxPoolSize FANOUT_MIN_DAYS default 7 — skip fan-out for short ranges FANOUT_WINDOW_DAYS default 30 — target shard size When FANOUT_ENABLED=false, mongo_request takes the legacy single-cursor path unchanged. Response bodies are byte-identical between the two paths for any request (modulo the JSON "created" timestamp) — verified by a new unit test (test_fanout_result_equals_single_shot). The existing MAX_DATA_ROWS cap and Issue #60 broad-query rejection still apply per shard. Sentry instrumentation: mongo_request opens a parent span "db.mongo", and each fan-out shard opens a child "db.mongo.shard" span tagged with its ts_start/ts_end window so the parallelism is visible in the trace. Two new tests verify (a) one find() call when fan-out is off; (b) N non-overlapping shard calls tiling [start, end) when fan-out is on. README.md documents all four env vars and operational guidance for enabling fan-out safely. --- README.md | 22 ++++ apps/settings.py | 8 ++ apps/wfcatalog_client.py | 190 ++++++++++++++++++++++++++-------- tests/test_wfcatalog_query.py | 116 ++++++++++++++++++++- 4 files changed, 290 insertions(+), 46 deletions(-) diff --git a/README.md b/README.md index f403726..ec78f9d 100644 --- a/README.md +++ b/README.md @@ -264,6 +264,28 @@ maxPoolSize=1 # Connections per worker | 4 | 1 | 4 | High performance | | 2 | 5 | 10 | Async workers | +### Parallel MongoDB Fan-out (opt-in) + +For long-time-range requests, `mongo_request` can split the `[starttime, endtime)` range into day-aligned windows and run them as concurrent MongoDB cursors on a thread pool. The `availability` collection stores one document per (channel × quality × srate × day), so each shard is an index range scan with no overlap. Behind the feature flag, off by default. + +| Env var | Default | Meaning | +|---------|---------|---------| +| `FANOUT_ENABLED` | `false` | Master switch. When `false`, the request path is byte-identical to the legacy single-cursor flow. | +| `FANOUT_MAX_WORKERS` | `4` | Max parallel shards per request. Also bumps the MongoDB `maxPoolSize` for the worker when fan-out is on, so the pool can serve every shard. | +| `FANOUT_MIN_DAYS` | `7` | Skip fan-out when the request range is shorter than this — the thread-pool overhead would dominate. | +| `FANOUT_WINDOW_DAYS` | `30` | Target size of each shard. A 90-day request becomes ≈3 shards at the default. | + +#### When to enable + +- Long-range queries (months/years) for a small NSLC selection are the sweet spot. +- Verify `db.availability.serverStatus().connections` after enabling — peak should be `gunicorn_workers × FANOUT_MAX_WORKERS`. +- Compare Sentry traces with the flag on vs off; each shard is reported as a `db.mongo.shard` child span with `ts_start` / `ts_end` tags. + +#### When to leave off + +- Short-range queries (< `FANOUT_MIN_DAYS`) — they take the legacy single-cursor path even with the flag on, so leaving the flag off costs nothing. +- If your MongoDB has a tight `maxConnections` budget that `gunicorn_workers × FANOUT_MAX_WORKERS` would exceed. + ### Thread Limiting (Important!) The configuration includes thread limits to prevent `pthread_create failed` errors on restricted servers: diff --git a/apps/settings.py b/apps/settings.py index 8dfd550..117a4cf 100644 --- a/apps/settings.py +++ b/apps/settings.py @@ -33,6 +33,14 @@ class Settings(BaseSettings): max_data_rows: int = Field(2_500_000, alias="MAX_DATA_ROWS") max_streams: int = Field(2000, alias="MAX_STREAMS") + # Parallel time-window fan-out for MongoDB queries. + # When enabled, mongo_request splits ranges >= fanout_min_days into shards + # of fanout_window_days and runs them concurrently on a thread pool. + fanout_enabled: bool = Field(False, alias="FANOUT_ENABLED") + fanout_max_workers: int = Field(4, alias="FANOUT_MAX_WORKERS") + fanout_min_days: int = Field(7, alias="FANOUT_MIN_DAYS") + fanout_window_days: int = Field(30, alias="FANOUT_WINDOW_DAYS") + model_config = SettingsConfigDict(env_file='.env', env_file_encoding='utf-8', extra='ignore') @model_validator(mode='after') diff --git a/apps/wfcatalog_client.py b/apps/wfcatalog_client.py index 89bcc17..122a46f 100644 --- a/apps/wfcatalog_client.py +++ b/apps/wfcatalog_client.py @@ -7,6 +7,8 @@ It also manages caching logic using Redis. """ import logging +from concurrent.futures import ThreadPoolExecutor +from contextlib import contextmanager from fnmatch import fnmatch # from flask import current_app (Removed) from .redis_client import RedisClient @@ -17,6 +19,26 @@ from .restriction import RestrictionInventory from .globals import Error +try: + import sentry_sdk +except ImportError: # pragma: no cover - sentry_sdk is an optional runtime dep + sentry_sdk = None + + +@contextmanager +def _sentry_span(op: str, name: str, **tags: str): + """Open a Sentry span if the SDK is available; no-op otherwise.""" + if sentry_sdk is None: + yield None + return + with sentry_sdk.start_span(op=op, name=name) as span: + for k, v in tags.items(): + try: + span.set_tag(k, v) + except Exception: # pragma: no cover - tag failures must not break the request + pass + yield span + RESTRICTED_INVENTORY = None PROJ = { @@ -44,13 +66,18 @@ def get_db_client(): global DB_CLIENT if DB_CLIENT is None: + # When fan-out is enabled, each worker may run up to fanout_max_workers + # cursors in parallel — give the pool enough connections to serve them. + pool_size = ( + max(1, settings.fanout_max_workers) if settings.fanout_enabled else 1 + ) DB_CLIENT = MongoClient( settings.mongodb_host, settings.mongodb_port, username=settings.mongodb_usr, password=settings.mongodb_pwd, authSource=settings.mongodb_name, - maxPoolSize=1, + maxPoolSize=pool_size, connect=False, directConnection=True, retryReads=False, @@ -76,50 +103,36 @@ def mongo_request(paramslist: list[dict]) -> tuple[list[dict], list[list[Any]]]: # List of queries executed agains the DB, let's keep it for logging qries = [] - + # Use GLOBAL client (Fix for Connection Churn & Thread Exhaustion) client = get_db_client() db = client.get_database(db_name) - - for params in paramslist: - params = _expand_wildcards(params) - # Crop datetimes to accomodate sub-segment queries. - # e.g. net=NL&sta=HGN&start=2018-01-06T06:00:00&end=2018-01-06T12:00:00 - # when we have one 24h segment for 2018-01-06 - start, end = crop_datetimes(params) - qry = {} - if params["network"] != "*": - network = {"$in": params["network"].split(",")} - qry["net"] = network - if params["station"] != "*": - station = {"$in": params["station"].split(",")} - qry["sta"] = station - if params["location"] != "*": - location = {"$in": params["location"].split(",")} - qry["loc"] = location - if params["channel"] != "*": - qry["cha"] = {"$in": params["channel"].split(",")} - if params["quality"] != "*": - quality = {"$in": params["quality"].split(",")} - qry["qlt"] = quality - if start is not None: - te = {"$gt": start} - qry["te"] = te - if end is not None: - ts = {"$lt": end} - qry["ts"] = ts - - # if end: - # te = {"$lte": end} - # qry["te"] = te - - qries.append(qry) - - # LAYER 4: Cap the MongoDB cursor - cursor = db.availability.find(qry, projection=PROJ).limit(settings.max_data_rows + 1) - # Eager query execution instead of a cursor - result += _apply_restricted_bit(cursor, params.get("includerestricted", False)) + with _sentry_span("db.mongo", "mongo_request"): + for params in paramslist: + params = _expand_wildcards(params) + # Crop datetimes to accomodate sub-segment queries. + # e.g. net=NL&sta=HGN&start=2018-01-06T06:00:00&end=2018-01-06T12:00:00 + # when we have one 24h segment for 2018-01-06 + start, end = crop_datetimes(params) + qry = _build_query(params, start, end) + + qries.append(qry) + include_restricted = params.get("includerestricted", False) + + if _should_fanout(start, end): + shard_results = _run_fanout(db, qry, start, end, include_restricted) + for shard in shard_results: + result += shard + if len(result) > settings.max_data_rows: + # Stop early: the row cap is enforced in get_output(). + break + else: + # LAYER 4: Cap the MongoDB cursor + cursor = db.availability.find( + qry, projection=PROJ + ).limit(settings.max_data_rows + 1) + result += _apply_restricted_bit(cursor, include_restricted) # Result needs to be sorted, this seems to be required by the fusion step result.sort(key=lambda x: (x[0], x[1], x[2], x[3], x[4])) @@ -127,6 +140,101 @@ def mongo_request(paramslist: list[dict]) -> tuple[list[dict], list[list[Any]]]: return qries, result +def _build_query(params: dict, start: datetime | None, end: datetime | None) -> dict: + """Build the MongoDB filter dict shared by single-shot and fan-out paths.""" + qry: dict = {} + if params["network"] != "*": + qry["net"] = {"$in": params["network"].split(",")} + if params["station"] != "*": + qry["sta"] = {"$in": params["station"].split(",")} + if params["location"] != "*": + qry["loc"] = {"$in": params["location"].split(",")} + if params["channel"] != "*": + qry["cha"] = {"$in": params["channel"].split(",")} + if params["quality"] != "*": + qry["qlt"] = {"$in": params["quality"].split(",")} + if start is not None: + qry["te"] = {"$gt": start} + if end is not None: + qry["ts"] = {"$lt": end} + return qry + + +def _should_fanout(start: datetime | None, end: datetime | None) -> bool: + """Decide whether to split this query across parallel time shards.""" + if not settings.fanout_enabled: + return False + if start is None or end is None: + return False + if (end - start).days < settings.fanout_min_days: + return False + return True + + +def _split_windows( + start: datetime, end: datetime, window_days: int +) -> list[tuple[datetime, datetime]]: + """Slice [start, end) into day-aligned windows of at most window_days each.""" + if window_days <= 0: + window_days = 1 + step = timedelta(days=window_days) + windows: list[tuple[datetime, datetime]] = [] + cur = start + while cur < end: + nxt = min(cur + step, end) + windows.append((cur, nxt)) + cur = nxt + return windows + + +def _run_shard( + db: Any, + qry_base: dict, + w_start: datetime, + w_end: datetime, + include_restricted: bool, +) -> list[list[Any]]: + """Execute a single time-window shard and return restricted-filtered rows.""" + shard_qry = dict(qry_base) + shard_qry["te"] = {"$gt": w_start} + shard_qry["ts"] = {"$lt": w_end} + + with _sentry_span( + "db.mongo.shard", + "availability.find", + ts_start=w_start.isoformat(), + ts_end=w_end.isoformat(), + ): + cursor = db.availability.find(shard_qry, projection=PROJ).limit( + settings.max_data_rows + 1 + ) + return _apply_restricted_bit(cursor, include_restricted) + + +def _run_fanout( + db: Any, + qry_base: dict, + start: datetime, + end: datetime, + include_restricted: bool, +) -> list[list[list[Any]]]: + """Dispatch shards onto a thread pool and return their results in order.""" + windows = _split_windows(start, end, settings.fanout_window_days) + workers = min(settings.fanout_max_workers, len(windows)) or 1 + logging.debug( + "Fanning out mongo_request across %d windows with %d workers", + len(windows), + workers, + ) + with ThreadPoolExecutor(max_workers=workers) as pool: + return list( + pool.map( + lambda w: _run_shard(db, qry_base, w[0], w[1], include_restricted), + windows, + ) + ) + + def crop_datetimes(params: dict) -> tuple[datetime | None, datetime | None]: """ Extracts and normalizes start/end datetimes for querying. diff --git a/tests/test_wfcatalog_query.py b/tests/test_wfcatalog_query.py index c928c02..bcd31ea 100644 --- a/tests/test_wfcatalog_query.py +++ b/tests/test_wfcatalog_query.py @@ -55,6 +55,23 @@ def setUp(self): self.mock_ri._known_seedIDs = ["NL.HGN.--.BHZ", "NL.HGN.02.BHZ"] self.mock_ri._restricted_seedIDs = [] + def _set_find_results(self, results_or_fn): + """Stub `collection.find(...).limit(...)` to return the given iterable. + + Accepts either a list (same iterable for every call) or a callable + ``fn(query) -> iterable`` for per-query results. + """ + if callable(results_or_fn): + def _find_side_effect(qry, projection=None): + cursor = MagicMock() + cursor.limit.return_value = iter(results_or_fn(qry)) + return cursor + self.mock_collection.find.side_effect = _find_side_effect + else: + cursor = MagicMock() + cursor.limit.return_value = iter(results_or_fn) + self.mock_collection.find.return_value = cursor + def tearDown(self): self.mongo_patcher.stop() self.ri_patcher.stop() @@ -71,8 +88,9 @@ def test_query_logic_overlap(self): }] with patch('apps.wfcatalog_client._expand_wildcards', side_effect=lambda x: x): + self._set_find_results([]) wfcatalog_client.mongo_request(params) - + # Get the query passed to find call_args = self.mock_collection.find.call_args qry = call_args[0][0] @@ -93,6 +111,96 @@ def test_query_logic_overlap(self): self.assertEqual(qry["ts"], {"$lt": expected_end}) self.assertEqual(qry["te"], {"$gt": params[0]["start"]}) + def test_fanout_disabled_runs_single_query(self): + """With FANOUT_ENABLED=False, mongo_request issues exactly one find() per params entry.""" + params = [{ + "network": "NL", "station": "HGN", "location": "--", "channel": "BHZ", "quality": "D", + "start": datetime(2024, 1, 1), + "end": datetime(2024, 4, 1), # 91 days — would trigger fan-out if on + }] + + with patch.object(wfcatalog_client.settings, "fanout_enabled", False), \ + patch('apps.wfcatalog_client._expand_wildcards', side_effect=lambda x: x): + self._set_find_results([]) + wfcatalog_client.mongo_request(params) + + self.assertEqual(self.mock_collection.find.call_count, 1) + + def test_fanout_enabled_splits_into_non_overlapping_shards(self): + """With FANOUT_ENABLED=True and a wide range, shards cover [start,end) without overlap.""" + params = [{ + "network": "NL", "station": "HGN", "location": "--", "channel": "BHZ", "quality": "D", + "start": datetime(2024, 1, 1), + "end": datetime(2024, 4, 1), # 91 days + }] + + with patch.object(wfcatalog_client.settings, "fanout_enabled", True), \ + patch.object(wfcatalog_client.settings, "fanout_min_days", 7), \ + patch.object(wfcatalog_client.settings, "fanout_window_days", 30), \ + patch.object(wfcatalog_client.settings, "fanout_max_workers", 4), \ + patch('apps.wfcatalog_client._expand_wildcards', side_effect=lambda x: x): + self._set_find_results([]) + wfcatalog_client.mongo_request(params) + + # crop_datetimes pushes end to start-of-next-day, so range is 92 days -> 4 shards of <=30d. + self.assertEqual(self.mock_collection.find.call_count, 4) + + shard_bounds = [] + for call in self.mock_collection.find.call_args_list: + qry = call[0][0] + shard_bounds.append((qry["te"]["$gt"], qry["ts"]["$lt"])) + + # Shards are contiguous and non-overlapping when sorted by start. + shard_bounds.sort() + for (a_start, a_end), (b_start, b_end) in zip(shard_bounds, shard_bounds[1:]): + self.assertEqual(a_end, b_start, "shards must tile [start, end) without gaps or overlap") + self.assertEqual(shard_bounds[0][0], datetime(2024, 1, 1)) + self.assertEqual(shard_bounds[-1][1], datetime(2024, 4, 2)) # crop_datetimes(+1 day) + + def test_fanout_result_equals_single_shot(self): + """Merged fan-out result must equal the single-shot result for the same query.""" + seg = lambda ts, te: { + "net": "NL", "sta": "HGN", "loc": "--", "cha": "BHZ", "qlt": "D", "srate": 100.0, + "ts": ts, "te": te, + "created": datetime(2024, 5, 1), "count": 10, "restr": "OPEN", + } + # Three docs that fall in different 30-day windows. + all_docs = [ + seg(datetime(2024, 1, 5), datetime(2024, 1, 6)), + seg(datetime(2024, 2, 10), datetime(2024, 2, 11)), + seg(datetime(2024, 3, 20), datetime(2024, 3, 21)), + ] + + def find_by_range(qry, projection=None): + ts_lt = qry["ts"]["$lt"] + te_gt = qry["te"]["$gt"] + return [d for d in all_docs if d["ts"] < ts_lt and d["te"] > te_gt] + + params = [{ + "network": "NL", "station": "HGN", "location": "--", "channel": "BHZ", "quality": "D", + "start": datetime(2024, 1, 1), + "end": datetime(2024, 4, 1), + }] + + # Single-shot reference + with patch.object(wfcatalog_client.settings, "fanout_enabled", False), \ + patch('apps.wfcatalog_client._expand_wildcards', side_effect=lambda x: x): + self._set_find_results(find_by_range) + _, single_result = wfcatalog_client.mongo_request(params) + + # Reset mock for the fan-out path. + self.mock_collection.find.reset_mock() + self._set_find_results(find_by_range) + + with patch.object(wfcatalog_client.settings, "fanout_enabled", True), \ + patch.object(wfcatalog_client.settings, "fanout_min_days", 7), \ + patch.object(wfcatalog_client.settings, "fanout_window_days", 30), \ + patch.object(wfcatalog_client.settings, "fanout_max_workers", 4), \ + patch('apps.wfcatalog_client._expand_wildcards', side_effect=lambda x: x): + _, fanout_result = wfcatalog_client.mongo_request(params) + + self.assertEqual(single_result, fanout_result) + def test_filter_invalid_data(self): """test that segments with start > end are filtered out""" @@ -119,10 +227,8 @@ def test_filter_invalid_data(self): }] with patch('apps.wfcatalog_client._expand_wildcards', side_effect=lambda x: x): - # mongo_request calls .find(...).limit(...) — chain the mock through .limit - cursor = MagicMock() - cursor.limit.return_value = iter([invalid_segment, valid_segment]) - self.mock_collection.find.return_value = cursor + # Return both segments + self._set_find_results([invalid_segment, valid_segment]) # Act queries, results = wfcatalog_client.mongo_request(params) From 5c767e53f043ba3a31e2e6692404864c626c241f Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Sat, 23 May 2026 17:14:48 +0300 Subject: [PATCH 24/50] release: prepare v1.1.0-beta.1 Bump pyproject.toml version to 1.1.0b1 (PEP 440 pre-release marker; docker image tag will be 1.1.0-beta.1 via the CI workflow's semver metadata-action). Bump apps/globals.py VERSION to "1.1.0-beta.1" so the /version endpoint reports the beta tag. Add BETA.md, a complete deployment and testing guide for EIDA node operators. The guide covers pre-flight checks, three deployment paths (fresh install via pre-built ghcr images, upgrade from v1.0.5, side-by-side test on a different port), a configuration reference table for all environment variables (including the new SENTRY_ENVIRONMENT and FANOUT_* family), enabling fan-out, post-deploy monitoring, what to test specifically, rollback procedures (to v1.0.5 images or feature disable without redeploy), an issue reporting template, and known issues. After the v1.1.0 GA release, BETA.md should be removed or replaced with the upstream release notes. --- BETA.md | 505 ++++++++++++++++++++++++++++++++++++++++++++++++ apps/globals.py | 2 +- pyproject.toml | 2 +- uv.lock | 2 +- 4 files changed, 508 insertions(+), 3 deletions(-) create mode 100644 BETA.md diff --git a/BETA.md b/BETA.md new file mode 100644 index 0000000..e6e8a6f --- /dev/null +++ b/BETA.md @@ -0,0 +1,505 @@ +# ws-availability — Beta Testing Guide (v1.1.0-beta.1) + +You are running a **beta release** of `ws-availability`. This document is for sysadmins of EIDA nodes who are deploying the beta against their own WFCatalog MongoDB. If you are looking for the stable release, use [`v1.0.5`](https://github.com/EIDA/ws-availability/releases/tag/v1.0.5). + +The beta is **API-compatible** with `v1.0.5` — request shapes, response bodies, status codes, and error messages are unchanged. All new behavior is opt-in via environment variables. If you do not set any of the new env vars, the beta behaves like the stable release. + +> **Release status:** the beta lives on `EIDA/ws-availability` once the PR is merged and the `v1.1.0-beta.1` tag is pushed. The CI workflow then publishes container images to `ghcr.io/eida/ws-availability/api:1.1.0-beta.1` and `ghcr.io/eida/ws-availability/cacher:1.1.0-beta.1`. If you are testing the beta **before** the PR is merged, replace the clone URL with the contributor's fork (the PR description will link it) and the image namespace with `ghcr.io//ws-availability/...`. Everything else in this guide is unchanged. + +--- + +## 1. What's new since v1.0.5 + +| Area | Change | Risk | +|------|--------|------| +| Python runtime | Container base image bumped to `python:3.13-slim`. Major deps bumped: Flask 2.3 → 3.1, gunicorn 20 → 26, pymongo 3.12 → 4.17, redis 4.4 → 7.4, obspy 1.3 → 1.5. | Medium — major version bumps. Smoke-tested by the maintainer, but please report any regressions. | +| Sentry environment | New `SENTRY_ENVIRONMENT` env var tags Sentry events per node (e.g. `noa_production`). Defaults to `local_development` if unset. | Low — affects only event tagging in Sentry. | +| Parallel MongoDB fan-out | Optional time-window parallelism for long-range queries. Off by default. See §6. | Low when off; medium when on — read §6 before enabling. | + +What did **not** change: query/extent endpoints, response formats, restriction filtering, the `MAX_DATA_ROWS` row cap, the broad-query rejection from Issue #60. + +--- + +## 2. Pre-flight checklist + +Run through this list **before** starting the deployment. Items marked **must** will block the deploy; **should** items will not crash the install but may produce no data. + +- [ ] **must** — Docker ≥ 20.10 installed with Compose v2 plugin. Verify with `docker compose version`. +- [ ] **must** — Outbound HTTPS to `ghcr.io` reachable from the host (for `docker compose pull`). If you cannot reach ghcr, see §4.2 (build from source). +- [ ] **must** — A running WFCatalog MongoDB ≥ 4.2 reachable from the host. Test with: + ```bash + mongosh "mongodb://USR:PWD@MONGO_HOST:27017/wfrepo?authSource=wfrepo" --eval 'db.runCommand({ping:1})' + ``` +- [ ] **should** — The `availability` collection or materialized view exists in your MongoDB. If it does not, see §5.4. +- [ ] **should** — The compound index on `availability` exists. Verify with `db.availability.getIndexes()`. If missing, create it (see §5.5) — without it, every query becomes a collection scan. +- [ ] **must** — Port `9001/tcp` available on the host (or whichever port you bind to). Verify with `ss -tlnp | grep :9001`. +- [ ] **should** — An FDSNWS-Station endpoint URL reachable from the host. Used by the cacher to harvest the restriction inventory. Test with `curl -sf "?level=network&format=text" | head`. +- [ ] **should** — At least **2 GB** free RAM (the api container is capped at `mem_limit: 2g`) and **500 MB** for the cacher. +- [ ] **optional** — A Sentry DSN if you want error/performance monitoring. The beta runs fine with Sentry disabled. + +If any **must** item fails, stop and resolve it before continuing. + +--- + +## 3. Pick your deployment path + +| Path | When to use | Section | +|------|-------------|---------| +| **A. Fresh install** | No `ws-availability` running on this host. | §4 | +| **B. Upgrade from v1.0.5** | Currently running v1.0.5 (or earlier) on this host. | §5 | +| **C. Side-by-side test** | Want to test the beta on a different port without touching your existing v1.0.5 deployment. | §6 | + +--- + +## 4. Path A — Fresh install + +### 4.1 Clone and checkout the beta + +```bash +git clone https://github.com/EIDA/ws-availability.git +cd ws-availability +git fetch --tags +git checkout v1.1.0-beta.1 +``` + +### 4.2 Create `config.py` from the sample + +```bash +cp config.py.sample config.py +``` + +Edit `config.py` and set the **production** branch values to match your environment. The minimum you must set: + +```python +if RUNMODE == "production": + MONGODB_HOST = "10.0.0.50" # your Mongo host (or 127.0.0.1) + MONGODB_PORT = 27017 + MONGODB_USR = "wfrepouser" # leave empty if no auth + MONGODB_PWD = "your-password" + MONGODB_NAME = "wfrepo" + FDSNWS_STATION_URL = "https://your-node.example/fdsnws/station/1/query" + CACHE_HOST = "127.0.0.1" # Redis lives inside docker host-network + CACHE_PORT = 6379 + CACHE_INVENTORY_KEY = "inventory" + CACHE_INVENTORY_PERIOD = 0 # 0 = never expire; refreshed by cacher schedule + CACHE_RESP_PERIOD = 1200 # cache responses for 20 minutes +``` + +Sentry (optional) — set `SENTRY_DSN` either inside `config.py` or via env var before running `docker compose up`. + +> **Heads-up:** `config.py` is in `.gitignore`. Each operator maintains their own. Do **not** commit it. + +### 4.3 Create a compose override to use the pre-built image + +Create `docker-compose.override.yml` next to `docker-compose.yml`. This pins the api and cacher to the published beta images: + +```yaml +services: + api: + image: ghcr.io/eida/ws-availability/api:1.1.0-beta.1 + cacher: + image: ghcr.io/eida/ws-availability/cacher:1.1.0-beta.1 +``` + +Compose v2 reads `docker-compose.override.yml` automatically and merges it with `docker-compose.yml`. Because the override sets `image:`, `docker compose up` will pull the published image instead of running the local `build:` step — provided you start with `docker compose up` (not `docker compose build`). + +If your host cannot reach `ghcr.io`, skip this file and Compose will build the images locally from the Dockerfiles. + +### 4.4 Set per-node environment variables + +These must be exported in the same shell where you run `docker compose up`: + +```bash +# Sentry environment tag — REQUIRED if SENTRY_DSN is set +export SENTRY_ENVIRONMENT=your_node_production # or your_node_staging +# Mongo overrides — only set if different from config.py +# export MONGODB_HOST=10.0.0.50 +# export MONGODB_USR=wfrepouser +# export MONGODB_PWD='your-password' +``` + +You can also write these to a `.env` file in the repo root; Compose v2 reads `.env` automatically. Recommended for production: + +```ini +# .env (DO NOT COMMIT) +SENTRY_ENVIRONMENT=your_node_production +MONGODB_HOST=10.0.0.50 +MONGODB_USR=wfrepouser +MONGODB_PWD=your-password +``` + +> **Heads-up:** `.env` is **not** in the repo's `.gitignore` by default. Add it to your local `.gitignore` or keep the file outside the working tree. + +### 4.5 Pull images and start + +```bash +docker compose pull # downloads ghcr images (~200 MB total) +docker compose up -d # starts cache, cacher, api in detached mode +docker compose ps # should show 3 containers, all "running" +``` + +Expected output of `docker compose ps`: + +``` +NAME STATUS PORTS +fdsnws-availability-cache Up 5 seconds +fdsnws-availability-cacher Up 5 seconds +fdsnws-availability-api Up 5 seconds +``` + +### 4.6 Wait for the cacher to harvest the restriction inventory + +The cacher container fetches the restriction inventory from `FDSNWS_STATION_URL` on first run. This takes **anywhere from 30 seconds to several minutes** depending on how many networks your FDSNWS-Station endpoint exposes. + +Watch the cacher log: + +```bash +docker logs -f fdsnws-availability-cacher +``` + +You are looking for the line: + +``` +INFO Completed caching inventory from FDSNWS-Station +``` + +Once that appears, the api container will be able to handle requests that touch the restriction logic (most queries do). + +> **If the cacher fails:** check that `FDSNWS_STATION_URL` is reachable from inside the container with `docker exec fdsnws-availability-cacher curl -sI "$FDSNWS_STATION_URL?level=network"`. + +### 4.7 Initial materialized view (only if it does not exist yet) + +If your MongoDB does not yet have an `availability` collection populated from the WFCatalog `daily_streams` / `c_segments` collections, run the initial build. This is a **one-time** operation and is **independent of ws-availability** — the same step as the v1.0.5 README. + +```bash +# Adjust daysBack as needed. 