cn_salmon

[gloriafight]

The error is below.I want to know how to solve it.Thank you.
determining read length
Trimming reads
sh: 1: parallel: not found
Salmon
sh: 1: parallel: not found
rm: cannot remove '*trimmed.fq': No such file or directory
./salmonRes_SRR1501367/quant.sf
Error in file(file, "rt") : cannot open the connection
In addition: Warning messages:
1: In system(cmd) : error in running command
2: In system(cmd) : error in running command
3: In file(file, "rt") :
cannot open file './salmonRes_SRR1501367/quant.sf': No such file or directory.

[pcahan1]

We have now created a web application that takes as input an expression matrix (counts, TPM, or FPKM), and sample meta-data, and performs CellNet analysis. Additionally, this tool includes analysis of many state-of-the-art differentiation protocols, so that you can benchmark your results against those commonly used methds:

https://cahanlab.org/resources/agnosticCellNet_web/