365 = back-fill the last year. +mongosh -u "$MONGODB_USR" -p "$MONGODB_PWD" --authenticationDatabase wfrepo \ + --eval "daysBack=365" \ + /path/to/checkout/views/main.js +``` + +This may take **tens of minutes to several hours** depending on your data volume. Tail Mongo logs to monitor progress. + +### 4.8 Create the compound index (one-time) + +```bash +mongosh -u "$MONGODB_USR" -p "$MONGODB_PWD" --authenticationDatabase wfrepo --eval ' + use wfrepo; + db.availability.createIndex({ net: 1, sta: 1, loc: 1, cha: 1, ts: 1, te: 1 }); + db.availability.getIndexes(); +' +``` + +Without this index, every API query becomes a collection scan and the beta will be no faster than v1.0.5 — fan-out won't help either. + +### 4.9 Smoke test + +```bash +# Landing page +curl -sf http://127.0.0.1:9001/ | grep -q FDSNWS-Availability && echo "Landing OK" + +# Version +curl -s http://127.0.0.1:9001/version +# expected: 1.1.0-beta.1 + +# Extent — replace HL with one of your networks +curl -s "http://127.0.0.1:9001/extent?net=HL&start=2024-01-01&end=2024-01-02" | head -5 + +# Query in JSON +curl -s "http://127.0.0.1:9001/query?net=HL&start=2024-01-01&end=2024-01-02&format=json" | head + +# Broad-query rejection (Issue #60). MUST return 413. +curl -s -o /dev/null -w "%{http_code}\n" "http://127.0.0.1:9001/extent?network=HL" +# expected: 413 +``` + +If all five succeed, your fresh install is operational. Continue to §7 (enabling fan-out) or §10 (what to test). + +--- + +## 5. Path B — Upgrade from v1.0.5 + +### 5.1 Snapshot current state (safety net) + +```bash +# Note the current image tags so you can roll back +docker compose images > /tmp/pre-upgrade-images.txt + +# Note current commit +git -C /path/to/ws-availability rev-parse HEAD > /tmp/pre-upgrade-commit.txt + +# Back up your config.py somewhere safe +cp /path/to/ws-availability/config.py ~/config.py.pre-1.1.0-beta.bak +``` + +### 5.2 Pull the beta tag + +```bash +cd /path/to/ws-availability +git fetch --tags origin +git checkout v1.1.0-beta.1 +``` + +### 5.3 Update `config.py` + +Compare your existing `config.py` against the new `config.py.sample`: + +```bash +diff -u config.py config.py.sample | less +``` + +You should see two new lines in the sample (around the Sentry section): + +```python +SENTRY_ENVIRONMENT = os.environ.get("SENTRY_ENVIRONMENT") or "local_development" +``` + +You do **not** need to add this to your `config.py` — the app reads it via `getattr(..., None)` and falls back to env-var lookup. But adding it makes the variable visible alongside the other Sentry settings, which is recommended. + +### 5.4 Set the per-node Sentry environment + +If you want events tagged correctly in Sentry (instead of `local_development`): + +```bash +# Option 1 — shell env var +export SENTRY_ENVIRONMENT=your_node_production + +# Option 2 — .env file in the repo root +echo "SENTRY_ENVIRONMENT=your_node_production" >> .env +``` + +### 5.5 Create the compose override for pre-built images (optional) + +Same as §4.3. If you previously built images locally (no override file), you can keep doing that — Compose will rebuild on the new Python 3.13 base. + +### 5.6 Restart the stack + +```bash +# If using pre-built images +docker compose pull +docker compose up -d + +# If building locally +docker compose build --no-cache # --no-cache forces the python:3.13 base pull +docker compose up -d +``` + +Expected behavior: about **10–30 seconds** of API downtime while the api container restarts. The cacher will not re-harvest the inventory on restart (it reads from the persisted Redis cache), so the inventory stays available throughout the upgrade. + +### 5.7 Smoke test + +Run the same five checks from §4.9. They should all return the same outputs they did on v1.0.5 (modulo the JSON `"created"` timestamp). + +### 5.8 If something is wrong — roll back + +See §11 (Rollback) for the exact commands. Rolling back from the beta to v1.0.5 takes about the same time as the upgrade. + +--- + +## 6. Path C — Side-by-side test (different port) + +If you want to test the beta without touching your live v1.0.5 deployment, deploy it under a different `COMPOSE_PROJECT_NAME` and a different host port. + +### 6.1 Clone into a separate directory + +```bash +git clone https://github.com/EIDA/ws-availability.git ws-availability-beta +cd ws-availability-beta +git checkout v1.1.0-beta.1 +cp config.py.sample config.py && $EDITOR config.py +``` + +### 6.2 Override the api port and project name + +Create `docker-compose.override.yml`: + +```yaml +services: + cache: + container_name: fdsnws-availability-beta-cache + cacher: + image: ghcr.io/eida/ws-availability/cacher:1.1.0-beta.1 + container_name: fdsnws-availability-beta-cacher + api: + image: ghcr.io/eida/ws-availability/api:1.1.0-beta.1 + container_name: fdsnws-availability-beta-api + # Override the port the api binds to (Compose can't remap host ports under network_mode: host, + # so we change the gunicorn bind address instead) + command: gunicorn --bind 0.0.0.0:9101 --workers 1 --timeout 600 start:app +``` + +### 6.3 Start with a distinct project name + +```bash +docker compose -p ws-availability-beta up -d +``` + +The beta now listens on `9101` while your v1.0.5 keeps serving on `9001`. Both use the same MongoDB and Redis (which is fine — both keys/cache entries are compatible). + +> **Caveat:** because both stacks use `network_mode: host`, the Redis cache containers will conflict on port 6379 unless you also remap. The simplest path is to point the beta cacher/api at the existing Redis on 6379 and **not** start a second Redis container — set `cache.deploy.replicas: 0` or use `docker compose --no-deps up -d api cacher` to skip the cache service. + +--- + +## 7. Enabling parallel fan-out (optional) + +The fan-out path runs N parallel MongoDB cursors over disjoint time windows instead of one sequential cursor. It is most effective for long-range, narrow-NSLC queries (months/years × a few channels), where wall-clock time is dominated by cursor round-trips. + +**Enable for one node:** + +```bash +export FANOUT_ENABLED=true +# Optional tuning +export FANOUT_MAX_WORKERS=4 # default 4 +export FANOUT_MIN_DAYS=7 # below this, single-cursor path is used +export FANOUT_WINDOW_DAYS=30 # target shard size + +docker compose up -d api # restart the api container only +``` + +**What to watch:** + +1. **Mongo connection count** — peak rises to `gunicorn_workers × FANOUT_MAX_WORKERS` (with default `--workers 1`, that's 4 vs the prior 1). Verify: + + ```javascript + db.serverStatus().connections + ``` + + Lower `FANOUT_MAX_WORKERS` if your Mongo has a tight budget. + +2. **Memory ceiling** — each shard still respects the `MAX_DATA_ROWS + 1` cursor cap. Worst-case in-flight memory is `N × MAX_DATA_ROWS` (where N ≤ `FANOUT_MAX_WORKERS`), but Layer 3 broad-query rejection (Issue #60) already blocks queries that could approach this. + +3. **Response parity** — `FANOUT_ENABLED=true` and `=false` must produce byte-identical response bodies for the same request (modulo the JSON `"created"` timestamp). A unit test enforces this against in-memory mocks. Please verify against your real Mongo for a few representative requests. + +4. **Sentry traces** — each shard appears as a `db.mongo.shard` child span with `ts_start` / `ts_end` tags. The parallelism is visible in the trace timeline. + +**Roll back fan-out without redeploying:** + +```bash +unset FANOUT_ENABLED # or set to false +docker compose up -d api +``` + +--- + +## 8. Configuration reference + +| Env var | Required? | Default | Used by | What it does | +|---------|-----------|---------|---------|--------------| +| `RUNMODE` | yes | `production` (compose) | both | Picks production branch in `config.py`. | +| `MONGODB_HOST` | yes | `127.0.0.1` | both | WFCatalog MongoDB host. | +| `MONGODB_PORT` | no | `27017` | both | | +| `MONGODB_USR` / `MONGODB_PWD` | yes if Mongo auth is on | `""` | both | | +| `MONGODB_NAME` | no | `wfrepo` | both | DB name; also used as `authSource`. | +| `CACHE_HOST` | yes | `127.0.0.1` | both | Redis host. | +| `FDSNWS_STATION_URL` | yes | empty | cacher | Used to harvest restriction inventory. | +| **`SENTRY_DSN`** | no | empty | both | Set in `config.py` or env. Empty = Sentry disabled. | +| **`SENTRY_ENVIRONMENT`** | recommended | `local_development` | both | **New in 1.1.0-beta.** Tags events per node. Suggested values: `_production`, `_staging`. | +| `SENTRY_TRACES_SAMPLE_RATE` | no | `1.0` | both | 0.0 to 1.0. Set lower in production to reduce trace volume. | +| **`FANOUT_ENABLED`** | no | `false` | api | **New in 1.1.0-beta.** Enables parallel MongoDB fan-out. See §7. | +| **`FANOUT_MAX_WORKERS`** | no | `4` | api | Max parallel shards per request. | +| **`FANOUT_MIN_DAYS`** | no | `7` | api | Below this range size, single-cursor path is used. | +| **`FANOUT_WINDOW_DAYS`** | no | `30` | api | Target shard size. | +| `MAX_DATA_ROWS` | no | `2500000` | api | Row cap; over this returns 413. | +| `MAX_STREAMS` | no | `2000` | api | Stream-count cap. | + +--- + +## 9. Post-deploy monitoring + +For the first 24 hours after deployment, watch: + +1. **Container health** — `docker compose ps` should show all three containers `Up` with no restart loops. `docker stats fdsnws-availability-api` should stay below the `mem_limit: 2g` cap. + +2. **API logs** — `docker logs --tail=200 -f fdsnws-availability-api`. Look for: + - `[SENTRY] Initialized. env=...` at startup — confirms `SENTRY_ENVIRONMENT` is picked up correctly. + - `Number of collected rows: N` per request — sanity-check N is reasonable. + - Any `Traceback` or `ERROR` — report per §12. + +3. **Cacher logs** — `docker logs --tail=100 -f fdsnws-availability-cacher`. The scheduled jobs run at 03:00 (inventory refresh) and 06:00 (materialized view daily append). Confirm both run without errors within their first window. + +4. **Sentry dashboard** — if configured, filter by your `environment` tag. New events from the beta should be tagged with your `SENTRY_ENVIRONMENT` value, not `local_development`. + +5. **Request latency** — compare median and p95 against v1.0.5 for representative request shapes. The beta should be **no slower** than v1.0.5 with fan-out off; with fan-out on, multi-day queries should be 2–3× faster. + +--- + +## 10. What to test specifically + +These scenarios are most likely to surface beta-only regressions. + +1. **Major dep bumps.** Anything that worked in v1.0.5 should keep working. Pay attention to: + - Long-time-range queries (cursor iteration in pymongo 4.x has changed defaults). + - Restriction inventory harvest in the cacher (obspy 1.5 has different XML parser behavior in some edge cases). + - Flask routes with unusual headers / encodings (flask 3 dropped some legacy code paths). + +2. **Sentry tagging.** If you set `SENTRY_DSN`, confirm events in Sentry are tagged with your `SENTRY_ENVIRONMENT` value, not `local_development`. + +3. **Fan-out parity** (optional). With `FANOUT_ENABLED=false`, run a 90-day `/query` request and save the response. Then `FANOUT_ENABLED=true` and run the same request. Bodies must be byte-identical except for the JSON `"created"` timestamp. + +4. **Fan-out under load** (optional). Run a small concurrent load (5–10 parallel curl loops) against the fan-out path; watch `docker stats` for the api container and Mongo `serverStatus().connections`. Memory should stay below `mem_limit: 2g`. + +--- + +## 11. Rollback + +### 11.1 Disable beta features without changing image + +```bash +unset FANOUT_ENABLED # disables fan-out +unset SENTRY_ENVIRONMENT # falls back to local_development tag +docker compose up -d api +``` + +### 11.2 Roll back to v1.0.5 entirely + +```bash +cd /path/to/ws-availability +git fetch --tags +git checkout v1.0.5 + +# Restore the override file to point at v1.0.5 images (if you used one) +# Or delete docker-compose.override.yml and let Compose rebuild from the v1.0.5 Dockerfile. + +docker compose pull # downloads v1.0.5 images +docker compose up -d +``` + +The v1.0.5 images are at `ghcr.io/eida/ws-availability/api:1.0.5` and `.../cacher:1.0.5`. + +Restore your backed-up `config.py` if you modified it for the beta: + +```bash +cp ~/config.py.pre-1.1.0-beta.bak config.py +``` + +Rollback typically takes 30–60 seconds of API downtime. + +--- + +## 12. Reporting issues + +Open an issue at with the title prefix `[beta] ...`. Include: + +- The beta tag you're running: `git describe --tags --abbrev=0` +- `docker compose ps` output +- `docker logs fdsnws-availability-api --tail=200` (scrub Mongo creds) +- The exact request URL that misbehaved + the response (status code + first ~10 lines of body) +- For Sentry traces: the trace ID (visible in the Sentry UI URL) +- `db.serverStatus().connections` if the issue is performance-related + +For Sentry-visible errors with the beta, please also include the `environment` tag value so we can isolate the affected node. + +--- + +## 13. Known issues + +- **`/version` endpoint reports `1.1.0-beta.1`.** The version string will be stripped of the `-beta.1` suffix when the GA release is tagged. The git tag and Docker image tag are the authoritative version identifiers for the beta. +- **`test_restriction.py` has a pre-existing import error** (uses `from restriction` instead of `from apps.restriction`). Not introduced by the beta. The other 35 tests pass on the upgraded stack. +- **`numpy==2.4.0` is marked yanked** by upstream due to a backward-compat bug. It is pulled in transitively by obspy/scipy and is not used directly by the api. If you hit a numerical regression in the cacher, please report it; we may pin to `numpy<2.4` in a follow-up. +- **`maxPoolSize` doubles to `FANOUT_MAX_WORKERS` when fan-out is enabled.** If your MongoDB has a strict connection budget, plan accordingly or reduce `FANOUT_MAX_WORKERS`. + +--- + +## 14. Feedback channel + +For non-bug feedback (performance numbers, deployment friction, ideas), please email the maintainer or open a Discussion on the repo. Beta cycle is expected to last ~2 weeks; if no blocker is reported, `v1.1.0` will be tagged as stable. diff --git a/apps/globals.py b/apps/globals.py index f971f3c..59cbaa7 100644 --- a/apps/globals.py +++ b/apps/globals.py @@ -38,7 +38,7 @@ # error message constants DOCUMENTATION_URI = "http://www.fdsn.org/webservices/fdsnws-availability-1.0.pdf" SERVICE = "fdsnws-availability" -VERSION = "1.0.5" +VERSION = "1.1.0-beta.1" class Error: diff --git a/pyproject.toml b/pyproject.toml index d1da9c2..6374173 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta" [project] name = "ws-availability" -version = "1.0.5" +version = "1.1.0b1" description = "Add your description here" readme = "README.md" requires-python = ">=3.13" diff --git a/uv.lock b/uv.lock index 00a57f7..8b031e7 100644 --- a/uv.lock +++ b/uv.lock @@ -1208,7 +1208,7 @@ wheels = [ [[package]] name = "ws-availability" -version = "1.0.5" +version = "1.1.0b1" source = { editable = "." } dependencies = [ { name = "apscheduler" }, From 97760f1b5fac028d909ec96162dac10fa49ff3b2 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Sat, 23 May 2026 17:25:22 +0300 Subject: [PATCH 25/50] fix(scheduler): widen misfire_grace_time so brief delays don't skip runs MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit APScheduler's default misfire_grace_time is 1 second. If a scheduled job fires even slightly late — another job is still running, GIL contention, brief host pause — the run is silently skipped and the next fire is pushed to tomorrow. This was observed in production today (2026-05-23): the cacher container was restarted manually at 02:00:21 UTC, both startup runs succeeded, the 03:00 inventory rebuild ran fine, but the 06:00 materialized-view update fired 1.6 s late and was skipped. The function never executed, so the @sentry_sdk.monitor decorator never emitted a check-in, and Sentry alerted "missed check-in" for update-availability-view. APScheduler log line that exposed it: Run time of job "Builds the daily_streams aggregation into the availability materialized view (...)" was missed by 0:00:01.636588 Apply two changes per job: misfire_grace_time = 300 # 5 minutes; absorbs realistic jitter coalesce = True # collapse a backlog into a single run The 5-minute window is conservative — short enough that operators notice if something keeps the scheduler hung for that long, long enough that GIL/scheduler latency under any plausible load fits. coalesce=True prevents catchup storms after long downtime: if the cacher is offline overnight, only one make-up run fires when it returns, not eight. Fixes Sentry monitor 2691465f-cf32-41fa-836d-5d28811203d8. --- apps/scheduler.py | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/apps/scheduler.py b/apps/scheduler.py index 415764e..3e144b1 100644 --- a/apps/scheduler.py +++ b/apps/scheduler.py @@ -92,6 +92,13 @@ def run_materialized_view_update(): scheduler = BlockingScheduler() + # APScheduler's default misfire_grace_time is 1 second — if the scheduler + # fires the job more than 1 s late (e.g. another job is still running, GIL + # contention, brief host pause), the run is skipped and Sentry alerts a + # MISSED check-in. A 5-minute grace window absorbs realistic jitter while + # coalesce=True ensures a backlog of missed fires collapses into one run. + JOB_DEFAULTS = {"misfire_grace_time": 300, "coalesce": True} + # Schedule cache rebuilding every day at 3:00 AM (Equivalent to 0 3 * * * cron) scheduler.add_job( run_inventory_cache, @@ -99,6 +106,7 @@ def run_materialized_view_update(): id="rebuild_inventory_cache_job", name="Rebuilds the cache mapping seed IDs to restriction data from FDSNWS Station", replace_existing=True, + **JOB_DEFAULTS, ) # Schedule DB view update every day at 6:00 AM (Equivalent to 0 6 * * * cron) @@ -108,6 +116,7 @@ def run_materialized_view_update(): id="update_availability_view_job", name="Builds the daily_streams aggregation into the availability materialized view", replace_existing=True, + **JOB_DEFAULTS, ) # Run jobs once on startup to ensure persistence/freshness after a restart From f3231721f129ea6fc291c78360743f0ba39be0b2 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Sat, 23 May 2026 17:54:32 +0300 Subject: [PATCH 26/50] feat(sentry): read SENTRY_ENVIRONMENT from os.environ as a fallback MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Previously SENTRY_ENVIRONMENT was only sourced from the Config class attribute, which required every operator to add a line to their local config.py. Since docker-compose.yml already plumbs the env var into the container, allow start.py and apps/sentry.py to read it from os.environ as the second-priority source, before the local_development default. Resolution order is now: 1. Config.SENTRY_ENVIRONMENT (config.py) 2. os.environ["SENTRY_ENVIRONMENT"] (docker-compose / shell) 3. "local_development" default This means an operator can tag a deployment by either editing config.py or just exporting SENTRY_ENVIRONMENT before docker compose up — no file edit required. --- apps/sentry.py | 8 +++++++- start.py | 8 +++++++- 2 files changed, 14 insertions(+), 2 deletions(-) diff --git a/apps/sentry.py b/apps/sentry.py index c2aefd0..59fd2b4 100644 --- a/apps/sentry.py +++ b/apps/sentry.py @@ -1,3 +1,4 @@ +import os import sentry_sdk from config import Config @@ -74,7 +75,12 @@ def scrub_dict(data): def init_sentry(): """Initialize Sentry SDK if SENTRY_DSN is configured.""" if Config.SENTRY_DSN: - environment = getattr(Config, "SENTRY_ENVIRONMENT", None) or "local_development" + # Resolution order: config.py attribute -> env var -> default. + environment = ( + getattr(Config, "SENTRY_ENVIRONMENT", None) + or os.environ.get("SENTRY_ENVIRONMENT") + or "local_development" + ) sentry_sdk.init( dsn=Config.SENTRY_DSN, environment=environment, diff --git a/start.py b/start.py index 504ce8f..74faab4 100644 --- a/start.py +++ b/start.py @@ -85,8 +85,14 @@ def scrub_dict(data): # Initialize Sentry before creating the Flask app. # Defensive getattr() so a legacy config.py without these fields doesn't crash startup. +# SENTRY_ENVIRONMENT resolution order: Config attribute (config.py) -> env var (docker-compose) -> default. +# This lets operators tag a deployment without having to edit config.py on every node. if getattr(Config, "SENTRY_DSN", None): - sentry_environment = getattr(Config, "SENTRY_ENVIRONMENT", None) or "local_development" + sentry_environment = ( + getattr(Config, "SENTRY_ENVIRONMENT", None) + or os.environ.get("SENTRY_ENVIRONMENT") + or "local_development" + ) sentry_sdk.init( dsn=Config.SENTRY_DSN, environment=sentry_environment, From 61ab69e1cef7ae833d164e95afd2af1086c45165 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Sat, 23 May 2026 18:52:36 +0300 Subject: [PATCH 27/50] fix(scheduler): re-process last 4 days each run for catchup safety MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Previously run_materialized_view_update() called updater.run_updates() with no arguments, which defaults to processing only yesterday. If the cacher container missed a daily fire (and Sentry caught one such miss on 2026-05-23 due to a 1.6s misfire), the day's data would not appear in the availability view until someone manually back-processed. The legacy host cron on the deployment server runs the equivalent JavaScript view-update at 01:00 daily with `daysBack=4`, exactly to provide this safety net. The in-app scheduler must do the same so the host cron can be retired without losing that guarantee. Switch to: updater.run_updates(days_back=4) The MongoDB pipelines use `$merge whenMatched: "replace"`, so re-processing the same 4 days each day rewrites the same documents idempotently — no duplicates, no corruption. The aggregation runs in seconds even at production volume. After this lands, the host cron entry on the deployment server can be removed (single source of truth for view updates is now the in-app scheduler). --- apps/scheduler.py | 10 ++++++++-- 1 file changed, 8 insertions(+), 2 deletions(-) diff --git a/apps/scheduler.py b/apps/scheduler.py index 3e144b1..0c487f7 100644 --- a/apps/scheduler.py +++ b/apps/scheduler.py @@ -74,8 +74,14 @@ def run_materialized_view_update(): updater = AvailabilityUpdater(db) - # Run the updates using the default (last 1 day) behavior - updater.run_updates() + # Re-process the last 4 days so a missed run does not leave a permanent + # gap in the availability view. The aggregation is idempotent + # ($merge whenMatched: "replace") so re-running the same days only + # rewrites the same documents — it does not duplicate or corrupt data. + # This is the safety margin previously provided by the legacy host cron + # `mongosh ... --eval "const daysBack=4" main.js` that this scheduler + # supersedes. + updater.run_updates(days_back=4) logger.info("Completed scheduled task: Update Availability Materialized View") except Exception as e: sentry_sdk.capture_exception(e) From e542b79c4a41c41c07412c66c22c3e54e387640c Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Sat, 23 May 2026 19:11:13 +0300 Subject: [PATCH 28/50] docs(beta): rewrite the upgrade-from-v1.0.5 section as a cookbook MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Operators of other EIDA nodes need to follow a single canonical path to upgrade, not pick between branches. Rewrite §5 to be a numbered recipe with no decision points in the happy path: - §5.1 sets two shell variables once ($WSAVAIL_DIR and $NODE_TAG) - §5.2 backs up config.py, the crontab, and the current commit hash - §5.3 checks out v1.1.0-beta.1 with a verify step - §5.4 writes a .env file with SENTRY_ENVIRONMENT=${NODE_TAG}_production - §5.5 builds api + cacher images - §5.6/§5.7 swap api then cacher one at a time, each with verification - §5.8 removes the legacy host cron (if the node ever had one) - §5.9 runs the same 5-check smoke test as a fresh install - §5.10 confirms Sentry tags are flowing through - §5.11 sets expectations for the first 24 h Add a dedicated Path-B rollback block at the end of §5 with exact copy-paste commands. The general §11 rollback still exists for later post-deploy issues. Every step has a verify command with the expected output, so an operator who skips ahead can still detect a problem at the next checkpoint. Tested end-to-end on eida.gein.noa.gr today (Path B applied to the ws-availability2025 deployment). --- BETA.md | 195 +++++++++++++++++++++++++++++++++++++++++++++----------- 1 file changed, 158 insertions(+), 37 deletions(-) diff --git a/BETA.md b/BETA.md index e6e8a6f..b69bce6 100644 --- a/BETA.md +++ b/BETA.md @@ -217,82 +217,203 @@ If all five succeed, your fresh install is operational. Continue to §7 (enablin --- -## 5. Path B — Upgrade from v1.0.5 +## 5. Path B — Upgrade an existing node from v1.0.5 (cookbook) -### 5.1 Snapshot current state (safety net) +This is the path for an EIDA node operator already running `v1.0.5`. Follow the steps in order. Each step has a verification command — if its output doesn't match, **stop and investigate before continuing**. + +Total time: **~5–10 minutes** including build. API downtime: **~15 seconds × 2** (API and cacher swapped one at a time). + +### 5.1 Variables for your node + +Set these once in the shell you'll run the rest from. Replace `` with a short tag — `noa`, `resif`, `orfeus`, `ingv`, etc. This tag identifies your deployment in Sentry. ```bash -# Note the current image tags so you can roll back -docker compose images > /tmp/pre-upgrade-images.txt +export WSAVAIL_DIR=/path/to/your/ws-availability/checkout # <-- adjust +export NODE_TAG= # <-- adjust, e.g. noa +``` -# Note current commit -git -C /path/to/ws-availability rev-parse HEAD > /tmp/pre-upgrade-commit.txt +### 5.2 Back up before you change anything -# Back up your config.py somewhere safe -cp /path/to/ws-availability/config.py ~/config.py.pre-1.1.0-beta.bak +```bash +cd "$WSAVAIL_DIR" +cp config.py "$HOME/config.py.pre-1.1.0-beta.bak" +crontab -l > "$HOME/crontab.pre-1.1.0-beta.bak" 2>/dev/null +git rev-parse HEAD > "$HOME/ws-availability.pre-1.1.0-beta.commit" +echo "OK — backups written to $HOME/config.py.pre-1.1.0-beta.bak, $HOME/crontab.pre-1.1.0-beta.bak, $HOME/ws-availability.pre-1.1.0-beta.commit" ``` -### 5.2 Pull the beta tag +**Verify:** all three backup files exist. ```bash -cd /path/to/ws-availability +ls -la "$HOME"/config.py.pre-1.1.0-beta.bak "$HOME"/crontab.pre-1.1.0-beta.bak "$HOME"/ws-availability.pre-1.1.0-beta.commit +``` + +### 5.3 Fetch and check out v1.1.0-beta.1 + +```bash +cd "$WSAVAIL_DIR" git fetch --tags origin git checkout v1.1.0-beta.1 ``` -### 5.3 Update `config.py` +**Verify:** + +```bash +git log --oneline -1 +# expected: a commit on v1.1.0-beta.1 (e.g. "release: prepare v1.1.0-beta.1" or later) +grep '^VERSION' apps/globals.py +# expected: VERSION = "1.1.0-beta.1" +``` + +### 5.4 Set the per-node Sentry environment -Compare your existing `config.py` against the new `config.py.sample`: +Write the env var into a `.env` file next to `docker-compose.yml` so it survives reboots: ```bash -diff -u config.py config.py.sample | less +cd "$WSAVAIL_DIR" +echo "SENTRY_ENVIRONMENT=${NODE_TAG}_production" > .env +cat .env +# expected: SENTRY_ENVIRONMENT=_production ``` -You should see two new lines in the sample (around the Sentry section): +`.env` is read automatically by Docker Compose v2 and is gitignored. -```python -SENTRY_ENVIRONMENT = os.environ.get("SENTRY_ENVIRONMENT") or "local_development" +### 5.5 Build new images + +```bash +cd "$WSAVAIL_DIR" +docker compose build api cacher ``` -You do **not** need to add this to your `config.py` — the app reads it via `getattr(..., None)` and falls back to env-var lookup. But adding it makes the variable visible alongside the other Sentry settings, which is recommended. +**Verify:** the build finishes with `Successfully tagged ws-availability*_api:latest` and `..._cacher:latest`. No errors or warnings about ObsPy or pymongo. ~3–5 min on a 4-core box. -### 5.4 Set the per-node Sentry environment +### 5.6 Phase 1 — replace the API container only + +```bash +cd "$WSAVAIL_DIR" +docker compose up -d --no-deps --build api +sleep 5 +``` -If you want events tagged correctly in Sentry (instead of `local_development`): +**Verify:** ```bash -# Option 1 — shell env var -export SENTRY_ENVIRONMENT=your_node_production +docker ps --filter name=fdsnws-availability-api --format "{{.Status}} {{.Image}}" +# expected: Up ws-availability*_api + +curl -s http://127.0.0.1:9001/version +# expected: 1.1.0-beta.1 + +curl -s -o /dev/null -w "%{http_code}\n" "http://127.0.0.1:9001/extent?net=&sta=&start=2024-01-01&end=2024-01-02" +# expected: 200 -# Option 2 — .env file in the repo root -echo "SENTRY_ENVIRONMENT=your_node_production" >> .env +docker exec fdsnws-availability-api env | grep SENTRY_ENVIRONMENT +# expected: SENTRY_ENVIRONMENT=_production ``` -### 5.5 Create the compose override for pre-built images (optional) +If `/version` reports the OLD version or any check fails, **roll back the API now** (§11.2) before continuing. -Same as §4.3. If you previously built images locally (no override file), you can keep doing that — Compose will rebuild on the new Python 3.13 base. +### 5.7 Phase 2 — replace the cacher container -### 5.6 Restart the stack +```bash +cd "$WSAVAIL_DIR" +docker compose up -d --no-deps --build cacher +``` + +The cacher runs two startup tasks immediately: an inventory refresh from FDSNWS-Station (~15–30 s) and a materialized-view update over the last 4 days (~30 s – several minutes depending on your data volume). + +**Verify** by tailing the log until you see "Scheduler started": ```bash -# If using pre-built images -docker compose pull -docker compose up -d +docker logs -f fdsnws-availability-cacher 2>&1 | grep --line-buffered -E "Scheduler started|ERROR|Traceback" +# wait for: "Scheduler started" then Ctrl-C +``` + +Expected log lines, in order: -# If building locally -docker compose build --no-cache # --no-cache forces the python:3.13 base pull -docker compose up -d ``` +Initializing APScheduler... +Running initial startup tasks... +Starting scheduled task: Rebuild Inventory Cache +Completed scheduled task: Rebuild Inventory Cache +Starting scheduled task: Update Availability Materialized View +Processing WFCatalog entries ... start: '', end: '' started! +Processing WFCatalog entries ... completed! +Completed scheduled task: Update Availability Materialized View +Scheduler started successfully. Waiting for jobs to execute... +Added job "Rebuilds the cache mapping seed IDs to restriction data from FDSNWS Station" +Added job "Builds the daily_streams aggregation into the availability materialized view" +Scheduler started +``` + +If you see `ERROR` or `Traceback` instead, **roll back the cacher** (§11.2) and report at §12. + +### 5.8 If your node had a host-cron entry for `views/main.js` + +Some node deployments (NOA, possibly others) added a host-level cron at `01:00 UTC` like: + +``` +0 1 * * * cd /path/to/old-ws-availability/views && mongosh -u ... --eval "const daysBack=4" main.js +``` + +It's now redundant — the in-app scheduler does the same work at 06:00 UTC with `days_back=4`. Remove it: + +```bash +crontab -l | grep -v "ws-availability.*views.*main.js" | crontab - +``` + +**Verify:** + +```bash +crontab -l | grep -c "ws-availability" +# expected: 0 +``` + +If you're unsure whether your node has such a cron, this command shows you safely: + +```bash +crontab -l | grep -iE "ws-availability|fdsnws-availability" +``` + +### 5.9 Final smoke test — same 5 checks as a fresh install + +```bash +curl -sf http://127.0.0.1:9001/ | grep -q FDSNWS-Availability && echo "Landing OK" +curl -s http://127.0.0.1:9001/version +curl -s "http://127.0.0.1:9001/extent?net=&sta=&start=2024-01-01&end=2024-01-02" | head -5 +curl -s "http://127.0.0.1:9001/query?net=&sta=&start=2024-01-01&end=2024-01-02&format=json" | head -c 200 +curl -s -o /dev/null -w "%{http_code}\n" "http://127.0.0.1:9001/extent?network=" +# last command expected: 413 (broad-query rejection from Issue #60) +``` + +Replace `` and `` with a station you know has data. -Expected behavior: about **10–30 seconds** of API downtime while the api container restarts. The cacher will not re-harvest the inventory on restart (it reads from the persisted Redis cache), so the inventory stays available throughout the upgrade. +### 5.10 Confirm Sentry tag is flowing through -### 5.7 Smoke test +Hit your service a couple more times and then check Sentry: filter by `environment:_production`. You should see transactions arriving with that tag and no events with `local_development`. -Run the same five checks from §4.9. They should all return the same outputs they did on v1.0.5 (modulo the JSON `"created"` timestamp). +### 5.11 You're done -### 5.8 If something is wrong — roll back +Watch logs and Sentry for the next 24 hours. The first real scheduled run happens at **06:00 UTC tomorrow** (`update-availability-view` job with `days_back=4`). If it fires on time and the Sentry monitor stays green, you've validated the new in-app scheduler in your environment. -See §11 (Rollback) for the exact commands. Rolling back from the beta to v1.0.5 takes about the same time as the upgrade. +--- + +## Rollback (Path B — to v1.0.5) + +If anything goes wrong in §5.6–5.9, this command set restores the previous state. Run from `$WSAVAIL_DIR`: + +```bash +cd "$WSAVAIL_DIR" +git checkout v1.0.5 +rm -f .env +docker compose build api cacher +docker compose up -d --no-deps api cacher +# Restore the old host cron only if you ran §5.8: +crontab "$HOME/crontab.pre-1.1.0-beta.bak" +# Verify: +curl -s http://127.0.0.1:9001/version +# expected: 1.0.4 +``` --- From d5afc48f35c3530d24736f61bba60e651b31b0af Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Mon, 25 May 2026 00:30:55 +0300 Subject: [PATCH 29/50] docs(beta): trim BETA.md to install steps only Cut the risk tables, "what's new" exposition, fan-out section, post-deploy monitoring, what-to-test scenarios, known issues, and feedback sections. They were useful context but not what an EIDA node operator needs at install time. Final structure: Prerequisites, Install (8 numbered steps with copy-paste commands), Verify (4 curls), Rollback. 506 lines -> 110 lines. --- BETA.md | 640 ++++++-------------------------------------------------- 1 file changed, 62 insertions(+), 578 deletions(-) diff --git a/BETA.md b/BETA.md index b69bce6..4088bad 100644 --- a/BETA.md +++ b/BETA.md @@ -1,626 +1,110 @@ -# ws-availability — Beta Testing Guide (v1.1.0-beta.1) +# ws-availability v1.1.0-beta.1 — Install -You are running a **beta release** of `ws-availability`. This document is for sysadmins of EIDA nodes who are deploying the beta against their own WFCatalog MongoDB. If you are looking for the stable release, use [`v1.0.5`](https://github.com/EIDA/ws-availability/releases/tag/v1.0.5). +Beta release. API-compatible with v1.0.5. Default behavior unchanged unless you opt in via env vars. -The beta is **API-compatible** with `v1.0.5` — request shapes, response bodies, status codes, and error messages are unchanged. All new behavior is opt-in via environment variables. If you do not set any of the new env vars, the beta behaves like the stable release. +## Prerequisites -> **Release status:** the beta lives on `EIDA/ws-availability` once the PR is merged and the `v1.1.0-beta.1` tag is pushed. The CI workflow then publishes container images to `ghcr.io/eida/ws-availability/api:1.1.0-beta.1` and `ghcr.io/eida/ws-availability/cacher:1.1.0-beta.1`. If you are testing the beta **before** the PR is merged, replace the clone URL with the contributor's fork (the PR description will link it) and the image namespace with `ghcr.io//ws-availability/...`. Everything else in this guide is unchanged. +- Docker with the `docker-compose` v1.x (or `docker compose` v2) plugin. +- Running WFCatalog MongoDB ≥ 4.2 reachable from the host. +- Port 9001 free on the host. +- ~2 GB RAM. ---- +## Install -## 1. What's new since v1.0.5 - -| Area | Change | Risk | -|------|--------|------| -| Python runtime | Container base image bumped to `python:3.13-slim`. Major deps bumped: Flask 2.3 → 3.1, gunicorn 20 → 26, pymongo 3.12 → 4.17, redis 4.4 → 7.4, obspy 1.3 → 1.5. | Medium — major version bumps. Smoke-tested by the maintainer, but please report any regressions. | -| Sentry environment | New `SENTRY_ENVIRONMENT` env var tags Sentry events per node (e.g. `noa_production`). Defaults to `local_development` if unset. | Low — affects only event tagging in Sentry. | -| Parallel MongoDB fan-out | Optional time-window parallelism for long-range queries. Off by default. See §6. | Low when off; medium when on — read §6 before enabling. | - -What did **not** change: query/extent endpoints, response formats, restriction filtering, the `MAX_DATA_ROWS` row cap, the broad-query rejection from Issue #60. - ---- - -## 2. Pre-flight checklist - -Run through this list **before** starting the deployment. Items marked **must** will block the deploy; **should** items will not crash the install but may produce no data. - -- [ ] **must** — Docker ≥ 20.10 installed with Compose v2 plugin. Verify with `docker compose version`. -- [ ] **must** — Outbound HTTPS to `ghcr.io` reachable from the host (for `docker compose pull`). If you cannot reach ghcr, see §4.2 (build from source). -- [ ] **must** — A running WFCatalog MongoDB ≥ 4.2 reachable from the host. Test with: - ```bash - mongosh "mongodb://USR:PWD@MONGO_HOST:27017/wfrepo?authSource=wfrepo" --eval 'db.runCommand({ping:1})' - ``` -- [ ] **should** — The `availability` collection or materialized view exists in your MongoDB. If it does not, see §5.4. -- [ ] **should** — The compound index on `availability` exists. Verify with `db.availability.getIndexes()`. If missing, create it (see §5.5) — without it, every query becomes a collection scan. -- [ ] **must** — Port `9001/tcp` available on the host (or whichever port you bind to). Verify with `ss -tlnp | grep :9001`. -- [ ] **should** — An FDSNWS-Station endpoint URL reachable from the host. Used by the cacher to harvest the restriction inventory. Test with `curl -sf "?level=network&format=text" | head`. -- [ ] **should** — At least **2 GB** free RAM (the api container is capped at `mem_limit: 2g`) and **500 MB** for the cacher. -- [ ] **optional** — A Sentry DSN if you want error/performance monitoring. The beta runs fine with Sentry disabled. - -If any **must** item fails, stop and resolve it before continuing. - ---- - -## 3. Pick your deployment path - -| Path | When to use | Section | -|------|-------------|---------| -| **A. Fresh install** | No `ws-availability` running on this host. | §4 | -| **B. Upgrade from v1.0.5** | Currently running v1.0.5 (or earlier) on this host. | §5 | -| **C. Side-by-side test** | Want to test the beta on a different port without touching your existing v1.0.5 deployment. | §6 | - ---- - -## 4. Path A — Fresh install - -### 4.1 Clone and checkout the beta +Set two shell variables once. Replace `` with a short tag (`noa`, `resif`, `orfeus`, …). ```bash -git clone https://github.com/EIDA/ws-availability.git -cd ws-availability -git fetch --tags -git checkout v1.1.0-beta.1 +export WSAVAIL_DIR=/path/to/your/ws-availability/checkout # adjust +export NODE_TAG= # adjust ``` -### 4.2 Create `config.py` from the sample - -```bash -cp config.py.sample config.py -``` - -Edit `config.py` and set the **production** branch values to match your environment. The minimum you must set: - -```python -if RUNMODE == "production": - MONGODB_HOST = "10.0.0.50" # your Mongo host (or 127.0.0.1) - MONGODB_PORT = 27017 - MONGODB_USR = "wfrepouser" # leave empty if no auth - MONGODB_PWD = "your-password" - MONGODB_NAME = "wfrepo" - FDSNWS_STATION_URL = "https://your-node.example/fdsnws/station/1/query" - CACHE_HOST = "127.0.0.1" # Redis lives inside docker host-network - CACHE_PORT = 6379 - CACHE_INVENTORY_KEY = "inventory" - CACHE_INVENTORY_PERIOD = 0 # 0 = never expire; refreshed by cacher schedule - CACHE_RESP_PERIOD = 1200 # cache responses for 20 minutes -``` - -Sentry (optional) — set `SENTRY_DSN` either inside `config.py` or via env var before running `docker compose up`. - -> **Heads-up:** `config.py` is in `.gitignore`. Each operator maintains their own. Do **not** commit it. - -### 4.3 Create a compose override to use the pre-built image - -Create `docker-compose.override.yml` next to `docker-compose.yml`. This pins the api and cacher to the published beta images: - -```yaml -services: - api: - image: ghcr.io/eida/ws-availability/api:1.1.0-beta.1 - cacher: - image: ghcr.io/eida/ws-availability/cacher:1.1.0-beta.1 -``` - -Compose v2 reads `docker-compose.override.yml` automatically and merges it with `docker-compose.yml`. Because the override sets `image:`, `docker compose up` will pull the published image instead of running the local `build:` step — provided you start with `docker compose up` (not `docker compose build`). - -If your host cannot reach `ghcr.io`, skip this file and Compose will build the images locally from the Dockerfiles. - -### 4.4 Set per-node environment variables - -These must be exported in the same shell where you run `docker compose up`: - -```bash -# Sentry environment tag — REQUIRED if SENTRY_DSN is set -export SENTRY_ENVIRONMENT=your_node_production # or your_node_staging -# Mongo overrides — only set if different from config.py -# export MONGODB_HOST=10.0.0.50 -# export MONGODB_USR=wfrepouser -# export MONGODB_PWD='your-password' -``` +1. Back up. -You can also write these to a `.env` file in the repo root; Compose v2 reads `.env` automatically. Recommended for production: - -```ini -# .env (DO NOT COMMIT) -SENTRY_ENVIRONMENT=your_node_production -MONGODB_HOST=10.0.0.50 -MONGODB_USR=wfrepouser -MONGODB_PWD=your-password -``` - -> **Heads-up:** `.env` is **not** in the repo's `.gitignore` by default. Add it to your local `.gitignore` or keep the file outside the working tree. - -### 4.5 Pull images and start + ```bash + cd "$WSAVAIL_DIR" + cp config.py "$HOME/config.py.pre-1.1.0-beta.bak" 2>/dev/null || true + crontab -l > "$HOME/crontab.pre-1.1.0-beta.bak" 2>/dev/null || true + git rev-parse HEAD > "$HOME/ws-availability.pre-1.1.0-beta.commit" 2>/dev/null || true + ``` -```bash -docker compose pull # downloads ghcr images (~200 MB total) -docker compose up -d # starts cache, cacher, api in detached mode -docker compose ps # should show 3 containers, all "running" -``` +2. Check out the beta. -Expected output of `docker compose ps`: + ```bash + git fetch --tags origin + git checkout v1.1.0-beta.1 + ``` -``` -NAME STATUS PORTS -fdsnws-availability-cache Up 5 seconds -fdsnws-availability-cacher Up 5 seconds -fdsnws-availability-api Up 5 seconds -``` +3. Set the per-node Sentry tag. -### 4.6 Wait for the cacher to harvest the restriction inventory + ```bash + echo "SENTRY_ENVIRONMENT=${NODE_TAG}_production" > .env + ``` -The cacher container fetches the restriction inventory from `FDSNWS_STATION_URL` on first run. This takes **anywhere from 30 seconds to several minutes** depending on how many networks your FDSNWS-Station endpoint exposes. +4. If this is a first install, copy and edit `config.py`. (Skip on upgrade — your existing `config.py` is kept.) -Watch the cacher log: + ```bash + cp config.py.sample config.py + $EDITOR config.py + ``` -```bash -docker logs -f fdsnws-availability-cacher -``` +5. Build images. -You are looking for the line: + ```bash + docker-compose build api cacher + ``` -``` -INFO Completed caching inventory from FDSNWS-Station -``` +6. Replace the API container. -Once that appears, the api container will be able to handle requests that touch the restriction logic (most queries do). + ```bash + docker-compose up -d --no-deps --build api + ``` -> **If the cacher fails:** check that `FDSNWS_STATION_URL` is reachable from inside the container with `docker exec fdsnws-availability-cacher curl -sI "$FDSNWS_STATION_URL?level=network"`. +7. Replace the cacher container. -### 4.7 Initial materialized view (only if it does not exist yet) + ```bash + docker-compose up -d --no-deps --build cacher + ``` -If your MongoDB does not yet have an `availability` collection populated from the WFCatalog `daily_streams` / `c_segments` collections, run the initial build. This is a **one-time** operation and is **independent of ws-availability** — the same step as the v1.0.5 README. + Wait for the cacher startup tasks to finish: -```bash -# Adjust daysBack as needed. 365 = back-fill the last year. -mongosh -u "$MONGODB_USR" -p "$MONGODB_PWD" --authenticationDatabase wfrepo \ - --eval "daysBack=365" \ - /path/to/checkout/views/main.js -``` + ```bash + docker logs -f fdsnws-availability-cacher 2>&1 | grep --line-buffered -E "Scheduler started|ERROR|Traceback" + ``` -This may take **tens of minutes to several hours** depending on your data volume. Tail Mongo logs to monitor progress. + Stop tailing (`Ctrl-C`) once you see `Scheduler started`. -### 4.8 Create the compound index (one-time) +8. If your node had a host cron triggering `views/main.js`, remove it. It is now redundant. -```bash -mongosh -u "$MONGODB_USR" -p "$MONGODB_PWD" --authenticationDatabase wfrepo --eval ' - use wfrepo; - db.availability.createIndex({ net: 1, sta: 1, loc: 1, cha: 1, ts: 1, te: 1 }); - db.availability.getIndexes(); -' -``` + ```bash + crontab -l | grep -v "ws-availability.*views.*main.js" | crontab - + ``` -Without this index, every API query becomes a collection scan and the beta will be no faster than v1.0.5 — fan-out won't help either. +## Verify -### 4.9 Smoke test +Replace `` and `` with one of your live stations. ```bash -# Landing page -curl -sf http://127.0.0.1:9001/ | grep -q FDSNWS-Availability && echo "Landing OK" - -# Version curl -s http://127.0.0.1:9001/version # expected: 1.1.0-beta.1 -# Extent — replace HL with one of your networks -curl -s "http://127.0.0.1:9001/extent?net=HL&start=2024-01-01&end=2024-01-02" | head -5 - -# Query in JSON -curl -s "http://127.0.0.1:9001/query?net=HL&start=2024-01-01&end=2024-01-02&format=json" | head +curl -s -o /dev/null -w "%{http_code}\n" \ + "http://127.0.0.1:9001/extent?net=&sta=&start=2024-01-01&end=2024-01-02" +# expected: 200 -# Broad-query rejection (Issue #60). MUST return 413. -curl -s -o /dev/null -w "%{http_code}\n" "http://127.0.0.1:9001/extent?network=HL" +curl -s -o /dev/null -w "%{http_code}\n" "http://127.0.0.1:9001/extent?network=" # expected: 413 -``` - -If all five succeed, your fresh install is operational. Continue to §7 (enabling fan-out) or §10 (what to test). - ---- - -## 5. Path B — Upgrade an existing node from v1.0.5 (cookbook) - -This is the path for an EIDA node operator already running `v1.0.5`. Follow the steps in order. Each step has a verification command — if its output doesn't match, **stop and investigate before continuing**. - -Total time: **~5–10 minutes** including build. API downtime: **~15 seconds × 2** (API and cacher swapped one at a time). - -### 5.1 Variables for your node - -Set these once in the shell you'll run the rest from. Replace `` with a short tag — `noa`, `resif`, `orfeus`, `ingv`, etc. This tag identifies your deployment in Sentry. - -```bash -export WSAVAIL_DIR=/path/to/your/ws-availability/checkout # <-- adjust -export NODE_TAG= # <-- adjust, e.g. noa -``` - -### 5.2 Back up before you change anything - -```bash -cd "$WSAVAIL_DIR" -cp config.py "$HOME/config.py.pre-1.1.0-beta.bak" -crontab -l > "$HOME/crontab.pre-1.1.0-beta.bak" 2>/dev/null -git rev-parse HEAD > "$HOME/ws-availability.pre-1.1.0-beta.commit" -echo "OK — backups written to $HOME/config.py.pre-1.1.0-beta.bak, $HOME/crontab.pre-1.1.0-beta.bak, $HOME/ws-availability.pre-1.1.0-beta.commit" -``` - -**Verify:** all three backup files exist. - -```bash -ls -la "$HOME"/config.py.pre-1.1.0-beta.bak "$HOME"/crontab.pre-1.1.0-beta.bak "$HOME"/ws-availability.pre-1.1.0-beta.commit -``` - -### 5.3 Fetch and check out v1.1.0-beta.1 - -```bash -cd "$WSAVAIL_DIR" -git fetch --tags origin -git checkout v1.1.0-beta.1 -``` - -**Verify:** - -```bash -git log --oneline -1 -# expected: a commit on v1.1.0-beta.1 (e.g. "release: prepare v1.1.0-beta.1" or later) -grep '^VERSION' apps/globals.py -# expected: VERSION = "1.1.0-beta.1" -``` - -### 5.4 Set the per-node Sentry environment - -Write the env var into a `.env` file next to `docker-compose.yml` so it survives reboots: - -```bash -cd "$WSAVAIL_DIR" -echo "SENTRY_ENVIRONMENT=${NODE_TAG}_production" > .env -cat .env -# expected: SENTRY_ENVIRONMENT=_production -``` - -`.env` is read automatically by Docker Compose v2 and is gitignored. - -### 5.5 Build new images - -```bash -cd "$WSAVAIL_DIR" -docker compose build api cacher -``` - -**Verify:** the build finishes with `Successfully tagged ws-availability*_api:latest` and `..._cacher:latest`. No errors or warnings about ObsPy or pymongo. ~3–5 min on a 4-core box. - -### 5.6 Phase 1 — replace the API container only - -```bash -cd "$WSAVAIL_DIR" -docker compose up -d --no-deps --build api -sleep 5 -``` - -**Verify:** - -```bash -docker ps --filter name=fdsnws-availability-api --format "{{.Status}} {{.Image}}" -# expected: Up ws-availability*_api - -curl -s http://127.0.0.1:9001/version -# expected: 1.1.0-beta.1 - -curl -s -o /dev/null -w "%{http_code}\n" "http://127.0.0.1:9001/extent?net=&sta=&start=2024-01-01&end=2024-01-02" -# expected: 200 docker exec fdsnws-availability-api env | grep SENTRY_ENVIRONMENT # expected: SENTRY_ENVIRONMENT=_production ``` -If `/version` reports the OLD version or any check fails, **roll back the API now** (§11.2) before continuing. - -### 5.7 Phase 2 — replace the cacher container - -```bash -cd "$WSAVAIL_DIR" -docker compose up -d --no-deps --build cacher -``` - -The cacher runs two startup tasks immediately: an inventory refresh from FDSNWS-Station (~15–30 s) and a materialized-view update over the last 4 days (~30 s – several minutes depending on your data volume). - -**Verify** by tailing the log until you see "Scheduler started": - -```bash -docker logs -f fdsnws-availability-cacher 2>&1 | grep --line-buffered -E "Scheduler started|ERROR|Traceback" -# wait for: "Scheduler started" then Ctrl-C -``` - -Expected log lines, in order: - -``` -Initializing APScheduler... -Running initial startup tasks... -Starting scheduled task: Rebuild Inventory Cache -Completed scheduled task: Rebuild Inventory Cache -Starting scheduled task: Update Availability Materialized View -Processing WFCatalog entries ... start: '', end: '' started! -Processing WFCatalog entries ... completed! -Completed scheduled task: Update Availability Materialized View -Scheduler started successfully. Waiting for jobs to execute... -Added job "Rebuilds the cache mapping seed IDs to restriction data from FDSNWS Station" -Added job "Builds the daily_streams aggregation into the availability materialized view" -Scheduler started -``` - -If you see `ERROR` or `Traceback` instead, **roll back the cacher** (§11.2) and report at §12. - -### 5.8 If your node had a host-cron entry for `views/main.js` - -Some node deployments (NOA, possibly others) added a host-level cron at `01:00 UTC` like: - -``` -0 1 * * * cd /path/to/old-ws-availability/views && mongosh -u ... --eval "const daysBack=4" main.js -``` - -It's now redundant — the in-app scheduler does the same work at 06:00 UTC with `days_back=4`. Remove it: - -```bash -crontab -l | grep -v "ws-availability.*views.*main.js" | crontab - -``` - -**Verify:** - -```bash -crontab -l | grep -c "ws-availability" -# expected: 0 -``` - -If you're unsure whether your node has such a cron, this command shows you safely: - -```bash -crontab -l | grep -iE "ws-availability|fdsnws-availability" -``` - -### 5.9 Final smoke test — same 5 checks as a fresh install - -```bash -curl -sf http://127.0.0.1:9001/ | grep -q FDSNWS-Availability && echo "Landing OK" -curl -s http://127.0.0.1:9001/version -curl -s "http://127.0.0.1:9001/extent?net=&sta=&start=2024-01-01&end=2024-01-02" | head -5 -curl -s "http://127.0.0.1:9001/query?net=&sta=&start=2024-01-01&end=2024-01-02&format=json" | head -c 200 -curl -s -o /dev/null -w "%{http_code}\n" "http://127.0.0.1:9001/extent?network=" -# last command expected: 413 (broad-query rejection from Issue #60) -``` - -Replace `` and `` with a station you know has data. - -### 5.10 Confirm Sentry tag is flowing through - -Hit your service a couple more times and then check Sentry: filter by `environment:_production`. You should see transactions arriving with that tag and no events with `local_development`. - -### 5.11 You're done - -Watch logs and Sentry for the next 24 hours. The first real scheduled run happens at **06:00 UTC tomorrow** (`update-availability-view` job with `days_back=4`). If it fires on time and the Sentry monitor stays green, you've validated the new in-app scheduler in your environment. - ---- - -## Rollback (Path B — to v1.0.5) - -If anything goes wrong in §5.6–5.9, this command set restores the previous state. Run from `$WSAVAIL_DIR`: +## Rollback ```bash cd "$WSAVAIL_DIR" git checkout v1.0.5 rm -f .env -docker compose build api cacher -docker compose up -d --no-deps api cacher -# Restore the old host cron only if you ran §5.8: +docker-compose build api cacher +docker-compose up -d --no-deps api cacher crontab "$HOME/crontab.pre-1.1.0-beta.bak" -# Verify: -curl -s http://127.0.0.1:9001/version -# expected: 1.0.4 -``` - ---- - -## 6. Path C — Side-by-side test (different port) - -If you want to test the beta without touching your live v1.0.5 deployment, deploy it under a different `COMPOSE_PROJECT_NAME` and a different host port. - -### 6.1 Clone into a separate directory - -```bash -git clone https://github.com/EIDA/ws-availability.git ws-availability-beta -cd ws-availability-beta -git checkout v1.1.0-beta.1 -cp config.py.sample config.py && $EDITOR config.py -``` - -### 6.2 Override the api port and project name - -Create `docker-compose.override.yml`: - -```yaml -services: - cache: - container_name: fdsnws-availability-beta-cache - cacher: - image: ghcr.io/eida/ws-availability/cacher:1.1.0-beta.1 - container_name: fdsnws-availability-beta-cacher - api: - image: ghcr.io/eida/ws-availability/api:1.1.0-beta.1 - container_name: fdsnws-availability-beta-api - # Override the port the api binds to (Compose can't remap host ports under network_mode: host, - # so we change the gunicorn bind address instead) - command: gunicorn --bind 0.0.0.0:9101 --workers 1 --timeout 600 start:app -``` - -### 6.3 Start with a distinct project name - -```bash -docker compose -p ws-availability-beta up -d -``` - -The beta now listens on `9101` while your v1.0.5 keeps serving on `9001`. Both use the same MongoDB and Redis (which is fine — both keys/cache entries are compatible). - -> **Caveat:** because both stacks use `network_mode: host`, the Redis cache containers will conflict on port 6379 unless you also remap. The simplest path is to point the beta cacher/api at the existing Redis on 6379 and **not** start a second Redis container — set `cache.deploy.replicas: 0` or use `docker compose --no-deps up -d api cacher` to skip the cache service. - ---- - -## 7. Enabling parallel fan-out (optional) - -The fan-out path runs N parallel MongoDB cursors over disjoint time windows instead of one sequential cursor. It is most effective for long-range, narrow-NSLC queries (months/years × a few channels), where wall-clock time is dominated by cursor round-trips. - -**Enable for one node:** - -```bash -export FANOUT_ENABLED=true -# Optional tuning -export FANOUT_MAX_WORKERS=4 # default 4 -export FANOUT_MIN_DAYS=7 # below this, single-cursor path is used -export FANOUT_WINDOW_DAYS=30 # target shard size - -docker compose up -d api # restart the api container only -``` - -**What to watch:** - -1. **Mongo connection count** — peak rises to `gunicorn_workers × FANOUT_MAX_WORKERS` (with default `--workers 1`, that's 4 vs the prior 1). Verify: - - ```javascript - db.serverStatus().connections - ``` - - Lower `FANOUT_MAX_WORKERS` if your Mongo has a tight budget. - -2. **Memory ceiling** — each shard still respects the `MAX_DATA_ROWS + 1` cursor cap. Worst-case in-flight memory is `N × MAX_DATA_ROWS` (where N ≤ `FANOUT_MAX_WORKERS`), but Layer 3 broad-query rejection (Issue #60) already blocks queries that could approach this. - -3. **Response parity** — `FANOUT_ENABLED=true` and `=false` must produce byte-identical response bodies for the same request (modulo the JSON `"created"` timestamp). A unit test enforces this against in-memory mocks. Please verify against your real Mongo for a few representative requests. - -4. **Sentry traces** — each shard appears as a `db.mongo.shard` child span with `ts_start` / `ts_end` tags. The parallelism is visible in the trace timeline. - -**Roll back fan-out without redeploying:** - -```bash -unset FANOUT_ENABLED # or set to false -docker compose up -d api -``` - ---- - -## 8. Configuration reference - -| Env var | Required? | Default | Used by | What it does | -|---------|-----------|---------|---------|--------------| -| `RUNMODE` | yes | `production` (compose) | both | Picks production branch in `config.py`. | -| `MONGODB_HOST` | yes | `127.0.0.1` | both | WFCatalog MongoDB host. | -| `MONGODB_PORT` | no | `27017` | both | | -| `MONGODB_USR` / `MONGODB_PWD` | yes if Mongo auth is on | `""` | both | | -| `MONGODB_NAME` | no | `wfrepo` | both | DB name; also used as `authSource`. | -| `CACHE_HOST` | yes | `127.0.0.1` | both | Redis host. | -| `FDSNWS_STATION_URL` | yes | empty | cacher | Used to harvest restriction inventory. | -| **`SENTRY_DSN`** | no | empty | both | Set in `config.py` or env. Empty = Sentry disabled. | -| **`SENTRY_ENVIRONMENT`** | recommended | `local_development` | both | **New in 1.1.0-beta.** Tags events per node. Suggested values: `_production`, `_staging`. | -| `SENTRY_TRACES_SAMPLE_RATE` | no | `1.0` | both | 0.0 to 1.0. Set lower in production to reduce trace volume. | -| **`FANOUT_ENABLED`** | no | `false` | api | **New in 1.1.0-beta.** Enables parallel MongoDB fan-out. See §7. | -| **`FANOUT_MAX_WORKERS`** | no | `4` | api | Max parallel shards per request. | -| **`FANOUT_MIN_DAYS`** | no | `7` | api | Below this range size, single-cursor path is used. | -| **`FANOUT_WINDOW_DAYS`** | no | `30` | api | Target shard size. | -| `MAX_DATA_ROWS` | no | `2500000` | api | Row cap; over this returns 413. | -| `MAX_STREAMS` | no | `2000` | api | Stream-count cap. | - ---- - -## 9. Post-deploy monitoring - -For the first 24 hours after deployment, watch: - -1. **Container health** — `docker compose ps` should show all three containers `Up` with no restart loops. `docker stats fdsnws-availability-api` should stay below the `mem_limit: 2g` cap. - -2. **API logs** — `docker logs --tail=200 -f fdsnws-availability-api`. Look for: - - `[SENTRY] Initialized. env=...` at startup — confirms `SENTRY_ENVIRONMENT` is picked up correctly. - - `Number of collected rows: N` per request — sanity-check N is reasonable. - - Any `Traceback` or `ERROR` — report per §12. - -3. **Cacher logs** — `docker logs --tail=100 -f fdsnws-availability-cacher`. The scheduled jobs run at 03:00 (inventory refresh) and 06:00 (materialized view daily append). Confirm both run without errors within their first window. - -4. **Sentry dashboard** — if configured, filter by your `environment` tag. New events from the beta should be tagged with your `SENTRY_ENVIRONMENT` value, not `local_development`. - -5. **Request latency** — compare median and p95 against v1.0.5 for representative request shapes. The beta should be **no slower** than v1.0.5 with fan-out off; with fan-out on, multi-day queries should be 2–3× faster. - ---- - -## 10. What to test specifically - -These scenarios are most likely to surface beta-only regressions. - -1. **Major dep bumps.** Anything that worked in v1.0.5 should keep working. Pay attention to: - - Long-time-range queries (cursor iteration in pymongo 4.x has changed defaults). - - Restriction inventory harvest in the cacher (obspy 1.5 has different XML parser behavior in some edge cases). - - Flask routes with unusual headers / encodings (flask 3 dropped some legacy code paths). - -2. **Sentry tagging.** If you set `SENTRY_DSN`, confirm events in Sentry are tagged with your `SENTRY_ENVIRONMENT` value, not `local_development`. - -3. **Fan-out parity** (optional). With `FANOUT_ENABLED=false`, run a 90-day `/query` request and save the response. Then `FANOUT_ENABLED=true` and run the same request. Bodies must be byte-identical except for the JSON `"created"` timestamp. - -4. **Fan-out under load** (optional). Run a small concurrent load (5–10 parallel curl loops) against the fan-out path; watch `docker stats` for the api container and Mongo `serverStatus().connections`. Memory should stay below `mem_limit: 2g`. - ---- - -## 11. Rollback - -### 11.1 Disable beta features without changing image - -```bash -unset FANOUT_ENABLED # disables fan-out -unset SENTRY_ENVIRONMENT # falls back to local_development tag -docker compose up -d api -``` - -### 11.2 Roll back to v1.0.5 entirely - -```bash -cd /path/to/ws-availability -git fetch --tags -git checkout v1.0.5 - -# Restore the override file to point at v1.0.5 images (if you used one) -# Or delete docker-compose.override.yml and let Compose rebuild from the v1.0.5 Dockerfile. - -docker compose pull # downloads v1.0.5 images -docker compose up -d -``` - -The v1.0.5 images are at `ghcr.io/eida/ws-availability/api:1.0.5` and `.../cacher:1.0.5`. - -Restore your backed-up `config.py` if you modified it for the beta: - -```bash -cp ~/config.py.pre-1.1.0-beta.bak config.py ``` - -Rollback typically takes 30–60 seconds of API downtime. - ---- - -## 12. Reporting issues - -Open an issue at with the title prefix `[beta] ...`. Include: - -- The beta tag you're running: `git describe --tags --abbrev=0` -- `docker compose ps` output -- `docker logs fdsnws-availability-api --tail=200` (scrub Mongo creds) -- The exact request URL that misbehaved + the response (status code + first ~10 lines of body) -- For Sentry traces: the trace ID (visible in the Sentry UI URL) -- `db.serverStatus().connections` if the issue is performance-related - -For Sentry-visible errors with the beta, please also include the `environment` tag value so we can isolate the affected node. - ---- - -## 13. Known issues - -- **`/version` endpoint reports `1.1.0-beta.1`.** The version string will be stripped of the `-beta.1` suffix when the GA release is tagged. The git tag and Docker image tag are the authoritative version identifiers for the beta. -- **`test_restriction.py` has a pre-existing import error** (uses `from restriction` instead of `from apps.restriction`). Not introduced by the beta. The other 35 tests pass on the upgraded stack. -- **`numpy==2.4.0` is marked yanked** by upstream due to a backward-compat bug. It is pulled in transitively by obspy/scipy and is not used directly by the api. If you hit a numerical regression in the cacher, please report it; we may pin to `numpy<2.4` in a follow-up. -- **`maxPoolSize` doubles to `FANOUT_MAX_WORKERS` when fan-out is enabled.** If your MongoDB has a strict connection budget, plan accordingly or reduce `FANOUT_MAX_WORKERS`. - ---- - -## 14. Feedback channel - -For non-bug feedback (performance numbers, deployment friction, ideas), please email the maintainer or open a Discussion on the repo. Beta cycle is expected to last ~2 weeks; if no blocker is reported, `v1.1.0` will be tagged as stable. From cecfa346b9a6a7b041975e1da18652e7d4d488e1 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Mon, 25 May 2026 00:37:19 +0300 Subject: [PATCH 30/50] =?UTF-8?q?docs(beta):=20simplify=20install=20steps?= =?UTF-8?q?=20=E2=80=94=20no=20shell=20vars,=20no=20fresh/upgrade=20split?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Drop $WSAVAIL_DIR and $NODE_TAG. Operators just cd into their existing checkout and run the commands as-is. config.py step is now idempotent: keep existing, otherwise copy from sample. No verb branching between "fresh install" and "upgrade". --- BETA.md | 76 +++++++++++++++------------------------------------------ 1 file changed, 20 insertions(+), 56 deletions(-) diff --git a/BETA.md b/BETA.md index 4088bad..25ce5de 100644 --- a/BETA.md +++ b/BETA.md @@ -1,79 +1,45 @@ # ws-availability v1.1.0-beta.1 — Install -Beta release. API-compatible with v1.0.5. Default behavior unchanged unless you opt in via env vars. +Beta release. API-compatible with v1.0.5. ## Prerequisites -- Docker with the `docker-compose` v1.x (or `docker compose` v2) plugin. -- Running WFCatalog MongoDB ≥ 4.2 reachable from the host. +- Docker with `docker-compose` (v1) or `docker compose` (v2). +- WFCatalog MongoDB ≥ 4.2 reachable from the host. - Port 9001 free on the host. -- ~2 GB RAM. ## Install -Set two shell variables once. Replace `` with a short tag (`noa`, `resif`, `orfeus`, …). +`cd` into your `ws-availability` checkout (or `git clone https://github.com/EIDA/ws-availability.git` if you don't have one yet), then: -```bash -export WSAVAIL_DIR=/path/to/your/ws-availability/checkout # adjust -export NODE_TAG= # adjust -``` - -1. Back up. - - ```bash - cd "$WSAVAIL_DIR" - cp config.py "$HOME/config.py.pre-1.1.0-beta.bak" 2>/dev/null || true - crontab -l > "$HOME/crontab.pre-1.1.0-beta.bak" 2>/dev/null || true - git rev-parse HEAD > "$HOME/ws-availability.pre-1.1.0-beta.commit" 2>/dev/null || true - ``` - -2. Check out the beta. +1. Check out the beta. ```bash git fetch --tags origin git checkout v1.1.0-beta.1 ``` -3. Set the per-node Sentry tag. - - ```bash - echo "SENTRY_ENVIRONMENT=${NODE_TAG}_production" > .env - ``` - -4. If this is a first install, copy and edit `config.py`. (Skip on upgrade — your existing `config.py` is kept.) - - ```bash - cp config.py.sample config.py - $EDITOR config.py - ``` - -5. Build images. +2. `config.py` — keep your existing one if you already have it; otherwise copy the sample and edit: ```bash - docker-compose build api cacher + [ -f config.py ] || cp config.py.sample config.py + $EDITOR config.py # set MONGODB_*, FDSNWS_STATION_URL, SENTRY_DSN ``` -6. Replace the API container. +3. Set your node's Sentry tag (replace `noa` with your node short name): ```bash - docker-compose up -d --no-deps --build api + echo "SENTRY_ENVIRONMENT=noa_production" > .env ``` -7. Replace the cacher container. +4. Build and start. ```bash - docker-compose up -d --no-deps --build cacher + docker-compose build + docker-compose up -d ``` - Wait for the cacher startup tasks to finish: - - ```bash - docker logs -f fdsnws-availability-cacher 2>&1 | grep --line-buffered -E "Scheduler started|ERROR|Traceback" - ``` - - Stop tailing (`Ctrl-C`) once you see `Scheduler started`. - -8. If your node had a host cron triggering `views/main.js`, remove it. It is now redundant. +5. If your node had a host cron triggering `views/main.js`, remove it — it's now redundant. ```bash crontab -l | grep -v "ws-availability.*views.*main.js" | crontab - @@ -81,30 +47,28 @@ export NODE_TAG= # adjust ## Verify -Replace `` and `` with one of your live stations. +Replace `` and `` with one of your live stations. ```bash curl -s http://127.0.0.1:9001/version # expected: 1.1.0-beta.1 curl -s -o /dev/null -w "%{http_code}\n" \ - "http://127.0.0.1:9001/extent?net=&sta=&start=2024-01-01&end=2024-01-02" + "http://127.0.0.1:9001/extent?net=&sta=&start=2024-01-01&end=2024-01-02" # expected: 200 -curl -s -o /dev/null -w "%{http_code}\n" "http://127.0.0.1:9001/extent?network=" +curl -s -o /dev/null -w "%{http_code}\n" "http://127.0.0.1:9001/extent?network=" # expected: 413 docker exec fdsnws-availability-api env | grep SENTRY_ENVIRONMENT -# expected: SENTRY_ENVIRONMENT=_production +# expected: SENTRY_ENVIRONMENT=noa_production ``` ## Rollback ```bash -cd "$WSAVAIL_DIR" git checkout v1.0.5 rm -f .env -docker-compose build api cacher -docker-compose up -d --no-deps api cacher -crontab "$HOME/crontab.pre-1.1.0-beta.bak" +docker-compose build +docker-compose up -d ``` From 1a19673396a861ebdbf76b0ae804eae01ce87bc6 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Tue, 26 May 2026 13:55:23 +0300 Subject: [PATCH 31/50] config: make SENTRY_ENVIRONMENT a config.py value, drop the .env split Operators set everything in one place (config.py) again. Previously SENTRY_ENVIRONMENT was plumbed through docker-compose.yml from a .env file, which split configuration across two files and risked the compose default (local_development) silently overriding a value set elsewhere. Changes: - docker-compose.yml: remove the SENTRY_ENVIRONMENT env line from both services so Compose no longer injects it. config.py is now the sole source (the code's os.environ fallback stays as a harmless option). - config.py.sample: SENTRY_ENVIRONMENT is now a plain, must-edit value with a loud placeholder "{{node}}_production" and a REQUIRED banner, so an operator who forgets gets an obviously-broken tag in Sentry instead of silently sharing "local_development" with other nodes. - BETA.md: drop the `echo > .env` step; instead set SENTRY_ENVIRONMENT in config.py next to SENTRY_DSN. Verify step reads it back via Config rather than the container env. Rollback no longer rm's .env. The application code (start.py, apps/sentry.py) is unchanged: its resolution order Config -> os.environ -> "local_development" already makes Config authoritative now that Compose stops injecting the var. --- BETA.md | 24 ++++++++++++------------ config.py.sample | 15 ++++++++++----- docker-compose.yml | 6 ------ 3 files changed, 22 insertions(+), 23 deletions(-) diff --git a/BETA.md b/BETA.md index 25ce5de..12f7589 100644 --- a/BETA.md +++ b/BETA.md @@ -19,27 +19,28 @@ Beta release. API-compatible with v1.0.5. git checkout v1.1.0-beta.1 ``` -2. `config.py` — keep your existing one if you already have it; otherwise copy the sample and edit: +2. `config.py` — keep your existing one if you already have it; otherwise copy the sample: ```bash [ -f config.py ] || cp config.py.sample config.py - $EDITOR config.py # set MONGODB_*, FDSNWS_STATION_URL, SENTRY_DSN + $EDITOR config.py ``` -3. Set your node's Sentry tag (replace `noa` with your node short name): + Set these in `config.py`: + - `MONGODB_*`, `FDSNWS_STATION_URL`, `SENTRY_DSN` — as before. + - **`SENTRY_ENVIRONMENT`** — new in this version. Set it to a unique tag for your node, e.g. `"noa_production"`, `"resif_production"`. **Every node must have its own value.** If you are upgrading and your `config.py` has no such line, add one next to `SENTRY_DSN`: + ```python + SENTRY_ENVIRONMENT = "yournode_production" + ``` - ```bash - echo "SENTRY_ENVIRONMENT=noa_production" > .env - ``` - -4. Build and start. +3. Build and start. ```bash docker-compose build docker-compose up -d ``` -5. If your node had a host cron triggering `views/main.js`, remove it — it's now redundant. +4. If your node had a host cron triggering `views/main.js`, remove it — it's now redundant. ```bash crontab -l | grep -v "ws-availability.*views.*main.js" | crontab - @@ -60,15 +61,14 @@ curl -s -o /dev/null -w "%{http_code}\n" \ curl -s -o /dev/null -w "%{http_code}\n" "http://127.0.0.1:9001/extent?network=" # expected: 413 -docker exec fdsnws-availability-api env | grep SENTRY_ENVIRONMENT -# expected: SENTRY_ENVIRONMENT=noa_production +docker exec fdsnws-availability-api python -c "from config import Config; print(Config.SENTRY_ENVIRONMENT)" +# expected: your node tag, e.g. noa_production (NOT {{node}}_production — that means you forgot step 2) ``` ## Rollback ```bash git checkout v1.0.5 -rm -f .env docker-compose build docker-compose up -d ``` diff --git a/config.py.sample b/config.py.sample index a797ea9..166c092 100644 --- a/config.py.sample +++ b/config.py.sample @@ -65,11 +65,16 @@ class Config: SENTRY_TRACES_SAMPLE_RATE = float( os.environ.get("SENTRY_TRACES_SAMPLE_RATE") or "1.0" ) - # Per-node Sentry environment tag. - # Examples: noa_production, noa_staging, local_development. - # If unset, the app defaults to "local_development" so events from an - # unconfigured dev machine don't pollute the production stream. - SENTRY_ENVIRONMENT = os.environ.get("SENTRY_ENVIRONMENT") or "local_development" + # ===================================================================== + # >>> REQUIRED: SET THIS BEFORE DEPLOYING <<< + # Per-node Sentry environment tag — identifies THIS deployment in Sentry. + # Replace {{node}} with your node's short name, e.g.: + # "noa_production", "resif_production", "ingv_production" + # Every node MUST use a unique value. Do NOT leave the {{node}} + # placeholder and do NOT share one value across nodes — otherwise all + # their events collapse into the same bucket and become useless. + # ===================================================================== + SENTRY_ENVIRONMENT = "{{node}}_production" except NameError: print("Missing environment variables.") raise diff --git a/docker-compose.yml b/docker-compose.yml index c857013..f80bc5c 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -18,9 +18,6 @@ services: RUNMODE: production # Host Networking: Redis is on localhost CACHE_HOST: "127.0.0.1" - # Per-node Sentry environment tag (e.g. noa_production, noa_staging). - # Set SENTRY_ENVIRONMENT in the host shell before `docker compose up`. - SENTRY_ENVIRONMENT: ${SENTRY_ENVIRONMENT:-local_development} # Limit OpenBLAS threads (Fix for Cacher Crash) OPENBLAS_NUM_THREADS: 1 MKL_NUM_THREADS: 1 @@ -53,9 +50,6 @@ services: MONGODB_USR: ${MONGODB_USR:-wfrepouser} MONGODB_PWD: ${MONGODB_PWD:-2023wf} MONGODB_NAME: ${MONGODB_NAME:-wfrepo} - # Per-node Sentry environment tag (e.g. noa_production, noa_staging). - # Set SENTRY_ENVIRONMENT in the host shell before `docker compose up`. - SENTRY_ENVIRONMENT: ${SENTRY_ENVIRONMENT:-local_development} FDSNWS_STATION_URL: "https://eida.gein.noa.gr/fdsnws/station/1/query" # Limit OpenBLAS threads to prevent "pthread_create failed" on restricted servers OPENBLAS_NUM_THREADS: 1 From f0d627bb93106bb1ba37513b742daa3870981430 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Tue, 26 May 2026 14:06:03 +0300 Subject: [PATCH 32/50] docs(beta): cover config.py upgrades from v1.0.3/v1.0.4, not just v1.0.5 Most EIDA nodes run v1.0.3 or v1.0.4, whose config.py predates some or all of the Sentry settings. The previous BETA.md only told operators to add SENTRY_ENVIRONMENT, which is correct for v1.0.4/v1.0.5 but leaves a v1.0.3 node missing SENTRY_DSN and SENTRY_TRACES_SAMPLE_RATE too. Rewrite step 2 to branch by source version: - from v1.0.5/v1.0.4: add SENTRY_ENVIRONMENT only - from v1.0.3 or earlier: add all three SENTRY_* lines (with the exact os.environ.get(...) snippets to paste into the try: block) - fresh install: all three already present, just replace the placeholder Confirmed by diffing config.py.sample keys across tags: the only config delta from v1.0.3 -> beta is the three Sentry keys; MONGODB_*, CACHE_*, and FDSNWS_STATION_URL are unchanged. Add a copy-paste diff one-liner so an operator can list exactly which keys their config.py is missing versus the shipped sample. --- BETA.md | 28 +++++++++++++++++++++++++--- 1 file changed, 25 insertions(+), 3 deletions(-) diff --git a/BETA.md b/BETA.md index 12f7589..d33732a 100644 --- a/BETA.md +++ b/BETA.md @@ -26,13 +26,35 @@ Beta release. API-compatible with v1.0.5. $EDITOR config.py ``` - Set these in `config.py`: - - `MONGODB_*`, `FDSNWS_STATION_URL`, `SENTRY_DSN` — as before. - - **`SENTRY_ENVIRONMENT`** — new in this version. Set it to a unique tag for your node, e.g. `"noa_production"`, `"resif_production"`. **Every node must have its own value.** If you are upgrading and your `config.py` has no such line, add one next to `SENTRY_DSN`: + `MONGODB_*`, `CACHE_*`, and `FDSNWS_STATION_URL` are unchanged since v1.0.3 — keep your existing values. + + **What you must add depends on the version you're upgrading from.** Add the missing lines inside the `try:` block of `config.py` (next to the other `os.environ.get(...)` lines): + + - **Upgrading from v1.0.5 or v1.0.4** — add one line: + ```python SENTRY_ENVIRONMENT = "yournode_production" ``` + - **Upgrading from v1.0.3 (or earlier)** — your `config.py` predates Sentry entirely. Add all three: + + ```python + SENTRY_DSN = os.environ.get("SENTRY_DSN") or "" # paste your Sentry DSN, or leave "" to disable Sentry + SENTRY_TRACES_SAMPLE_RATE = float(os.environ.get("SENTRY_TRACES_SAMPLE_RATE") or "1.0") + SENTRY_ENVIRONMENT = "yournode_production" + ``` + + - **Fresh install (copied from `config.py.sample`)** — all three are already present; just replace the `{{node}}_production` placeholder. + + **`SENTRY_ENVIRONMENT` is mandatory and must be unique per node** (e.g. `noa_production`, `resif_production`, `ingv_production`). It is what separates your events from other nodes' in Sentry. Do not leave it as `{{node}}_production` and do not reuse another node's value. + + > To see exactly what your `config.py` is missing, diff it against the shipped sample: + > ```bash + > diff <(grep -oE '^[[:space:]]*[A-Z_]+ =' config.py | tr -d ' =' | sort -u) \ + > <(grep -oE '^[[:space:]]*[A-Z_]+ =' config.py.sample | tr -d ' =' | sort -u) + > ``` + > Lines prefixed `>` are keys present in the sample but missing from your `config.py`. + 3. Build and start. ```bash From aac3887791ab037099c1646c321850ddb694e3ef Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Tue, 26 May 2026 14:50:46 +0300 Subject: [PATCH 33/50] docs: rewrite README as an accurate project reference The README had drifted from the codebase: it referenced `pip install -r requirements.txt` (the project uses uv), a non-existent `tests/performance/` directory, `unittest discover` (now pytest), had duplicated `docker start` lines, and stale "after upgrading to v1.0.5" phrasing. Rewrite into a clean reference (418 -> 156 lines): - Architecture table of the four components + the deployment diagram. - Endpoints table (/query, /extent, /version, /application.wadl, /). - Full configuration reference: config.py keys plus the env-var-only settings (MAX_DATA_ROWS, MAX_STREAMS, FANOUT_*). - Deployment via docker-compose + Apache reverse-proxy snippet. - Materialized view: initial build, daily refresh, the recommended compound index. - Operations: the in-app APScheduler jobs (03:00 inventory, 06:00 view update with the 4-day reprocessing window), misfire behaviour. - Performance: workers, maxPoolSize, opt-in fan-out, thread limits. - Development with uv; tests with pytest. - Points beta testers to BETA.md at the top. --- README.md | 573 +++++++++++++++--------------------------------------- 1 file changed, 156 insertions(+), 417 deletions(-) diff --git a/README.md b/README.md index ec78f9d..5179e00 100644 --- a/README.md +++ b/README.md @@ -1,417 +1,156 @@ -# FDSNWS-Availability Deployment - -## Overview - -- WFCatalog DB (gray) - database used by the WFCatalog collector and API. -- FDSNWS-Availability API (blue) - Flask-based FDSNWS-Availability implementation. -- FDSNWS-Availability Cache (green) - Redis-based cache to store restriction information. -- FDSNWS-Availability Cacher (orange) - Python-based container to harvest and store restriction information. -- FDSNWS-Availability Update (purple) - JS script to fill the `availability` materialized view using WFCatalog `daily_streams` and `c_segments` collections. - -![FDSNWS-Availability deployment diagram](deployment.png) - -Following implementation requires MongoDB v4.2 or higher. - -## Deployment - -1. Clone the [https://github.com/EIDA/ws-availability] repository and go to its root -1. Copy `config.py.sample` to `config.py` and adjust it as needed (please notice there are two sections - `RUNMODE == "production"` and `RUNMODE == "test"`; for Docker deployment use the `production` section): - - ```bash - # WFCatalog MongoDB - MONGODB_HOST = "localhost" #MongoDB host - MONGODB_PORT = 27017 #MongoDB port - MONGODB_USR = "" #MongoDB user - MONGODB_PWD = "" #MongoDB password - MONGODB_NAME = "wfrepo" #MongoDB database name - FDSNWS_STATION_URL = "https://orfeus-eu.org/fdsnws/station/1/query" #FDSNWS-Station endpoint to harvest restriction information from - CACHE_HOST = "localhost" #Cache host - CACHE_PORT = 6379 #Cache port - CACHE_INVENTORY_KEY = "inventory" #Cache key for restriction information - CACHE_INVENTORY_PERIOD = 0 #Cache invalidation period for `inventory` key; 0 = never invalidate - CACHE_RESP_PERIOD = 1200 #Cache invalidation period for API response - ``` - -1. Build the containers: - - ```bash - docker-compose -p 'fdsnws-availability' up -d --no-deps --build - ``` - - When the Docker stack is deployed, you will see 3 containers running: - - ```bash - $ docker ps - CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES - 4e3dace01fb0 fdsnws-availability_api "/bin/bash -c 'gunic…" 10 seconds ago Up 5 seconds 0.0.0.0:9001->9001/tcp fdsnws-availability-api - 3c91e0d1c5e6 fdsnws-availability_cacher "/bin/bash -c 'pytho…" 10 seconds ago Up 5 seconds 0.0.0.0:11211->11211/tcp fdsnws-availability-cacher - d983e64d64a8 redis:7.0-alpine "docker-entrypoint.s…" 10 seconds ago Up 5 seconds 0.0.0.0:6379->6379/tcp fdsnws-availability-cache - ``` - - You can follow the `fdsnws-availability-cacher` container to see the status of restriction information harvesting: - - ```bash - $ docker logs --follow fdsnws-availability-cacher - [2023-01-11 09:47:38 +0000] [0] [INFO] Getting inventory from FDSNWS-Station... - [2023-01-11 09:47:39 +0000] [0] [INFO] Harvesting 33 from https://orfeus-eu.org/fdsnws/station/1/query?level=network: 2M,3T,6A... - #... - [2023-02-15 08:31:56 +0000] [0] [INFO] Completed caching inventory from FDSNWS-Station - ``` - - Once `fdsnws-availability-cacher` is completed, it will go down. Harvested information is stored in the Redis DB served by `fdsnws-availability-cache` container. To rebuild the cache, simply restart the container using: - - ```bash - docker start fdsnws-availability-cacher - ``` - - ```bash - docker start fdsnws-availability-cacher - ``` - - With the current configuration, the `fdsnws-availability-cacher` container runs a continuous scheduler (`apps/scheduler.py`). This scheduler automatically handles cache rebuilding every day at 3:00 AM. It will harvest and overwrite the restricted information stored in the Redis instance without requiring host-level cronjobs. - -1. Materialized view - 1. Initial build - - When the stack is initially deployed, the materialized view is not yet in place. To build it, issue the following command: - - ```bash - # Script started on 2023-02-24 - $ mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo --eval "daysBack=365" views/main.js - Processing WFCatalog entries using networks: '^.*$', stations: '^.*$', start: '2022-03-24', end: '2023-03-24' completed! - ``` - - It will go throught the documents in `daily_streams` and `c_segments` from last year, extract availability information and store it in the `availability` materialized view. - - 1. Daily appension - - To automate availability information appension, the `fdsnws-availability-cacher` container automatically executes the update logic every day at 6:00 AM. - It will go through the documents in `daily_streams` and `c_segments` from the last day, extract availability information, and append it to the `availability` materialized view. - Because this runs via the container's scheduler, no host-level interference is required. - - 1. Back-processing - - Processing can be also executed on a predefined subset of data using `networks`, `stations`, `start`, and `end` parameters by executing the updater logic directly within the python environment of the `cacher` container, bypassing the scheduler triggers. - - 1. Indexes - - It is highly suggested to create at least following index in the `availability` materialized view. First, login to your MongoDB instance using `mongosh` and then execute following commands: - - ```bash - use wfrepo; - db.availability.createIndex({ net: 1, sta: 1, loc: 1, cha: 1, ts: 1, te: 1 }) - ``` - -1. Validation - - Now it is time to check if everything is running (remember to change the `net` query parameter). API is exposed by default on port `9001`, let's try to get the landing page: - - ```bash - $ curl "127.0.0.1:9001" - - - - - - FDSNWS-Availability - - -

FDSNWS Availability Web Service

-

- The availability web service returns detailed time span information about - available time series data. Please refer to - http://www.fdsn.org/webservice - for a complete service description. -

- -

Available URLs

- - - ``` - - Get request to the `/extent` method: - - ```bash - $ curl "127.0.0.1:9001/extent?net=NA&start=2023-02-01" - #Network Station Location Channel Quality SampleRate Earliest Latest Updated TimeSpans Restriction - NA SABA BHE D 40.0 2023-02-01T00:00:00.000000Z 2023-02-14T00:00:00.000000Z 2023-02-14T07:41:14Z 1 OPEN - NA SABA BHN D 40.0 2023-02-01T00:00:00.000000Z 2023-02-14T00:00:00.000000Z 2023-02-14T07:42:07Z 1 OPEN - NA SABA BHZ D 40.0 2023-02-01T00:00:00.000000Z 2023-02-14T00:00:00.000000Z 2023-02-14T07:41:41Z 1 OPEN - # ... - ``` - - Get request to the `/query` method: - - ```bash - $ curl "127.0.0.1:9001/query?net=NA&start=2023-02-01" - #Network Station Location Channel Quality SampleRate Earliest Latest - NA SABA BHE D 40.0 2023-02-01T00:00:00.000000Z 2023-02-02T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-02T00:00:00.000000Z 2023-02-03T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-03T00:00:00.000000Z 2023-02-04T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-04T00:00:00.000000Z 2023-02-05T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-05T00:00:00.000000Z 2023-02-06T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-06T00:00:00.000000Z 2023-02-07T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-07T00:00:00.000000Z 2023-02-08T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-08T00:00:00.000000Z 2023-02-09T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-09T00:00:00.000000Z 2023-02-10T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-10T00:00:00.000000Z 2023-02-11T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-11T00:00:00.000000Z 2023-02-12T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-12T00:00:00.000000Z 2023-02-13T00:00:00.000000Z - NA SABA BHE D 40.0 2023-02-13T00:00:00.000000Z 2023-02-14T00:00:00.000000Z - ``` - -1. Reverse proxy example config - - An example of Apache reverse proxy config: - - ```bash - # FDSNWS-Availability (Docker) - - # in order to omit CORS error - Header add Access-Control-Allow-Origin "*" - - ProxyPass /fdsnws/availability/1 :9001 timeout=600 - ProxyPassReverse /fdsnws/availability/1 :9001 timeout=600 - ``` - -## Performance Tuning - -### Gunicorn Workers Configuration - -The number of Gunicorn workers directly affects how many concurrent requests your service can handle. The default configuration uses **1 worker** for maximum stability on resource-constrained servers. - -#### Current Configuration (docker-compose.yml) -```yaml -command: gunicorn --bind 0.0.0.0:9001 --workers 1 start:app -``` - -#### Adjusting Worker Count - -**For servers with limited resources or thread creation issues:** -```yaml -# Minimum configuration (most stable) -command: gunicorn --bind 0.0.0.0:9001 --workers 1 --timeout 600 start:app -``` - -**For servers with moderate resources:** -```yaml -# 2-3 workers (recommended for most deployments) -command: gunicorn --bind 0.0.0.0:9001 --workers 2 --timeout 600 start:app -``` - -**For high-performance servers:** -```yaml -# Formula: (2 × CPU cores) + 1 -# Example for 4-core server: --workers 9 -command: gunicorn --bind 0.0.0.0:9001 --workers 4 --timeout 600 start:app -``` - -#### Important Notes - -1. **Each worker is a separate process** with its own memory footprint -2. **More workers ≠ always better** - too many workers can exhaust system resources -3. **Monitor for errors** after increasing workers: - ```bash - docker logs -f fdsnws-availability-api - # Watch for "pthread_create failed" or similar errors - ``` - -4. **Resource usage check:** - ```bash - docker stats fdsnws-availability-api - # If CPU < 80% and memory available, you can add more workers - ``` - -### MongoDB Connection Pool - -The MongoDB connection pool is configured in `apps/wfcatalog_client.py`: - -```python -maxPoolSize=1 # Connections per worker -``` - -#### How It Works - -- **Each Gunicorn worker** has its own MongoDB client -- **Total connections** = `workers × maxPoolSize` -- **Example:** 2 workers × 1 pool = 2 total MongoDB connections - -#### When to Adjust - -**Keep `maxPoolSize=1` if:** -- ✅ Using sync workers (default Gunicorn configuration) -- ✅ Each worker handles one request at a time -- ✅ Server has resource constraints - -**Increase `maxPoolSize` only if:** -- Using async workers (gevent/eventlet) -- Using threading within workers -- MongoDB is a bottleneck (check with profiling) - -#### Example Configurations - -| Workers | maxPoolSize | Total Connections | Use Case | -|---------|-------------|-------------------|----------| -| 1 | 1 | 1 | Minimal (default) | -| 2 | 1 | 2 | Recommended | -| 4 | 1 | 4 | High performance | -| 2 | 5 | 10 | Async workers | - -### Parallel MongoDB Fan-out (opt-in) - -For long-time-range requests, `mongo_request` can split the `[starttime, endtime)` range into day-aligned windows and run them as concurrent MongoDB cursors on a thread pool. The `availability` collection stores one document per (channel × quality × srate × day), so each shard is an index range scan with no overlap. Behind the feature flag, off by default. - -| Env var | Default | Meaning | -|---------|---------|---------| -| `FANOUT_ENABLED` | `false` | Master switch. When `false`, the request path is byte-identical to the legacy single-cursor flow. | -| `FANOUT_MAX_WORKERS` | `4` | Max parallel shards per request. Also bumps the MongoDB `maxPoolSize` for the worker when fan-out is on, so the pool can serve every shard. | -| `FANOUT_MIN_DAYS` | `7` | Skip fan-out when the request range is shorter than this — the thread-pool overhead would dominate. | -| `FANOUT_WINDOW_DAYS` | `30` | Target size of each shard. A 90-day request becomes ≈3 shards at the default. | - -#### When to enable - -- Long-range queries (months/years) for a small NSLC selection are the sweet spot. -- Verify `db.availability.serverStatus().connections` after enabling — peak should be `gunicorn_workers × FANOUT_MAX_WORKERS`. -- Compare Sentry traces with the flag on vs off; each shard is reported as a `db.mongo.shard` child span with `ts_start` / `ts_end` tags. - -#### When to leave off - -- Short-range queries (< `FANOUT_MIN_DAYS`) — they take the legacy single-cursor path even with the flag on, so leaving the flag off costs nothing. -- If your MongoDB has a tight `maxConnections` budget that `gunicorn_workers × FANOUT_MAX_WORKERS` would exceed. - -### Thread Limiting (Important!) - -The configuration includes thread limits to prevent `pthread_create failed` errors on restricted servers: - -```yaml -environment: - OPENBLAS_NUM_THREADS: 1 - MKL_NUM_THREADS: 1 - NUMEXPR_NUM_THREADS: 1 - OMP_NUM_THREADS: 1 -``` - -**Do not remove these** unless you're certain your server can handle multiple threads per process. These prevent NumPy/ObsPy from spawning excessive threads. - -### Troubleshooting - -**Problem:** Service crashes with "pthread_create failed" -- **Solution:** Reduce workers to 1, keep thread limits in place - -**Problem:** Slow response times under load -- **Solution:** Increase workers (if resources allow), monitor with `docker stats` - -**Problem:** High memory usage -- **Solution:** Reduce workers, check for memory leaks with profiling - -**Problem:** MongoDB connection errors -- **Solution:** Check total connections (workers × maxPoolSize) against MongoDB limits - -### Performance Monitoring - -See `tests/performance/` for profiling and benchmarking tools: - -```bash -# Quick performance test -bash tests/performance/quick_test.sh - -# Detailed profiling -python tests/performance/profiler.py - -# Load testing -locust -f tests/performance/locustfile.py --host=http://localhost:9001 -``` - -For more details, see [Performance Analysis Plan](tests/performance/README.md). - -## Troubleshooting - -If your webservice is not working (e.g., after upgrading to v1.0.5), it is likely due to a configuration problem. Follow these steps to diagnose the issue: - -1. **Check Docker Logs** - Inspect the API container logs for any runtime errors or connection failures: - - ```bash - docker logs fdsnws-availability-api - ``` - -2. **Verify Configuration** - Ensure that your `config.py` includes all required fields. Compare your `config.py` with the provided `config.py.sample` to ensure no newly introduced configuration variables are missing. - -3. **Check Database Access** - Verify that your MongoDB and Redis connection parameters in `config.py` are correct and that those services are fully operational. - -## Running in development environment - -1. Go to the root directory. -1. Copy `config.py.sample` to `config.py` and adjust it as needed. -1. Create the virtual environment: - - ```bash - python3 -m venv env - ``` - -1. Activate the virtual environment: - - ```bash - source env/bin/activate - ``` - -1. Install the dependencies: - - ```bash - pip install -r requirements.txt - ``` - -1. Create Redis instance (mandatory for WFCatalog-based deployment): - - ```bash - docker run -p 6379:6379 --name cache -d redis:7.0-alpine redis-server --save 20 1 --loglevel warning - ``` - -1. Build the cache: - - ```bash - python3 cache.py - ``` - -1. Now you can either: - 1. Run it: - - ```bash - RUNMODE=test FLASK_APP=start.py flask run - - # Or with gunicorn: - RUNMODE=test gunicorn --workers 2 --timeout 60 --bind 0.0.0.0:9001 start:app - ``` - - 1. Debug it in VS Code (F5) after selecting "Launch (Flask)" config. - -## RUNMODE builtin values - -- `production` -- `test` - -## Tests - -Tests can be executed from the respository root using following command: - -```bash -PYTHONPATH=./apps/ python3 -m unittest discover tests/ -``` - -## Ideas for improvements - -1. Move restriction information from Redis cache directly to the `db.availability` materialized view. This would imply modifying the `views/main.js` script with code harvesting this information directly from the FDSNWS-Station instance. -1. Modify underlying RESIF code from logic based on list of arrays to list of objects/dicts which is native MongoDB response to prevent the object/dict to array casting. - -## References - -This repository has been forked from [gitlab.com/resif/ws-availability](https://gitlab.com/resif/ws-availability), special thanks to our colleagues at RESIF for sharing their implementation of the FDSNWS-Availability web service. 💐 +# FDSNWS-Availability + +A Flask implementation of the [FDSN Availability web service 1.0](http://www.fdsn.org/webservices/fdsnws-availability-1.0.pdf). It reports the time spans for which time-series data exist, sourced from a WFCatalog MongoDB. + +> **Beta testers:** if you are installing or upgrading to the **v1.1.0-beta.1** release, follow [`BETA.md`](BETA.md) — it has the exact step-by-step commands. This README is the general reference. + +## Architecture + +| Component | Role | +|-----------|------| +| **API** (`fdsnws-availability-api`) | Flask + gunicorn service answering `/query` and `/extent`. | +| **Cache** (`fdsnws-availability-cache`) | Redis — stores the restriction inventory and cached responses. | +| **Cacher** (`fdsnws-availability-cacher`) | Python container running an in-app scheduler (`apps/scheduler.py`) that harvests restriction info and refreshes the materialized view. | +| **WFCatalog MongoDB** | External — holds `daily_streams` / `c_segments`, and the `availability` materialized view the API reads. Requires MongoDB ≥ 4.2. | + +![FDSNWS-Availability deployment diagram](deployment.png) + +## Endpoints + +API listens on port `9001` by default. + +| Path | Description | +|------|-------------| +| `/query` | Time spans per channel (one row per contiguous segment). GET and POST. | +| `/extent` | One row per channel: earliest/latest + timespan count. GET and POST. | +| `/version` | Service version string. | +| `/application.wadl` | WADL service description. | +| `/` | HTML landing page listing the URLs above. | + +```bash +curl "127.0.0.1:9001/extent?net=NA&start=2023-02-01" +#Network Station Location Channel Quality SampleRate Earliest Latest Updated TimeSpans Restriction +NA SABA BHZ D 40.0 2023-02-01T00:00:00.000000Z 2023-02-14T00:00:00.000000Z 2023-02-14T07:41:41Z 1 OPEN +``` + +## Configuration + +Copy `config.py.sample` to `config.py` and edit the `RUNMODE == "production"` block. `config.py` is gitignored — your copy is never overwritten by upgrades. + +| Key | Description | +|-----|-------------| +| `MONGODB_HOST` / `MONGODB_PORT` | WFCatalog MongoDB location. | +| `MONGODB_USR` / `MONGODB_PWD` | MongoDB credentials (leave empty if no auth). | +| `MONGODB_NAME` | Database name; also used as `authSource`. Default `wfrepo`. | +| `FDSNWS_STATION_URL` | FDSNWS-Station endpoint the cacher harvests restriction info from. | +| `CACHE_HOST` / `CACHE_PORT` | Redis location. | +| `CACHE_INVENTORY_KEY` | Redis key for the restriction inventory. Default `inventory`. | +| `CACHE_INVENTORY_PERIOD` | Inventory cache TTL; `0` = never expire. | +| `CACHE_RESP_PERIOD` | Response cache TTL in seconds. Default `1200`. | +| `SENTRY_DSN` | Sentry DSN. Empty disables Sentry. | +| `SENTRY_TRACES_SAMPLE_RATE` | Trace sample rate `0.0`–`1.0`. | +| `SENTRY_ENVIRONMENT` | **Per-node tag** (e.g. `noa_production`). Must be unique per deployment so Sentry can tell nodes apart. | + +The following are optional, read from environment variables with safe defaults (see `apps/settings.py`): + +| Env var | Default | Description | +|---------|---------|-------------| +| `MAX_DATA_ROWS` | `2500000` | Row cap; a request exceeding it returns HTTP 413. | +| `MAX_STREAMS` | `2000` | Stream-count cap for a single request. | +| `FANOUT_ENABLED` | `false` | Enable parallel time-window MongoDB queries (see [Performance](#performance)). | +| `FANOUT_MAX_WORKERS` | `4` | Max parallel shards per request when fan-out is on. | +| `FANOUT_MIN_DAYS` | `7` | Below this range size, fan-out is skipped. | +| `FANOUT_WINDOW_DAYS` | `30` | Target shard size in days. | + +## Deployment + +1. Clone and configure: + + ```bash + git clone https://github.com/EIDA/ws-availability.git + cd ws-availability + cp config.py.sample config.py + $EDITOR config.py + ``` + +2. Build and start: + + ```bash + docker-compose up -d --build + ``` + + Three containers come up: `fdsnws-availability-api`, `fdsnws-availability-cacher`, `fdsnws-availability-cache`. + +3. Reverse proxy (Apache example): + + ```apache + + Header add Access-Control-Allow-Origin "*" + + ProxyPass /fdsnws/availability/1 http://127.0.0.1:9001 timeout=600 + ProxyPassReverse /fdsnws/availability/1 http://127.0.0.1:9001 timeout=600 + ``` + +## The materialized view + +The API reads the `availability` collection, built from WFCatalog's `daily_streams` and `c_segments`. + +- **Initial build** (one-time, for a fresh database): + + ```bash + mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo --eval "daysBack=365" views/main.js + ``` + +- **Daily refresh** — the cacher's in-app scheduler runs the update automatically (see [Operations](#operations)). No host cron required. + +- **Index** (strongly recommended — without it every query is a collection scan): + + ```javascript + use wfrepo + db.availability.createIndex({ net: 1, sta: 1, loc: 1, cha: 1, ts: 1, te: 1 }) + ``` + +## Operations + +The cacher runs an [APScheduler](https://apscheduler.readthedocs.io/) loop (`apps/scheduler.py`) — no host-level cron is needed: + +| Time (UTC) | Job | Action | +|------------|-----|--------| +| 03:00 daily | `rebuild-inventory-cache` | Harvest restriction inventory from FDSNWS-Station into Redis. | +| 06:00 daily | `update-availability-view` | Re-process the last 4 days of `daily_streams`/`c_segments` into the `availability` view. | +| on startup | both | Run once when the container starts, so a restart leaves data fresh. | + +Both jobs report to Sentry Crons (when `SENTRY_DSN` is set) with `misfire_grace_time=300`, so a brief delay doesn't skip a run. The 4-day reprocessing window means up to 4 consecutive missed days self-heal on the next run. + +## Performance + +- **Gunicorn workers** — default `--workers 1` (most stable on constrained hosts). Raise in `docker-compose.yml` if you have CPU/RAM headroom; watch `docker logs` for `pthread_create failed`. +- **MongoDB pool** — `maxPoolSize=1` per worker by default (`apps/wfcatalog_client.py`). Total connections = `workers × maxPoolSize`. +- **Parallel fan-out** (opt-in) — set `FANOUT_ENABLED=true` to split long-range queries into day-aligned windows run as concurrent cursors. Best for multi-month queries over a small NSLC selection. When on, peak Mongo connections rise to `workers × FANOUT_MAX_WORKERS`. Off by default; behavior is byte-identical to the single-cursor path when disabled. +- **Thread limits** — `OPENBLAS_NUM_THREADS=1` etc. in `docker-compose.yml` prevent NumPy/ObsPy thread storms. Keep them unless you know your host can handle more. + +## Development + +Requires Python ≥ 3.13 and [uv](https://docs.astral.sh/uv/). + +```bash +cp config.py.sample config.py # edit for RUNMODE=test +uv sync # create venv + install deps from uv.lock + +# Redis is required: +docker run -p 6379:6379 --name cache -d redis:7.0-alpine redis-server --save 20 1 --loglevel warning +uv run python cache.py # build the restriction inventory + +# Run the API: +RUNMODE=test uv run gunicorn --workers 2 --timeout 60 --bind 0.0.0.0:9001 start:app +``` + +## Tests + +```bash +uv run pytest tests/ +``` + +## References + +Forked from [gitlab.com/resif/ws-availability](https://gitlab.com/resif/ws-availability) — thanks to our colleagues at RESIF for sharing their FDSNWS-Availability implementation. 💐 From b2eb5f23b64dcb7af080fcb29e919dad3474bdce Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Tue, 26 May 2026 21:24:45 +0300 Subject: [PATCH 34/50] =?UTF-8?q?docs:=20make=20README=20simple=20and=20us?= =?UTF-8?q?eful=20=E2=80=94=20lead=20with=20"Run=20it"?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Reorganize so the common case is front and center and one-time/greenfield setup is fenced off: - Open with a one-paragraph what-it-is + the three containers. - "Run it" section first: clone, config.py, docker-compose up. That's the whole install for a node with a populated WFCatalog. - Config reference trimmed to the keys operators actually set. - "What runs daily" summarizes the scheduler (03:00 inventory, 06:00 view update) in three lines. - "First-time database setup" (view build + index) is now a clearly fenced section that says "skip if you already run ws-availability". - Reverse proxy demoted to a short "Serving publicly" note (it's node infra, not an app install step). - Tuning (workers, caps, fan-out) condensed to three bullets. 156 -> ~95 lines. --- README.md | 161 ++++++++++++++++++------------------------------------ 1 file changed, 54 insertions(+), 107 deletions(-) diff --git a/README.md b/README.md index 5179e00..70e958d 100644 --- a/README.md +++ b/README.md @@ -1,31 +1,31 @@ # FDSNWS-Availability -A Flask implementation of the [FDSN Availability web service 1.0](http://www.fdsn.org/webservices/fdsnws-availability-1.0.pdf). It reports the time spans for which time-series data exist, sourced from a WFCatalog MongoDB. +A Flask implementation of the [FDSN Availability web service 1.0](http://www.fdsn.org/webservices/fdsnws-availability-1.0.pdf). It reports the time spans for which time-series data exist, served from a WFCatalog MongoDB. -> **Beta testers:** if you are installing or upgrading to the **v1.1.0-beta.1** release, follow [`BETA.md`](BETA.md) — it has the exact step-by-step commands. This README is the general reference. +It runs as three Docker containers: the **API** (Flask + gunicorn, port 9001), a **Redis** cache, and a **cacher** that keeps the restriction inventory and the `availability` view up to date on a built-in daily schedule. -## Architecture +> **Installing or upgrading to v1.1.0-beta.1?** Follow [`BETA.md`](BETA.md) for the exact commands. -| Component | Role | -|-----------|------| -| **API** (`fdsnws-availability-api`) | Flask + gunicorn service answering `/query` and `/extent`. | -| **Cache** (`fdsnws-availability-cache`) | Redis — stores the restriction inventory and cached responses. | -| **Cacher** (`fdsnws-availability-cacher`) | Python container running an in-app scheduler (`apps/scheduler.py`) that harvests restriction info and refreshes the materialized view. | -| **WFCatalog MongoDB** | External — holds `daily_streams` / `c_segments`, and the `availability` materialized view the API reads. Requires MongoDB ≥ 4.2. | +## Run it -![FDSNWS-Availability deployment diagram](deployment.png) +```bash +git clone https://github.com/EIDA/ws-availability.git +cd ws-availability +cp config.py.sample config.py # edit MongoDB creds, FDSNWS_STATION_URL, SENTRY_ENVIRONMENT +docker-compose up -d --build +``` -## Endpoints +Check it: + +```bash +curl "127.0.0.1:9001/extent?net=NA&start=2023-02-01" +``` -API listens on port `9001` by default. +That's the whole install for a node that already has a populated WFCatalog. Requires MongoDB ≥ 4.2. -| Path | Description | -|------|-------------| -| `/query` | Time spans per channel (one row per contiguous segment). GET and POST. | -| `/extent` | One row per channel: earliest/latest + timespan count. GET and POST. | -| `/version` | Service version string. | -| `/application.wadl` | WADL service description. | -| `/` | HTML landing page listing the URLs above. | +## Endpoints + +API on port `9001`. `/query` (time spans per channel) and `/extent` (one row per channel) accept GET and POST. Also `/version`, `/application.wadl`, and `/` (landing page). ```bash curl "127.0.0.1:9001/extent?net=NA&start=2023-02-01" @@ -35,99 +35,54 @@ NA SABA BHZ D 40.0 2023-02-01T00:00:00.000000Z ## Configuration -Copy `config.py.sample` to `config.py` and edit the `RUNMODE == "production"` block. `config.py` is gitignored — your copy is never overwritten by upgrades. +Everything lives in `config.py` (copied from `config.py.sample`, gitignored so upgrades never touch it). Set these in the `RUNMODE == "production"` block: | Key | Description | |-----|-------------| -| `MONGODB_HOST` / `MONGODB_PORT` | WFCatalog MongoDB location. | -| `MONGODB_USR` / `MONGODB_PWD` | MongoDB credentials (leave empty if no auth). | -| `MONGODB_NAME` | Database name; also used as `authSource`. Default `wfrepo`. | -| `FDSNWS_STATION_URL` | FDSNWS-Station endpoint the cacher harvests restriction info from. | +| `MONGODB_HOST` / `PORT` / `USR` / `PWD` / `NAME` | WFCatalog MongoDB connection. | +| `FDSNWS_STATION_URL` | FDSNWS-Station endpoint to harvest restriction info from. | | `CACHE_HOST` / `CACHE_PORT` | Redis location. | -| `CACHE_INVENTORY_KEY` | Redis key for the restriction inventory. Default `inventory`. | -| `CACHE_INVENTORY_PERIOD` | Inventory cache TTL; `0` = never expire. | -| `CACHE_RESP_PERIOD` | Response cache TTL in seconds. Default `1200`. | -| `SENTRY_DSN` | Sentry DSN. Empty disables Sentry. | -| `SENTRY_TRACES_SAMPLE_RATE` | Trace sample rate `0.0`–`1.0`. | -| `SENTRY_ENVIRONMENT` | **Per-node tag** (e.g. `noa_production`). Must be unique per deployment so Sentry can tell nodes apart. | - -The following are optional, read from environment variables with safe defaults (see `apps/settings.py`): - -| Env var | Default | Description | -|---------|---------|-------------| -| `MAX_DATA_ROWS` | `2500000` | Row cap; a request exceeding it returns HTTP 413. | -| `MAX_STREAMS` | `2000` | Stream-count cap for a single request. | -| `FANOUT_ENABLED` | `false` | Enable parallel time-window MongoDB queries (see [Performance](#performance)). | -| `FANOUT_MAX_WORKERS` | `4` | Max parallel shards per request when fan-out is on. | -| `FANOUT_MIN_DAYS` | `7` | Below this range size, fan-out is skipped. | -| `FANOUT_WINDOW_DAYS` | `30` | Target shard size in days. | - -## Deployment - -1. Clone and configure: - - ```bash - git clone https://github.com/EIDA/ws-availability.git - cd ws-availability - cp config.py.sample config.py - $EDITOR config.py - ``` +| `CACHE_RESP_PERIOD` | Response cache TTL in seconds (default 1200). | +| `SENTRY_DSN` | Sentry DSN; empty disables Sentry. | +| `SENTRY_ENVIRONMENT` | **Unique per-node tag** (e.g. `noa_production`) so Sentry can tell deployments apart. | -2. Build and start: +## What runs daily - ```bash - docker-compose up -d --build - ``` +The cacher runs a built-in scheduler — no host cron needed: - Three containers come up: `fdsnws-availability-api`, `fdsnws-availability-cacher`, `fdsnws-availability-cache`. +- **03:00 UTC** — refresh the restriction inventory from FDSNWS-Station into Redis. +- **06:00 UTC** — update the `availability` view from the last 4 days of WFCatalog data. +- **On startup** — both run once, so a restart leaves data fresh. -3. Reverse proxy (Apache example): +## First-time database setup - ```apache - - Header add Access-Control-Allow-Origin "*" - - ProxyPass /fdsnws/availability/1 http://127.0.0.1:9001 timeout=600 - ProxyPassReverse /fdsnws/availability/1 http://127.0.0.1:9001 timeout=600 - ``` +*Skip this if you already run ws-availability — the view and index already exist.* -## The materialized view +For a brand-new WFCatalog database, build the materialized view once and add the index: -The API reads the `availability` collection, built from WFCatalog's `daily_streams` and `c_segments`. - -- **Initial build** (one-time, for a fresh database): - - ```bash - mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo --eval "daysBack=365" views/main.js - ``` - -- **Daily refresh** — the cacher's in-app scheduler runs the update automatically (see [Operations](#operations)). No host cron required. - -- **Index** (strongly recommended — without it every query is a collection scan): - - ```javascript - use wfrepo - db.availability.createIndex({ net: 1, sta: 1, loc: 1, cha: 1, ts: 1, te: 1 }) - ``` +```bash +# Build the availability view (adjust daysBack to how far back you want) +mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo --eval "daysBack=365" views/main.js -## Operations +# Index — without it, every query is a full collection scan +mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo --eval ' + db.availability.createIndex({ net: 1, sta: 1, loc: 1, cha: 1, ts: 1, te: 1 })' +``` -The cacher runs an [APScheduler](https://apscheduler.readthedocs.io/) loop (`apps/scheduler.py`) — no host-level cron is needed: +## Serving publicly -| Time (UTC) | Job | Action | -|------------|-----|--------| -| 03:00 daily | `rebuild-inventory-cache` | Harvest restriction inventory from FDSNWS-Station into Redis. | -| 06:00 daily | `update-availability-view` | Re-process the last 4 days of `daily_streams`/`c_segments` into the `availability` view. | -| on startup | both | Run once when the container starts, so a restart leaves data fresh. | +The API speaks plain HTTP on 9001. To serve it at the standard FDSN URL with HTTPS, put it behind your existing reverse proxy. Apache example: -Both jobs report to Sentry Crons (when `SENTRY_DSN` is set) with `misfire_grace_time=300`, so a brief delay doesn't skip a run. The 4-day reprocessing window means up to 4 consecutive missed days self-heal on the next run. +```apache +ProxyPass /fdsnws/availability/1 http://127.0.0.1:9001 timeout=600 +ProxyPassReverse /fdsnws/availability/1 http://127.0.0.1:9001 timeout=600 +``` -## Performance +## Tuning (optional) -- **Gunicorn workers** — default `--workers 1` (most stable on constrained hosts). Raise in `docker-compose.yml` if you have CPU/RAM headroom; watch `docker logs` for `pthread_create failed`. -- **MongoDB pool** — `maxPoolSize=1` per worker by default (`apps/wfcatalog_client.py`). Total connections = `workers × maxPoolSize`. -- **Parallel fan-out** (opt-in) — set `FANOUT_ENABLED=true` to split long-range queries into day-aligned windows run as concurrent cursors. Best for multi-month queries over a small NSLC selection. When on, peak Mongo connections rise to `workers × FANOUT_MAX_WORKERS`. Off by default; behavior is byte-identical to the single-cursor path when disabled. -- **Thread limits** — `OPENBLAS_NUM_THREADS=1` etc. in `docker-compose.yml` prevent NumPy/ObsPy thread storms. Keep them unless you know your host can handle more. +- **Workers** — default `--workers 1` in `docker-compose.yml`; raise if you have CPU/RAM headroom. +- **Row/stream caps** — `MAX_DATA_ROWS` (default 2.5M) and `MAX_STREAMS` (default 2000) env vars guard against oversized requests (HTTP 413). +- **Parallel fan-out** — set `FANOUT_ENABLED=true` to speed up long multi-month queries by running them as parallel time-window cursors. Off by default; identical results when off. ## Development @@ -135,21 +90,13 @@ Requires Python ≥ 3.13 and [uv](https://docs.astral.sh/uv/). ```bash cp config.py.sample config.py # edit for RUNMODE=test -uv sync # create venv + install deps from uv.lock - -# Redis is required: -docker run -p 6379:6379 --name cache -d redis:7.0-alpine redis-server --save 20 1 --loglevel warning +uv sync +docker run -p 6379:6379 -d redis:7.0-alpine # Redis is required uv run python cache.py # build the restriction inventory - -# Run the API: -RUNMODE=test uv run gunicorn --workers 2 --timeout 60 --bind 0.0.0.0:9001 start:app +RUNMODE=test uv run gunicorn --bind 0.0.0.0:9001 start:app ``` -## Tests - -```bash -uv run pytest tests/ -``` +Tests: `uv run pytest tests/` ## References From 714e3df03f1b08185a73243f4fd3c1a2e50b3f6d Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Tue, 26 May 2026 21:33:46 +0300 Subject: [PATCH 35/50] docs: add build/pull deployment options, move DB setup to the end - Deployment now offers two paths: Option A build locally (docker-compose up -d --build), Option B pull pre-built GHCR images via a docker-compose.override.yml. Operators choose based on whether they want to build or just download. - Move "First-time database setup" (materialized view + index) to the last content section, fenced as fresh-DB-only, linked from Deployment. - Reverse-proxy guidance stays as "Serving publicly" (it was in the original README; just optional node infra, not an install step). --- README.md | 67 ++++++++++++++++++++++++++++++++++++++++--------------- 1 file changed, 49 insertions(+), 18 deletions(-) diff --git a/README.md b/README.md index 70e958d..6329d8f 100644 --- a/README.md +++ b/README.md @@ -6,22 +6,51 @@ It runs as three Docker containers: the **API** (Flask + gunicorn, port 9001), a > **Installing or upgrading to v1.1.0-beta.1?** Follow [`BETA.md`](BETA.md) for the exact commands. -## Run it +## Deployment + +First, get and configure the repo (needed either way): ```bash git clone https://github.com/EIDA/ws-availability.git cd ws-availability cp config.py.sample config.py # edit MongoDB creds, FDSNWS_STATION_URL, SENTRY_ENVIRONMENT +``` + +Then pick one of: + +### Option A — Build locally + +Builds the images on your host. No registry access needed. + +```bash docker-compose up -d --build ``` -Check it: +### Option B — Pull pre-built images + +Each tagged release publishes images to GHCR, so you skip the build. Create `docker-compose.override.yml`: + +```yaml +services: + api: + image: ghcr.io/eida/ws-availability/api:1.1.0-beta.1 + cacher: + image: ghcr.io/eida/ws-availability/cacher:1.1.0-beta.1 +``` + +```bash +docker-compose pull +docker-compose up -d +``` + +Either way, three containers come up. Check it: ```bash +curl "127.0.0.1:9001/version" # -> 1.1.0-beta.1 curl "127.0.0.1:9001/extent?net=NA&start=2023-02-01" ``` -That's the whole install for a node that already has a populated WFCatalog. Requires MongoDB ≥ 4.2. +For a node that already has a populated WFCatalog, that's the whole install. A brand-new database also needs the one-time [database setup](#first-time-database-setup). Requires MongoDB ≥ 4.2. ## Endpoints @@ -54,21 +83,6 @@ The cacher runs a built-in scheduler — no host cron needed: - **06:00 UTC** — update the `availability` view from the last 4 days of WFCatalog data. - **On startup** — both run once, so a restart leaves data fresh. -## First-time database setup - -*Skip this if you already run ws-availability — the view and index already exist.* - -For a brand-new WFCatalog database, build the materialized view once and add the index: - -```bash -# Build the availability view (adjust daysBack to how far back you want) -mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo --eval "daysBack=365" views/main.js - -# Index — without it, every query is a full collection scan -mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo --eval ' - db.availability.createIndex({ net: 1, sta: 1, loc: 1, cha: 1, ts: 1, te: 1 })' -``` - ## Serving publicly The API speaks plain HTTP on 9001. To serve it at the standard FDSN URL with HTTPS, put it behind your existing reverse proxy. Apache example: @@ -98,6 +112,23 @@ RUNMODE=test uv run gunicorn --bind 0.0.0.0:9001 start:app Tests: `uv run pytest tests/` +## First-time database setup + +*Skip this if you already run ws-availability — the view and index already exist.* + +For a brand-new WFCatalog database, build the materialized view once and add the index the API relies on: + +```bash +# Build the availability view (adjust daysBack to how far back you want) +mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo --eval "daysBack=365" views/main.js + +# Index — without it, every query is a full collection scan +mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo --eval ' + db.availability.createIndex({ net: 1, sta: 1, loc: 1, cha: 1, ts: 1, te: 1 })' +``` + +After the initial build, the cacher keeps the view current automatically (see [What runs daily](#what-runs-daily)). + ## References Forked from [gitlab.com/resif/ws-availability](https://gitlab.com/resif/ws-availability) — thanks to our colleagues at RESIF for sharing their FDSNWS-Availability implementation. 💐 From 1c5511a0708bdecd1c3a4f28528ba606d609a607 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Tue, 26 May 2026 23:08:55 +0300 Subject: [PATCH 36/50] docs: make the fan-out explanation self-contained The one-liner assumed the reader already knew what fan-out was. Expand it into its own subsection that explains the problem (single cursor = sequential DB round-trips on long ranges), what fan-out does (concurrent day-aligned windows, merged into a byte-identical result), and the practical rules: off by default, only engages for ranges >= FANOUT_MIN_DAYS, applies to both endpoints, and the FANOUT_MAX_WORKERS / FANOUT_WINDOW_DAYS tunables with their connection-budget implication. --- README.md | 16 +++++++++++++++- 1 file changed, 15 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 6329d8f..ecf3f46 100644 --- a/README.md +++ b/README.md @@ -96,7 +96,21 @@ ProxyPassReverse /fdsnws/availability/1 http://127.0.0.1:9001 timeout=600 - **Workers** — default `--workers 1` in `docker-compose.yml`; raise if you have CPU/RAM headroom. - **Row/stream caps** — `MAX_DATA_ROWS` (default 2.5M) and `MAX_STREAMS` (default 2000) env vars guard against oversized requests (HTTP 413). -- **Parallel fan-out** — set `FANOUT_ENABLED=true` to speed up long multi-month queries by running them as parallel time-window cursors. Off by default; identical results when off. + +### Parallel fan-out + +By default, each request is answered by a **single** MongoDB cursor. The `availability` collection holds one document per channel-per-day, so a long time range means many documents fetched in sequential round-trips — most of the time is spent waiting on the database, one batch after another. + +Fan-out splits the request's time range into day-aligned windows and runs them as **concurrent** cursors, then merges the pieces back together. The waiting overlaps instead of stacking up, so a multi-month query finishes noticeably faster. Because each window is a separate day range, the slices never overlap and the merged result is **byte-identical** to the single-cursor answer — only the speed differs. + +Enable it with `FANOUT_ENABLED=true`. Details: + +- **Off by default.** When off, the request path is exactly the original single-cursor flow. +- **Only engages for ranges ≥ `FANOUT_MIN_DAYS`** (default 7). Shorter requests stay single-cursor — the thread overhead wouldn't pay off. +- **Applies to both `/query` and `/extent`** (they share the same fetch layer). +- **Tunables:** `FANOUT_MAX_WORKERS` (default 4 — also the number of MongoDB connections used while a fan-out request runs) and `FANOUT_WINDOW_DAYS` (default 30 — the size of each window; a 90-day query becomes ~3 windows). + +Best for long, narrow queries (months/years of a few channels). Before enabling on a busy node, check that `workers × FANOUT_MAX_WORKERS` stays within your MongoDB connection budget. ## Development From 5b64ef7446df69d313639ef2e44e6e916f746675 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Wed, 27 May 2026 13:15:58 +0300 Subject: [PATCH 37/50] docs: add config defaults, drop reverse-proxy section, tabulate fan-out vars MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit - Configuration table gains a Default column with the real production defaults from config.py.sample (incl. SENTRY_TRACES_SAMPLE_RATE = 1.0, the cache TTLs, MongoDB defaults). Operators see what each key falls back to without opening the sample. - Remove the "Serving publicly" reverse-proxy section — it's node infrastructure, not part of installing the service. - Present the FANOUT_* tunables as a table with defaults and effects, matching the config-table style. --- README.md | 44 ++++++++++++++++++++++---------------------- 1 file changed, 22 insertions(+), 22 deletions(-) diff --git a/README.md b/README.md index ecf3f46..b044883 100644 --- a/README.md +++ b/README.md @@ -66,14 +66,21 @@ NA SABA BHZ D 40.0 2023-02-01T00:00:00.000000Z Everything lives in `config.py` (copied from `config.py.sample`, gitignored so upgrades never touch it). Set these in the `RUNMODE == "production"` block: -| Key | Description | -|-----|-------------| -| `MONGODB_HOST` / `PORT` / `USR` / `PWD` / `NAME` | WFCatalog MongoDB connection. | -| `FDSNWS_STATION_URL` | FDSNWS-Station endpoint to harvest restriction info from. | -| `CACHE_HOST` / `CACHE_PORT` | Redis location. | -| `CACHE_RESP_PERIOD` | Response cache TTL in seconds (default 1200). | -| `SENTRY_DSN` | Sentry DSN; empty disables Sentry. | -| `SENTRY_ENVIRONMENT` | **Unique per-node tag** (e.g. `noa_production`) so Sentry can tell deployments apart. | +| Key | Default | Description | +|-----|---------|-------------| +| `MONGODB_HOST` | `host.docker.internal` | WFCatalog MongoDB host. | +| `MONGODB_PORT` | `27017` | MongoDB port. | +| `MONGODB_USR` / `MONGODB_PWD` | empty | MongoDB credentials (leave empty if no auth). | +| `MONGODB_NAME` | `wfrepo` | Database name; also used as `authSource`. | +| `FDSNWS_STATION_URL` | `https://orfeus-eu.org/fdsnws/station/1/query` | FDSNWS-Station endpoint to harvest restriction info from. | +| `CACHE_HOST` | `cache` | Redis host. | +| `CACHE_PORT` | `6379` | Redis port. | +| `CACHE_INVENTORY_KEY` | `inventory` | Redis key for the restriction inventory. | +| `CACHE_INVENTORY_PERIOD` | `0` | Inventory cache TTL in seconds; `0` = never expire. | +| `CACHE_RESP_PERIOD` | `1200` | Response cache TTL in seconds. | +| `SENTRY_DSN` | empty | Sentry DSN; empty disables Sentry. | +| `SENTRY_TRACES_SAMPLE_RATE` | `1.0` | Fraction of requests traced, `0.0`–`1.0`. | +| `SENTRY_ENVIRONMENT` | `{{node}}_production` | **Unique per-node tag** (e.g. `noa_production`) so Sentry can tell deployments apart. Must be changed from the placeholder. | ## What runs daily @@ -83,15 +90,6 @@ The cacher runs a built-in scheduler — no host cron needed: - **06:00 UTC** — update the `availability` view from the last 4 days of WFCatalog data. - **On startup** — both run once, so a restart leaves data fresh. -## Serving publicly - -The API speaks plain HTTP on 9001. To serve it at the standard FDSN URL with HTTPS, put it behind your existing reverse proxy. Apache example: - -```apache -ProxyPass /fdsnws/availability/1 http://127.0.0.1:9001 timeout=600 -ProxyPassReverse /fdsnws/availability/1 http://127.0.0.1:9001 timeout=600 -``` - ## Tuning (optional) - **Workers** — default `--workers 1` in `docker-compose.yml`; raise if you have CPU/RAM headroom. @@ -103,12 +101,14 @@ By default, each request is answered by a **single** MongoDB cursor. The `availa Fan-out splits the request's time range into day-aligned windows and runs them as **concurrent** cursors, then merges the pieces back together. The waiting overlaps instead of stacking up, so a multi-month query finishes noticeably faster. Because each window is a separate day range, the slices never overlap and the merged result is **byte-identical** to the single-cursor answer — only the speed differs. -Enable it with `FANOUT_ENABLED=true`. Details: +It is **off by default**, applies to **both `/query` and `/extent`** (they share the same fetch layer), and only engages when a request's time range is at least `FANOUT_MIN_DAYS` — shorter requests stay single-cursor because the thread overhead wouldn't pay off. Controlled by these environment variables: -- **Off by default.** When off, the request path is exactly the original single-cursor flow. -- **Only engages for ranges ≥ `FANOUT_MIN_DAYS`** (default 7). Shorter requests stay single-cursor — the thread overhead wouldn't pay off. -- **Applies to both `/query` and `/extent`** (they share the same fetch layer). -- **Tunables:** `FANOUT_MAX_WORKERS` (default 4 — also the number of MongoDB connections used while a fan-out request runs) and `FANOUT_WINDOW_DAYS` (default 30 — the size of each window; a 90-day query becomes ~3 windows). +| Variable | Default | Effect | +|----------|---------|--------| +| `FANOUT_ENABLED` | `false` | Master switch. When `false`, behaves exactly like the single-cursor path. | +| `FANOUT_MIN_DAYS` | `7` | Minimum request range, in days, before fan-out engages. | +| `FANOUT_WINDOW_DAYS` | `30` | Size of each window. A 90-day query becomes ~3 windows. | +| `FANOUT_MAX_WORKERS` | `4` | Max windows run at once — also the number of MongoDB connections a fan-out request uses. | Best for long, narrow queries (months/years of a few channels). Before enabling on a busy node, check that `workers × FANOUT_MAX_WORKERS` stays within your MongoDB connection budget. From 611bb2a53ee0947461dcf77164db60c4404977d8 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Wed, 27 May 2026 13:21:14 +0300 Subject: [PATCH 38/50] docs: add back-processing to DB section, keep host-cron out MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The old README documented daily materialized-view appension via a host cron (0 6 * * * mongosh ... main.js). That is obsolete in the in-app-scheduler model and was removed from the NOA deployment — do not reintroduce it. Keep the genuinely useful part the scheduler does NOT cover: ad-hoc back-processing of a specific historical range or stream subset via views/main.js parameters. Add two representative examples (a month, a network/station range) instead of the old wall of seven. Note explicitly that no host cron is needed. --- README.md | 16 +++++++++++++++- 1 file changed, 15 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index b044883..16ebe57 100644 --- a/README.md +++ b/README.md @@ -141,7 +141,21 @@ mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo --eval ' db.availability.createIndex({ net: 1, sta: 1, loc: 1, cha: 1, ts: 1, te: 1 })' ``` -After the initial build, the cacher keeps the view current automatically (see [What runs daily](#what-runs-daily)). +After the initial build, the cacher keeps the view current automatically (see [What runs daily](#what-runs-daily)) — **no host cron is needed** (earlier versions required one; it has been replaced by the built-in scheduler). + +### Back-processing + +The daily scheduler only refreshes a rolling recent window. To reprocess a specific historical range or a subset of streams — e.g. after a data correction or a backfill — run `views/main.js` manually with parameters (`networks`/`stations` accept regex): + +```bash +# A specific month +mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo \ + --eval "start='2023-01-01'; end='2023-01-31'" views/main.js + +# One network/station over a range +mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo \ + --eval "networks='NL'; stations='HGN'; start='2022-12-01'; end='2023-01-31'" views/main.js +``` ## References From b5302d18a0a982cc0571999793ec57c8c9b5b2f6 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Wed, 27 May 2026 13:21:44 +0300 Subject: [PATCH 39/50] docs: add a Troubleshooting section Re-add the troubleshooting guidance that was dropped during the README simplification. De-stale it (was "after upgrading to v1.0.5" -> generic "after an upgrade") and include the config.py-vs-sample diff one-liner so operators can see exactly which keys they're missing. Three checks: logs, config completeness, database reachability. --- README.md | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/README.md b/README.md index 16ebe57..01d9f44 100644 --- a/README.md +++ b/README.md @@ -157,6 +157,28 @@ mongosh -u USER -p PASSWORD --authenticationDatabase wfrepo \ --eval "networks='NL'; stations='HGN'; start='2022-12-01'; end='2023-01-31'" views/main.js ``` +## Troubleshooting + +If the service isn't working — often right after an upgrade — it's usually a configuration problem: + +1. **Check the logs** for runtime errors or connection failures: + + ```bash + docker logs fdsnws-availability-api + docker logs fdsnws-availability-cacher + ``` + +2. **Verify `config.py` has every field** the current version expects. New versions add keys; list what yours is missing versus the sample: + + ```bash + diff <(grep -oE '^[[:space:]]*[A-Z_]+ =' config.py | tr -d ' =' | sort -u) \ + <(grep -oE '^[[:space:]]*[A-Z_]+ =' config.py.sample | tr -d ' =' | sort -u) + ``` + + Lines prefixed `>` are keys present in the sample but missing from your `config.py` — add them. + +3. **Check database access** — confirm the MongoDB and Redis connection parameters in `config.py` are correct and that both services are reachable from the containers. + ## References Forked from [gitlab.com/resif/ws-availability](https://gitlab.com/resif/ws-availability) — thanks to our colleagues at RESIF for sharing their FDSNWS-Availability implementation. 💐 From 9608ea389d74fab8f9b1f63ee43fd45acfada523 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Wed, 27 May 2026 13:36:32 +0300 Subject: [PATCH 40/50] test: fix test_restriction.py imports so the full suite is green MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit test_restriction.py imported `from restriction import ...` and patched `restriction.redis`, which fails because the package is `apps.restriction` — the module was never collectible, so the file silently dropped out of every test run. Add the repo-root sys.path shim the other test modules use, switch the import to `apps.restriction`, and point both `@mock.patch` targets at `apps.restriction.redis`. The full suite now runs clean: `pytest tests/` -> 47 passed (was 38 with this file erroring out of collection). --- tests/test_restriction.py | 12 +++++++++--- 1 file changed, 9 insertions(+), 3 deletions(-) diff --git a/tests/test_restriction.py b/tests/test_restriction.py index ff35615..b7af09d 100644 --- a/tests/test_restriction.py +++ b/tests/test_restriction.py @@ -1,10 +1,16 @@ +import os +import sys from unittest import TestCase, mock from datetime import date -from restriction import Restriction, RestrictionInventory, Epoch + +# Ensure the repo root is importable so `apps.*` resolves when run via pytest. +sys.path.append(os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) + +from apps.restriction import Restriction, RestrictionInventory, Epoch class TestInventoryLoad(TestCase): - @mock.patch("restriction.redis") + @mock.patch("apps.restriction.redis") def test_init(self, mock_redis): with open("tests/data/cache.pickle", "rb") as handle: mock_redis.Redis().get.return_value = handle.read() @@ -17,7 +23,7 @@ def test_init(self, mock_redis): class TestIsRestricted(TestCase): - @mock.patch("restriction.redis") + @mock.patch("apps.restriction.redis") def setUp(self, mock_redis): with open("tests/data/cache.pickle", "rb") as handle: mock_redis.Redis().get.return_value = handle.read() From 96f96d883de071d44408cdf3797d183743391461 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Wed, 27 May 2026 15:36:06 +0300 Subject: [PATCH 41/50] docs(beta): point testers at the fork during the beta period The install steps reference the EIDA clone URL and the v1.1.0-beta.1 tag, which only exist there after the PR merges. During the beta the code lives on the contributor fork, so add a note at the top and switch the clone command to the fork URL. Reverts to the EIDA URL once merged. --- BETA.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/BETA.md b/BETA.md index d33732a..123e1d1 100644 --- a/BETA.md +++ b/BETA.md @@ -2,6 +2,8 @@ Beta release. API-compatible with v1.0.5. +> **During the beta**, the code lives on the contributor fork until it lands in EIDA. Clone from `https://github.com/NikolaosSokos/ws-availability.git`. Once merged into EIDA, use `https://github.com/EIDA/ws-availability.git` instead. + ## Prerequisites - Docker with `docker-compose` (v1) or `docker compose` (v2). @@ -10,7 +12,7 @@ Beta release. API-compatible with v1.0.5. ## Install -`cd` into your `ws-availability` checkout (or `git clone https://github.com/EIDA/ws-availability.git` if you don't have one yet), then: +`cd` into your `ws-availability` checkout (or `git clone https://github.com/NikolaosSokos/ws-availability.git` if you don't have one yet — see the note above), then: 1. Check out the beta. From 4973a7c62613a01f07846aa8d0444ac63ac0b911 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Wed, 27 May 2026 16:52:09 +0300 Subject: [PATCH 42/50] docs: point beta install at the EIDA beta branch (branch-only) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The beta now ships as the beta/v1.1.0-beta.1 branch on EIDA/ws-availability rather than a fork tag, and without pre-built images (branch-only — no tag-triggered publish, avoids a beta PyPI publish). - BETA.md: clone from EIDA, `git checkout beta/v1.1.0-beta.1` (branch, not tag), drop the "clone the fork during beta" note. Build locally. - README: Option B (pull images) is now version-generic and notes images exist only for tagged releases; the branch beta uses Option A. --- BETA.md | 12 +++++------- README.md | 9 ++++++--- 2 files changed, 11 insertions(+), 10 deletions(-) diff --git a/BETA.md b/BETA.md index 123e1d1..5854605 100644 --- a/BETA.md +++ b/BETA.md @@ -1,8 +1,6 @@ # ws-availability v1.1.0-beta.1 — Install -Beta release. API-compatible with v1.0.5. - -> **During the beta**, the code lives on the contributor fork until it lands in EIDA. Clone from `https://github.com/NikolaosSokos/ws-availability.git`. Once merged into EIDA, use `https://github.com/EIDA/ws-availability.git` instead. +Beta release. API-compatible with v1.0.5. The beta ships as the **`beta/v1.1.0-beta.1` branch** on `EIDA/ws-availability` — you build it locally (no pre-built images during the beta). ## Prerequisites @@ -12,13 +10,13 @@ Beta release. API-compatible with v1.0.5. ## Install -`cd` into your `ws-availability` checkout (or `git clone https://github.com/NikolaosSokos/ws-availability.git` if you don't have one yet — see the note above), then: +`cd` into your `ws-availability` checkout (or `git clone https://github.com/EIDA/ws-availability.git` if you don't have one yet), then: -1. Check out the beta. +1. Check out the beta branch. ```bash - git fetch --tags origin - git checkout v1.1.0-beta.1 + git fetch origin + git checkout beta/v1.1.0-beta.1 ``` 2. `config.py` — keep your existing one if you already have it; otherwise copy the sample: diff --git a/README.md b/README.md index 01d9f44..0129cb6 100644 --- a/README.md +++ b/README.md @@ -28,14 +28,15 @@ docker-compose up -d --build ### Option B — Pull pre-built images -Each tagged release publishes images to GHCR, so you skip the build. Create `docker-compose.override.yml`: +Each **tagged release** publishes images to GHCR, so you can skip the build. Replace `` with a release tag (e.g. `1.1.0`): ```yaml +# docker-compose.override.yml services: api: - image: ghcr.io/eida/ws-availability/api:1.1.0-beta.1 + image: ghcr.io/eida/ws-availability/api: cacher: - image: ghcr.io/eida/ws-availability/cacher:1.1.0-beta.1 + image: ghcr.io/eida/ws-availability/cacher: ``` ```bash @@ -43,6 +44,8 @@ docker-compose pull docker-compose up -d ``` +> Pre-built images exist only for tagged releases. The current beta ships as a branch, so use Option A (build locally) for it — see [`BETA.md`](BETA.md). + Either way, three containers come up. Check it: ```bash From 30c86b54c29a544ae31ad3a7721a7aba4d1f283e Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Thu, 28 May 2026 18:54:47 +0300 Subject: [PATCH 43/50] fix(config): make config.py the single source of truth (closes Tobias's LMU bug) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit docker-compose.yml passed MONGODB_HOST/PORT/USR/PWD/NAME and FDSNWS_STATION_URL into the container with hardcoded defaults (${MONGODB_HOST:-127.0.0.1}, etc.). apps/settings.py then dropped any config.py value whose key was present in os.environ — but those keys were ALWAYS present, because docker-compose set them unconditionally. Net result: editing config.py did nothing. The container connected to the docker-compose defaults instead. NOA didn't notice because Mongo on NOA happens to be at 127.0.0.1 (host networking, same host). LMU has Mongo on a separate machine, so the container hit "Connection refused" — Tobias reported this during beta testing. Fix: * docker-compose.yml — remove MONGODB_*/FDSNWS_STATION_URL from the api service environment. config.py is now the only place those settings live. Side effect: the leaked NOA credentials (`wfrepouser`, `2023wf`) and the NOA-internal station URL are gone from the file. * apps/settings.py — extract the precedence logic into a testable build_settings(legacy, env=None). Change the override check from `if key in os.environ` to `if env.get(key)` (truthy), so an empty-string env no longer clobbers config.py either. Tests added: * tests/test_settings.py::TestConfigPyVsEnvPrecedence — the four cases (config wins when env unset; env wins when set; empty env doesn't override; None legacy keeps Pydantic default). * tests/test_docker_compose.py — static YAML guard so re-adding any of the config.py-only keys to the api/cacher env block fails CI; separately asserts the NOA credentials never come back. * tests/test_wfcatalog_query.py::TestBuildQueryFieldOrder — locks in the #51 field order in _build_query so a future refactor can't silently break MongoDB index usage. pyproject.toml adds pyyaml to dev deps for the static compose test. 58 passed, 0 skipped. --- apps/settings.py | 34 +++++++++++------ docker-compose.yml | 11 ++---- pyproject.toml | 1 + tests/test_docker_compose.py | 72 +++++++++++++++++++++++++++++++++++ tests/test_settings.py | 55 +++++++++++++++++++++++++- tests/test_wfcatalog_query.py | 38 ++++++++++++++++++ uv.lock | 38 ++++++++++++++++++ 7 files changed, 229 insertions(+), 20 deletions(-) create mode 100644 tests/test_docker_compose.py diff --git a/apps/settings.py b/apps/settings.py index c1775b4..551d6e0 100644 --- a/apps/settings.py +++ b/apps/settings.py @@ -88,15 +88,25 @@ def load_legacy_config(): return {} -# Load legacy config options and filter out None values -legacy_defaults = {k: v for k, v in load_legacy_config().items() if v is not None} - -# Remove keys from legacy_defaults if they are set in environment variables -# This ensures Docker environment variables (e.g. MONGODB_HOST) take precedence -# over values hardcoded in config.py (like "localhost") -for key in list(legacy_defaults.keys()): - if key in os.environ: - del legacy_defaults[key] - -# Instantiate settings with remaining legacy defaults -settings = Settings(**legacy_defaults) +def build_settings(legacy: dict, env: dict | None = None) -> "Settings": + """Combine config.py values with environment overrides into a Settings. + + Precedence: a **non-empty** env var beats config.py. An env var that is + missing, or set to the empty string, falls back to the config.py value. + This protects against the scenario where docker-compose passes + ``${MONGODB_HOST:-…}`` defaults that would otherwise silently override + operator-edited config.py values (the "Tobias/LMU" bug). + """ + env = os.environ if env is None else env + overrides: dict = {} + for k, v in legacy.items(): + if v is None: + continue + if env.get(k): # truthy: present AND non-empty + continue + overrides[k] = v + return Settings(**overrides) + + +# Instantiate settings: config.py values, overridden by non-empty env vars. +settings = build_settings(load_legacy_config()) diff --git a/docker-compose.yml b/docker-compose.yml index f80bc5c..7280303 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -44,13 +44,10 @@ services: RUNMODE: production # Host Networking: Redis is on localhost CACHE_HOST: "127.0.0.1" - # Gateway IP (Update if needed) - MONGODB_HOST: ${MONGODB_HOST:-127.0.0.1} - MONGODB_PORT: ${MONGODB_PORT:-27017} - MONGODB_USR: ${MONGODB_USR:-wfrepouser} - MONGODB_PWD: ${MONGODB_PWD:-2023wf} - MONGODB_NAME: ${MONGODB_NAME:-wfrepo} - FDSNWS_STATION_URL: "https://eida.gein.noa.gr/fdsnws/station/1/query" + # MongoDB / FDSNWS-Station / Sentry settings are read from config.py. + # Do NOT add MONGODB_* or FDSNWS_STATION_URL here — env vars set in this + # block take precedence over config.py and would silently override the + # operator's settings. # Limit OpenBLAS threads to prevent "pthread_create failed" on restricted servers OPENBLAS_NUM_THREADS: 1 MKL_NUM_THREADS: 1 diff --git a/pyproject.toml b/pyproject.toml index 6374173..8e1860b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -25,6 +25,7 @@ dependencies = [ dev = [ "pytest>=9.0.2", "pytest-cov>=7.0.0", + "pyyaml>=6.0", ] [tool.setuptools.packages.find] diff --git a/tests/test_docker_compose.py b/tests/test_docker_compose.py new file mode 100644 index 0000000..eff0270 --- /dev/null +++ b/tests/test_docker_compose.py @@ -0,0 +1,72 @@ +"""Static checks on docker-compose.yml. + +These tests don't spin Docker up; they parse the YAML and assert structural +invariants we never want to silently regress. Tobias's beta test exposed a +class of bugs where someone added an env var to the api/cacher block whose +*hardcoded default* overrode the operator's config.py. We don't want that +shape to come back. +""" +from pathlib import Path +import re + +import pytest + +try: + import yaml # PyYAML +except ImportError: # pragma: no cover - PyYAML ships with the dev env + pytest.skip("PyYAML is not installed", allow_module_level=True) + + +COMPOSE_PATH = Path(__file__).resolve().parents[1] / "docker-compose.yml" + +# Keys that must live in config.py only. If any of these appear in the +# api/cacher service env block, the operator's config.py will be silently +# overridden — the LMU/Tobias bug. +CONFIG_PY_ONLY_KEYS = { + "MONGODB_HOST", + "MONGODB_PORT", + "MONGODB_USR", + "MONGODB_PWD", + "MONGODB_NAME", + "MONGODB_AUTH_SOURCE", + "FDSNWS_STATION_URL", + "SENTRY_DSN", + "SENTRY_TRACES_SAMPLE_RATE", + "SENTRY_ENVIRONMENT", +} + + +@pytest.fixture(scope="module") +def compose(): + with COMPOSE_PATH.open() as f: + return yaml.safe_load(f) + + +@pytest.mark.parametrize("service", ["api", "cacher"]) +def test_no_config_py_keys_in_env_block(compose, service): + env = compose["services"][service].get("environment", {}) or {} + if isinstance(env, list): + # docker-compose accepts either {KEY: VAL} or ["KEY=VAL"] form + keys = {item.split("=", 1)[0] for item in env} + else: + keys = set(env.keys()) + leaked = keys & CONFIG_PY_ONLY_KEYS + assert not leaked, ( + f"docker-compose.yml `{service}.environment` contains keys that must " + f"be set in config.py only: {sorted(leaked)}. Adding them here makes " + f"config.py silently lose (see the comment in apps/settings.py " + f"build_settings)." + ) + + +def test_no_leaked_credentials_in_compose(): + """Catch the specific NOA values that were once committed: `wfrepouser`, + `2023wf`, and the NOA-internal station URL. These should never be in + docker-compose.yml again — they belong in operator-local config.py.""" + text = COMPOSE_PATH.read_text() + for needle, why in [ + ("wfrepouser", "NOA-specific MONGODB_USR default"), + ("2023wf", "NOA MongoDB password leaked in v1.0.x"), + ("eida.gein.noa.gr", "NOA-internal station URL hardcoded"), + ]: + assert needle not in text, f"`{needle}` appeared in docker-compose.yml — {why}" diff --git a/tests/test_settings.py b/tests/test_settings.py index 1b3f259..e59abf4 100644 --- a/tests/test_settings.py +++ b/tests/test_settings.py @@ -1,6 +1,6 @@ import os import pytest -from apps.settings import Settings +from apps.settings import Settings, build_settings class TestSettings: def test_default_values(self): @@ -67,3 +67,56 @@ def test_auth_source_explicit_override(self): del os.environ["MONGODB_AUTH_SOURCE"] del os.environ["MONGODB_NAME"] + + +class TestConfigPyVsEnvPrecedence: + """Guard rails for the docker-compose ↔ config.py precedence bug. + + Until this commit, apps/settings.py removed any config.py value whose + *key* appeared in os.environ. docker-compose blindly passed defaults + like MONGODB_HOST=${MONGODB_HOST:-127.0.0.1}, so the key was always + present, and config.py was silently ignored. The fix: + - docker-compose no longer sets MONGODB_*/FDSNWS_STATION_URL, + - build_settings() requires a *non-empty* env var to override config.py. + + Pydantic always reads aliases from the real ``os.environ`` for its own + env-precedence layer, so these tests manipulate the process env directly + and clean up in ``setup_method``/``teardown_method``. + """ + + @staticmethod + def _clear(): + for k in ("MONGODB_HOST", "MONGODB_NAME"): + os.environ.pop(k, None) + + def setup_method(self, method): + self._clear() + + def teardown_method(self, method): + self._clear() + + def test_config_py_wins_when_env_unset(self): + """Operator edits config.py, env is clean — config.py value reaches Settings.""" + s = build_settings({"MONGODB_HOST": "mongo.lmu.example", "MONGODB_NAME": "wfrepo"}) + assert s.mongodb_host == "mongo.lmu.example" + assert s.mongodb_name == "wfrepo" + + def test_env_var_wins_when_explicitly_set(self): + """Power user exports MONGODB_HOST — env wins (existing override path).""" + os.environ["MONGODB_HOST"] = "from-env" + s = build_settings({"MONGODB_HOST": "from-config-py"}) + assert s.mongodb_host == "from-env" + + def test_empty_env_var_does_not_override_config(self): + """Defense-in-depth: empty-string env (the old ``${VAR:-}`` shape) + must NOT blow away the config.py value — this is what made + Tobias's container connect to the wrong host.""" + os.environ["MONGODB_HOST"] = "" + s = build_settings({"MONGODB_HOST": "mongo.lmu.example"}) + assert s.mongodb_host == "mongo.lmu.example" + + def test_none_legacy_value_does_not_clobber_default(self): + """If config.py never set a key (None), build_settings leaves the + Pydantic default alone.""" + s = build_settings({"MONGODB_HOST": None}) + assert s.mongodb_host == "localhost" # Pydantic Field default diff --git a/tests/test_wfcatalog_query.py b/tests/test_wfcatalog_query.py index bcd31ea..24da49a 100644 --- a/tests/test_wfcatalog_query.py +++ b/tests/test_wfcatalog_query.py @@ -238,5 +238,43 @@ def test_filter_invalid_data(self): self.assertEqual(len(results), 1) self.assertEqual(results[0][6], valid_segment["ts"]) # Index 6 is start time + +class TestBuildQueryFieldOrder(unittest.TestCase): + """Lock in the #51 fix: query field order must match the compound index + ``{net, sta, loc, cha, ts, te}`` so MongoDB's planner picks it up implicitly. + Python dicts preserve insertion order, and the planner sees that order. + + `qlt` is not in the index — it must come *after* the indexed prefix. + """ + + def test_field_order_matches_compound_index(self): + params = { + "network": "NL", + "station": "HGN", + "location": "--", + "channel": "BHZ", + "quality": "D", + } + start = datetime(2024, 1, 1) + end = datetime(2024, 2, 1) + qry = wfcatalog_client._build_query(params, start, end) + # Indexed prefix first, in index order; qlt last. + self.assertEqual(list(qry.keys()), ["net", "sta", "loc", "cha", "ts", "te", "qlt"]) + + def test_field_order_holds_when_some_filters_skipped(self): + 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}, ] From 87482c0698f2c8ae7249503aadd0c926b37fb7ac Mon Sep 17 00:00:00 2001 From: Tobias Megies Date: Thu, 28 May 2026 15:53:31 +0200 Subject: [PATCH 44/50] slightly safer config variable setting could make an actual difference if the desired value is set as an OS environment variable and if that value evaluates to False with bool() E.g. if trying to set an empty string or the number zero it might inadvertantly get overridden by the default value from config (cherry picked from commit 5ea288da9bca15b0c21d6386247d56dc1f521bac) --- config.py.sample | 38 +++++++++++++++++--------------------- 1 file changed, 17 insertions(+), 21 deletions(-) diff --git a/config.py.sample b/config.py.sample index 20a76a7..1ca3a57 100644 --- a/config.py.sample +++ b/config.py.sample @@ -45,29 +45,25 @@ class Config: CACHE_RESP_PERIOD = 1200 try: - MONGODB_HOST = os.environ.get("MONGODB_HOST") or MONGODB_HOST - MONGODB_PORT = os.environ.get("MONGODB_PORT") or MONGODB_PORT - MONGODB_USR = os.environ.get("MONGODB_USR") or MONGODB_USR - MONGODB_PWD = os.environ.get("MONGODB_PWD") or MONGODB_PWD - MONGODB_NAME = os.environ.get("MONGODB_NAME") or MONGODB_NAME - MONGODB_AUTH_SOURCE = os.environ.get("MONGODB_AUTH_SOURCE") or MONGODB_AUTH_SOURCE - FDSNWS_STATION_URL = os.environ.get("FDSNWS_STATION_URL") or FDSNWS_STATION_URL - CACHE_HOST = os.environ.get("CACHE_HOST") or CACHE_HOST - CACHE_PORT = os.environ.get("CACHE_PORT") or CACHE_PORT - CACHE_INVENTORY_KEY = ( - os.environ.get("CACHE_INVENTORY_KEY") or CACHE_INVENTORY_KEY - ) - CACHE_INVENTORY_PERIOD = ( - os.environ.get("CACHE_INVENTORY_PERIOD") or CACHE_INVENTORY_PERIOD - ) - CACHE_RESP_PERIOD = ( - os.environ.get("CACHE_SHORT_INV_PERIOD") or CACHE_RESP_PERIOD - ) + MONGODB_HOST = os.environ.get("MONGODB_HOST", MONGODB_HOST) + MONGODB_PORT = os.environ.get("MONGODB_PORT", MONGODB_PORT) + MONGODB_USR = os.environ.get("MONGODB_USR", MONGODB_USR) + MONGODB_PWD = os.environ.get("MONGODB_PWD", MONGODB_PWD) + MONGODB_NAME = os.environ.get("MONGODB_NAME", MONGODB_NAME) + MONGODB_AUTH_SOURCE = os.environ.get("MONGODB_AUTH_SOURCE", MONGODB_AUTH_SOURCE) + FDSNWS_STATION_URL = os.environ.get("FDSNWS_STATION_URL", FDSNWS_STATION_URL) + CACHE_HOST = os.environ.get("CACHE_HOST", CACHE_HOST) + CACHE_PORT = os.environ.get("CACHE_PORT", CACHE_PORT) + CACHE_INVENTORY_KEY = os.environ.get( + "CACHE_INVENTORY_KEY", CACHE_INVENTORY_KEY) + CACHE_INVENTORY_PERIOD = os.environ.get( + "CACHE_INVENTORY_PERIOD", CACHE_INVENTORY_PERIOD) + CACHE_RESP_PERIOD = os.environ.get( + "CACHE_SHORT_INV_PERIOD", CACHE_RESP_PERIOD) # Sentry configuration (optional) - SENTRY_DSN = os.environ.get("SENTRY_DSN") or "" + SENTRY_DSN = os.environ.get("SENTRY_DSN", "") SENTRY_TRACES_SAMPLE_RATE = float( - os.environ.get("SENTRY_TRACES_SAMPLE_RATE") or "1.0" - ) + os.environ.get("SENTRY_TRACES_SAMPLE_RATE", "1.0")) # ===================================================================== # >>> REQUIRED: SET THIS BEFORE DEPLOYING <<< # Per-node Sentry environment tag — identifies THIS deployment in Sentry. From cc0990b9ddc178db9ecc7f886b141fcb414f785b Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Thu, 28 May 2026 19:09:58 +0300 Subject: [PATCH 45/50] test: lock in PR #62's safer env-var pattern in config.py.sample Static check: regex over config.py.sample fails if anyone reintroduces the `os.environ.get(...) or DEFAULT` shape that PR #62 replaced. The `or` form falls back to DEFAULT when env is the empty string (and, in numeric contexts, when env is "0"), silently ignoring an operator who genuinely wants to set that value. --- tests/test_settings.py | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/tests/test_settings.py b/tests/test_settings.py index e59abf4..7fe6a6d 100644 --- a/tests/test_settings.py +++ b/tests/test_settings.py @@ -120,3 +120,26 @@ def test_none_legacy_value_does_not_clobber_default(self): Pydantic default alone.""" s = build_settings({"MONGODB_HOST": None}) assert s.mongodb_host == "localhost" # Pydantic Field default + + +class TestConfigSampleHasSaferGetters: + """Lock in Tobias Megies's PR #62: config.py.sample must use + ``os.environ.get("X", X)`` — never the leaky ``os.environ.get("X") or X`` + pattern. The latter falls back to the default when env is the literal + string ``"0"`` (in numeric contexts) or ``""``, silently ignoring an + operator who genuinely wants to set that value. + """ + + def test_no_or_fallback_pattern_in_config_sample(self): + from pathlib import Path + sample = Path(__file__).resolve().parents[1] / "config.py.sample" + text = sample.read_text() + # The bad shape: os.environ.get("X") or … + # The good shape: os.environ.get("X", default) + import re + bad = re.findall(r'os\.environ\.get\([^)]+\)\s+or\b', text) + assert not bad, ( + f"config.py.sample uses the leaky pattern `os.environ.get(...) or X` " + f"in {len(bad)} place(s): {bad}. Use `os.environ.get('X', X)` instead " + f"(PR #62 by Tobias Megies)." + ) From 64af113d4f6c21c6185a758c36148adbca69e10e Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Thu, 28 May 2026 19:19:04 +0300 Subject: [PATCH 46/50] docs(BETA): use cp -n + clarify config.py is the single source MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit BETA.md updates from Tobias's beta review: - Step 2 install: `cp -n config.py.sample config.py` (no-clobber) replaces the two-line `[ -f config.py ] || cp ...` conditional. - Sentry example for v1.0.3 upgraders uses the PR #62 safer pattern `os.environ.get("X", default)` (we don't want operators copying the old leaky shape we just removed). - One-sentence callout at the top of Install explaining config.py is now the only place for MongoDB / FDSNWS-Station / Sentry settings — paired with the runtime change from commit 30c86b5. Regression tests in tests/test_docker_compose.py: - BETA.md must contain `cp -n config.py.sample config.py` and must NOT contain the conditional pattern. - BETA.md code snippets must NOT use `os.environ.get(...) or X`. 61/61 tests pass. --- BETA.md | 10 +++++++--- tests/test_docker_compose.py | 34 ++++++++++++++++++++++++++++++++++ 2 files changed, 41 insertions(+), 3 deletions(-) diff --git a/BETA.md b/BETA.md index 5854605..8e1b62d 100644 --- a/BETA.md +++ b/BETA.md @@ -19,13 +19,17 @@ Beta release. API-compatible with v1.0.5. The beta ships as the **`beta/v1.1.0-b git checkout beta/v1.1.0-beta.1 ``` + > **What's new for operators:** `config.py` is now the only place to set MongoDB, FDSNWS-Station and Sentry settings — `docker-compose.yml` no longer passes them to the container, so your edits in `config.py` actually take effect. + 2. `config.py` — keep your existing one if you already have it; otherwise copy the sample: ```bash - [ -f config.py ] || cp config.py.sample config.py + cp -n config.py.sample config.py $EDITOR config.py ``` + (`cp -n` won't overwrite an existing `config.py`.) + `MONGODB_*`, `CACHE_*`, and `FDSNWS_STATION_URL` are unchanged since v1.0.3 — keep your existing values. **What you must add depends on the version you're upgrading from.** Add the missing lines inside the `try:` block of `config.py` (next to the other `os.environ.get(...)` lines): @@ -39,8 +43,8 @@ Beta release. API-compatible with v1.0.5. The beta ships as the **`beta/v1.1.0-b - **Upgrading from v1.0.3 (or earlier)** — your `config.py` predates Sentry entirely. Add all three: ```python - SENTRY_DSN = os.environ.get("SENTRY_DSN") or "" # paste your Sentry DSN, or leave "" to disable Sentry - SENTRY_TRACES_SAMPLE_RATE = float(os.environ.get("SENTRY_TRACES_SAMPLE_RATE") or "1.0") + SENTRY_DSN = os.environ.get("SENTRY_DSN", "") # paste your Sentry DSN, or leave "" to disable Sentry + SENTRY_TRACES_SAMPLE_RATE = float(os.environ.get("SENTRY_TRACES_SAMPLE_RATE", "1.0")) SENTRY_ENVIRONMENT = "yournode_production" ``` diff --git a/tests/test_docker_compose.py b/tests/test_docker_compose.py index eff0270..43b0028 100644 --- a/tests/test_docker_compose.py +++ b/tests/test_docker_compose.py @@ -70,3 +70,37 @@ def test_no_leaked_credentials_in_compose(): ("eida.gein.noa.gr", "NOA-internal station URL hardcoded"), ]: assert needle not in text, f"`{needle}` appeared in docker-compose.yml — {why}" + + +# --- BETA.md doc invariants --------------------------------------------------- + +BETA_MD_PATH = Path(__file__).resolve().parents[1] / "BETA.md" + + +def test_beta_md_uses_cp_n_for_config(): + """Tobias's PR #62 review comment: use `cp -n config.py.sample config.py` + instead of the two-line `[ -f config.py ] || cp ...` pattern. + `cp -n` won't overwrite an existing config.py, which is exactly the + upgrade-safe semantics we want.""" + text = BETA_MD_PATH.read_text() + assert "cp -n config.py.sample config.py" in text, ( + "BETA.md must instruct operators to use `cp -n config.py.sample config.py` " + "(safe no-clobber copy). Bare `cp` would overwrite an existing config.py." + ) + assert "[ -f config.py ] || cp" not in text, ( + "BETA.md still has the old `[ -f config.py ] || cp ...` conditional. " + "Switch to `cp -n config.py.sample config.py`." + ) + + +def test_beta_md_example_snippets_use_safe_getter_pattern(): + """Examples in BETA.md must use `os.environ.get('X', DEFAULT)`, never + `os.environ.get('X') or DEFAULT`. Anything we teach in docs becomes + cargo-culted into other operators' config.py files (PR #62).""" + text = BETA_MD_PATH.read_text() + import re + bad = re.findall(r'os\.environ\.get\([^)]+\)\s+or\b', text) + assert not bad, ( + f"BETA.md uses the leaky `os.environ.get(...) or X` pattern in " + f"{len(bad)} place(s): {bad}. Use `os.environ.get('X', X)` instead." + ) From 6ef2b73387bb450eb2b6518cd35e0381867cb90f Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Thu, 28 May 2026 19:22:59 +0300 Subject: [PATCH 47/50] feat: gunicorn workers settable from config.py (closes Tobias feedback) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Tobias's beta review: "I do firmly believe the number of workers should be settable in the config, as opposed to having to patch the actual code — even if it's in a yaml." Adds gunicorn.conf.py which reads workers from Config.GUNICORN_WORKERS, defaulting to 1 when config.py isn't present (gunicorn must always be able to boot). docker-compose.yml's api command now invokes gunicorn with -c gunicorn.conf.py instead of a hardcoded --workers; same change on Dockerfile.api's CMD so the image works without compose too. config.py.sample gets GUNICORN_WORKERS = 1 in both RUNMODE blocks plus an int-coerced env override using the PR #62 safer pattern. README.md gains a config-table row and the Tuning section now points at config.py. Tests (tests/test_gunicorn_conf.py): - workers reads from Config.GUNICORN_WORKERS when present - falls back to 1 when GUNICORN_WORKERS missing - falls back to 1 when config.py itself is missing - coerces string env value to int - docker-compose api command uses -c gunicorn.conf.py, no hardcoded --workers - Dockerfile.api COPYs gunicorn.conf.py into the image 67/67 tests pass. --- Dockerfile.api | 6 +- README.md | 3 +- config.py.sample | 5 ++ docker-compose.yml | 11 ++-- gunicorn.conf.py | 16 +++++ tests/test_gunicorn_conf.py | 113 ++++++++++++++++++++++++++++++++++++ 6 files changed, 145 insertions(+), 9 deletions(-) create mode 100644 gunicorn.conf.py create mode 100644 tests/test_gunicorn_conf.py diff --git a/Dockerfile.api b/Dockerfile.api index a92b66f..76ec3dc 100644 --- a/Dockerfile.api +++ b/Dockerfile.api @@ -5,7 +5,7 @@ WORKDIR /appli COPY pyproject.toml uv.lock ./ RUN uv sync --frozen --no-dev --no-progress -COPY start.py config.py* ./ +COPY start.py config.py* gunicorn.conf.py ./ COPY apps ./apps/ COPY templates ./templates/ COPY tests ./tests/ @@ -13,4 +13,6 @@ COPY tests ./tests/ # Place executables in the environment at the front of the path ENV PATH="/appli/.venv/bin:$PATH" -CMD ["/bin/bash", "-c", "gunicorn --workers 2 --timeout 600 --bind 0.0.0.0:9001 start:app"] +# Default CMD when running the image without docker-compose. Worker count +# comes from gunicorn.conf.py → Config.GUNICORN_WORKERS (defaults to 1). +CMD ["/bin/bash", "-c", "gunicorn -c gunicorn.conf.py --timeout 600 --bind 0.0.0.0:9001 start:app"] diff --git a/README.md b/README.md index b948182..41f16fd 100644 --- a/README.md +++ b/README.md @@ -85,6 +85,7 @@ Everything lives in `config.py` (copied from `config.py.sample`, gitignored so u | `SENTRY_DSN` | empty | Sentry DSN; empty disables Sentry. | | `SENTRY_TRACES_SAMPLE_RATE` | `1.0` | Fraction of requests traced, `0.0`–`1.0`. | | `SENTRY_ENVIRONMENT` | `{{node}}_production` | **Unique per-node tag** (e.g. `noa_production`) so Sentry can tell deployments apart. Must be changed from the placeholder. | +| `GUNICORN_WORKERS` | `1` | Number of gunicorn worker processes. Raise (2–3, or `(2 × CPU cores) + 1`) if you have CPU/RAM headroom. Read by `gunicorn.conf.py` at container start. | ## What runs daily @@ -96,7 +97,7 @@ The cacher runs a built-in scheduler — no host cron needed: ## Tuning (optional) -- **Workers** — default `--workers 1` in `docker-compose.yml`; raise if you have CPU/RAM headroom. +- **Workers** — set `GUNICORN_WORKERS` in `config.py` (default `1`). `gunicorn.conf.py` reads it at startup. Raise if you have CPU/RAM headroom. - **Row/stream caps** — `MAX_DATA_ROWS` (default 2.5M) and `MAX_STREAMS` (default 2000) env vars guard against oversized requests (HTTP 413). ### Parallel fan-out diff --git a/config.py.sample b/config.py.sample index 1ca3a57..46d069f 100644 --- a/config.py.sample +++ b/config.py.sample @@ -27,6 +27,9 @@ class Config: CACHE_INVENTORY_KEY = "inventory" CACHE_INVENTORY_PERIOD = 0 CACHE_RESP_PERIOD = 1200 + # Gunicorn worker count — raise (2–3, or `(2 × CPU cores) + 1`) + # if you have CPU/RAM headroom. Read by gunicorn.conf.py at startup. + GUNICORN_WORKERS = 1 elif RUNMODE == "test": # WFCatalog MongoDB MONGODB_HOST = "localhost" @@ -43,6 +46,7 @@ class Config: CACHE_INVENTORY_KEY = "inventory" CACHE_INVENTORY_PERIOD = 0 CACHE_RESP_PERIOD = 1200 + GUNICORN_WORKERS = 1 try: MONGODB_HOST = os.environ.get("MONGODB_HOST", MONGODB_HOST) @@ -60,6 +64,7 @@ class Config: "CACHE_INVENTORY_PERIOD", CACHE_INVENTORY_PERIOD) CACHE_RESP_PERIOD = os.environ.get( "CACHE_SHORT_INV_PERIOD", CACHE_RESP_PERIOD) + GUNICORN_WORKERS = int(os.environ.get("GUNICORN_WORKERS", GUNICORN_WORKERS)) # Sentry configuration (optional) SENTRY_DSN = os.environ.get("SENTRY_DSN", "") SENTRY_TRACES_SAMPLE_RATE = float( diff --git a/docker-compose.yml b/docker-compose.yml index 7280303..e9b810a 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -32,12 +32,11 @@ services: context: ./ dockerfile: Dockerfile.api restart: always - # Worker Configuration: - # - Default: 1 worker (most stable for resource-constrained servers) - # - Moderate: 2-3 workers (recommended if no thread creation issues) - # - High-performance: (2 × CPU cores) + 1 workers - # See README.md "Performance Tuning" section for details - command: gunicorn --bind 0.0.0.0:9001 --workers 1 --timeout 600 start:app + # Worker count is set in config.py via GUNICORN_WORKERS — see gunicorn.conf.py. + # Default is 1; raise (2–3, or `(2 × CPU cores) + 1`) if you have CPU/RAM + # headroom. Bind / timeout stay on the CLI because they're container-level + # concerns, not per-operator tunables. + command: gunicorn -c gunicorn.conf.py --bind 0.0.0.0:9001 --timeout 600 start:app container_name: fdsnws-availability-api network_mode: "host" environment: diff --git a/gunicorn.conf.py b/gunicorn.conf.py new file mode 100644 index 0000000..ea40604 --- /dev/null +++ b/gunicorn.conf.py @@ -0,0 +1,16 @@ +"""Gunicorn configuration for ws-availability. + +Reads `workers` from ``config.Config.GUNICORN_WORKERS`` so operators can +tune the worker count by editing ``config.py`` instead of patching +``docker-compose.yml``. Falls back to 1 worker if ``config.py`` is missing +or doesn't define the key — gunicorn must always be able to boot. + +Anything *not* settable per-operator (bind address, timeout) stays on +gunicorn's command line in ``docker-compose.yml`` so this file remains +short and orthogonal. +""" +try: + from config import Config + workers = int(getattr(Config, "GUNICORN_WORKERS", 1) or 1) +except Exception: + workers = 1 diff --git a/tests/test_gunicorn_conf.py b/tests/test_gunicorn_conf.py new file mode 100644 index 0000000..f7976de --- /dev/null +++ b/tests/test_gunicorn_conf.py @@ -0,0 +1,113 @@ +"""Tests for gunicorn.conf.py. + +Tobias's beta review (paraphrased): *"the number of workers should be +settable in the config, not by patching docker-compose.yml."* This file +locks in that contract: + +1. ``gunicorn.conf.py`` reads ``workers`` from ``config.Config.GUNICORN_WORKERS``. +2. It falls back to 1 worker if ``config.py`` is missing — gunicorn must + always be able to boot. +3. ``docker-compose.yml`` invokes gunicorn with ``-c gunicorn.conf.py``, + not with a hardcoded ``--workers ``. +4. ``Dockerfile.api`` actually COPYs ``gunicorn.conf.py`` into the image. +""" +from pathlib import Path +import sys +import types + +import pytest + + +REPO_ROOT = Path(__file__).resolve().parents[1] +GUNICORN_CONF = REPO_ROOT / "gunicorn.conf.py" + + +def _exec_gunicorn_conf(fake_config_module=None): + """Exec gunicorn.conf.py in an isolated namespace and return its globals. + + If ``fake_config_module`` is provided, register it as ``config`` in + ``sys.modules`` for the duration of the exec so the ``from config import + Config`` line inside gunicorn.conf.py picks it up. + """ + original = sys.modules.get("config") + try: + if fake_config_module is None: + sys.modules.pop("config", None) + else: + sys.modules["config"] = fake_config_module + namespace: dict = {} + exec(GUNICORN_CONF.read_text(), namespace) + return namespace + finally: + # Restore whatever was there (including absence). + if original is None: + sys.modules.pop("config", None) + else: + sys.modules["config"] = original + + +def _fake_config(**attrs): + mod = types.ModuleType("config") + + class Config: + pass + + for k, v in attrs.items(): + setattr(Config, k, v) + mod.Config = Config + return mod + + +def test_workers_reads_from_config_py(): + """Operator sets GUNICORN_WORKERS in config.py → gunicorn picks it up.""" + ns = _exec_gunicorn_conf(_fake_config(GUNICORN_WORKERS=4)) + assert ns["workers"] == 4 + + +def test_workers_defaults_to_one_when_attribute_missing(): + """config.py exists but doesn't define GUNICORN_WORKERS — fall back to 1.""" + ns = _exec_gunicorn_conf(_fake_config()) # no GUNICORN_WORKERS set + assert ns["workers"] == 1 + + +def test_workers_defaults_to_one_when_config_module_missing(): + """No config.py at all (e.g. fresh image, operator hasn't copied it yet). + Gunicorn must still boot.""" + ns = _exec_gunicorn_conf(fake_config_module=None) + assert ns["workers"] == 1 + + +def test_workers_coerces_string_to_int(): + """If GUNICORN_WORKERS reached config.py via os.environ.get (returning a + string), gunicorn.conf.py must still produce an int.""" + ns = _exec_gunicorn_conf(_fake_config(GUNICORN_WORKERS="3")) + assert ns["workers"] == 3 + assert isinstance(ns["workers"], int) + + +# --- Plumbing checks --------------------------------------------------------- + +def test_docker_compose_uses_gunicorn_conf_file(): + """The api service must invoke gunicorn with ``-c gunicorn.conf.py``, + not with a hardcoded ``--workers `` (would defeat the point).""" + text = (REPO_ROOT / "docker-compose.yml").read_text() + # Pull out the api command line. + assert "-c gunicorn.conf.py" in text, ( + "docker-compose.yml api command must use `-c gunicorn.conf.py`." + ) + # Ensure --workers isn't on the gunicorn command line anymore. + import re + leftover = re.search(r"gunicorn[^\n]*--workers\s+\S+", text) + assert not leftover, ( + f"docker-compose.yml still passes a hardcoded `--workers` to gunicorn: " + f"{leftover.group(0)!r}. Set GUNICORN_WORKERS in config.py instead." + ) + + +def test_dockerfile_api_copies_gunicorn_conf(): + """gunicorn.conf.py must end up inside the image, otherwise -c fails at + container start.""" + text = (REPO_ROOT / "Dockerfile.api").read_text() + assert "gunicorn.conf.py" in text, ( + "Dockerfile.api must COPY gunicorn.conf.py into the image." + ) From 6cb614984d6f597208005b33196a701ee7684f6b Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Thu, 28 May 2026 19:31:18 +0300 Subject: [PATCH 48/50] build: delete obsolete requirements-{api,cacher}.txt MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit These files predate the move to uv. Both Dockerfiles install via `uv sync --frozen` from uv.lock; nothing in the repo references the text pins (verified: `grep -rE 'requirements-(api|cacher)\.txt'` returns no consumers). The pin set was last touched in 2023 (Flask 2.3.2, gunicorn 20.1, obspy 1.3.1, redis 4.4.4) — all years behind the current uv.lock and the source of duplicated Dependabot alerts that artificially doubled the open-alert count on EIDA/ws-availability. Added `tests/test_docker_compose.py::test_no_stale_requirements_files` so a stray re-commit fails fast. 68/68 tests pass. --- requirements-api.txt | 6 ------ requirements-cacher.txt | 2 -- tests/test_docker_compose.py | 20 ++++++++++++++++++++ 3 files changed, 20 insertions(+), 8 deletions(-) delete mode 100644 requirements-api.txt delete mode 100644 requirements-cacher.txt diff --git a/requirements-api.txt b/requirements-api.txt deleted file mode 100644 index 9726874..0000000 --- a/requirements-api.txt +++ /dev/null @@ -1,6 +0,0 @@ -Flask==2.3.2 -pymongo==4.2.0 -requests==2.31.0 -obspy==1.3.1 -gunicorn==20.1.0 -redis==4.4.4 \ No newline at end of file diff --git a/requirements-cacher.txt b/requirements-cacher.txt deleted file mode 100644 index b6fa8d3..0000000 --- a/requirements-cacher.txt +++ /dev/null @@ -1,2 +0,0 @@ -obspy==1.3.1 -redis==4.4.4 \ No newline at end of file diff --git a/tests/test_docker_compose.py b/tests/test_docker_compose.py index 43b0028..6104337 100644 --- a/tests/test_docker_compose.py +++ b/tests/test_docker_compose.py @@ -104,3 +104,23 @@ def test_beta_md_example_snippets_use_safe_getter_pattern(): f"BETA.md uses the leaky `os.environ.get(...) or X` pattern in " f"{len(bad)} place(s): {bad}. Use `os.environ.get('X', X)` instead." ) + + +# --- Single source of truth for deps ---------------------------------------- + +REPO_ROOT = Path(__file__).resolve().parents[1] + + +def test_no_stale_requirements_files(): + """Dependency pins live in uv.lock (built from pyproject.toml). + The old hand-maintained `requirements-api.txt` / `requirements-cacher.txt` + were obsolete pin sets (Flask 2.3.2, gunicorn 20.1, etc.) that Dependabot + still scanned — they inflated the alert count with duplicates and led + new contributors to wonder which lockfile was canonical.""" + for stale in ("requirements-api.txt", "requirements-cacher.txt"): + assert not (REPO_ROOT / stale).exists(), ( + f"{stale} is back. Deps belong in pyproject.toml + uv.lock; " + f"the Dockerfiles install via `uv sync --frozen`. If you really " + f"need a pip-format lockfile, generate it with `uv export` at " + f"build time instead of hand-maintaining a parallel one." + ) From 7a70603a7164f598fe613ba2507b124f656fe042 Mon Sep 17 00:00:00 2001 From: Nikos Sokos Date: Thu, 28 May 2026 19:36:38 +0300 Subject: [PATCH 49/50] =?UTF-8?q?build:=20uv=20lock=20--upgrade=20?= =?UTF-8?q?=E2=80=94=20refresh=20transitives,=20no=20security=20gap?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Outcome of the Step-7 audit: every package the EIDA repo's Dependabot currently flags is *already* at a patched version in this branch's uv.lock (refreshed during the Python 3.13 upgrade earlier in the beta cycle). The 23 unique uv.lock alerts upstream scan EIDA/master, not this branch — they should resolve themselves when the beta merges. Ran `uv lock --upgrade` anyway to pick up newer patch releases: coverage 7.14.0 → 7.14.1 idna 3.16 → 3.17 redis 7.4.0 → 8.0.0 (major; ours is the redis-py client only) sentry-sdk 2.60.0 → 2.61.0 sqlalchemy 2.0.49 → 2.0.50 Verified after `uv sync`: - 68/68 tests pass with the upgraded venv - apps.redis_client.RedisClient imports and instantiates against redis 8.0 - No API surface changes our usage relies on Per-alert verification table (current vs first patched): idna 3.17 ≥ 3.15 ✓ urllib3 2.7.0 ≥ 2.7.0 ✓ pillow 12.2.0 ≥ 12.2.0 ✓ lxml 6.1.1 ≥ 6.1.0 ✓ python-dotenv 1.2.2 ≥ 1.2.2 ✓ pytest 9.0.3 ≥ 9.0.3 ✓ pygments 2.20.0 ≥ 2.20.0 ✓ requests 2.34.2 ≥ 2.33.0 ✓ werkzeug 3.1.8 ≥ 3.1.6 ✓ flask 3.1.3 ≥ 3.1.3 ✓ gunicorn 26.0.0 ≥ 22.0.0 ✓ pymongo 4.17.0 ≥ 4.6.3 ✓ --- uv.lock | 197 +++++++++++++++++++++++++++----------------------------- 1 file changed, 96 insertions(+), 101 deletions(-) diff --git a/uv.lock b/uv.lock index a336790..3000bc9 100644 --- a/uv.lock +++ b/uv.lock @@ -176,71 +176,71 @@ 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service 1.0](http://www.fds It runs as three Docker containers: the **API** (Flask + gunicorn, port 9001), a **Redis** cache, and a **cacher** that keeps the restriction inventory and the `availability` view up to date on a built-in daily schedule. -> **Installing or upgrading to v1.1.0-beta.1?** Follow [`BETA.md`](BETA.md) for the exact commands. +> **Upgrading from v1.0.x?** Follow [`BETA.md`](BETA.md) for the exact upgrade steps (config.py changes, the in-app scheduler replacing host cron). ## Deployment @@ -28,7 +28,7 @@ docker-compose up -d --build ### Option B — Pull pre-built images -Each **tagged release** publishes images to GHCR, so you can skip the build. Replace `` with a release tag (e.g. `1.1.0`): +Each **tagged release** publishes images to GHCR, so you can skip the build. Replace `` with a release tag (e.g. `1.1.0`, or `1.1` for the latest 1.1.x): ```yaml # docker-compose.override.yml @@ -44,12 +44,12 @@ docker-compose pull docker-compose up -d ``` -> Pre-built images exist only for tagged releases. The current beta ships as a branch, so use Option A (build locally) for it — see [`BETA.md`](BETA.md). +> Pre-built images exist only for tagged releases. To build from an untagged branch instead, use Option A (build locally). Either way, three containers come up. Check it: ```bash -curl "127.0.0.1:9001/version" # -> 1.1.0-beta.1 +curl "127.0.0.1:9001/version" # -> 1.1.0 curl "127.0.0.1:9001/extent?net=NA&start=2023-02-01" ``` diff --git a/apps/globals.py b/apps/globals.py index 59cbaa7..949cf2a 100644 --- a/apps/globals.py +++ b/apps/globals.py @@ -38,7 +38,7 @@ # error message constants DOCUMENTATION_URI = "http://www.fdsn.org/webservices/fdsnws-availability-1.0.pdf" SERVICE = "fdsnws-availability" -VERSION = "1.1.0-beta.1" +VERSION = "1.1.0" class Error: diff --git a/pyproject.toml b/pyproject.toml index 8e1860b..8223da8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta" [project] name = "ws-availability" -version = "1.1.0b1" +version = "1.1.0" description = "Add your description here" readme = "README.md" requires-python = ">=3.13"