From 4a2af4395a25f4af83122636fd9a31ded07518ed Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sat, 25 Jul 2026 16:32:07 -0700
Subject: [PATCH 01/21] docs: add CONTRIBUTING.md

Contributing guidelines tailored to the UC Irvine / Cyber@UCI research context: branching conventions, Conventional Commits format, PR process, test markers, and per-area project map.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 CONTRIBUTING.md | 175 ++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 175 insertions(+)
 create mode 100644 CONTRIBUTING.md

diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
new file mode 100644
index 0000000..d68fc4c
--- /dev/null
+++ b/CONTRIBUTING.md
@@ -0,0 +1,175 @@
+# Contributing to Game of Everything
+
+Game of Everything is an open-source research project developed at **UC Irvine**, maintained by faculty and student members of [Cyber@UCI](https://cyberatuci.com). We welcome contributions from the broader community — whether you are fixing a bug, adding a new atom, or improving documentation.
+
+---
+
+## Table of Contents
+
+- [Code of Conduct](#code-of-conduct)
+- [Getting Started](#getting-started)
+- [Reporting Issues](#reporting-issues)
+- [Contributing Changes](#contributing-changes)
+  - [Branching](#branching)
+  - [Commit Messages](#commit-messages)
+  - [Pull Requests](#pull-requests)
+- [Development Setup](#development-setup)
+- [Running Tests](#running-tests)
+- [Project Areas](#project-areas)
+- [Research & Attribution](#research--attribution)
+
+---
+
+## Code of Conduct
+
+This project is a research and educational effort. All contributors are expected to engage respectfully and constructively. Harassment, discrimination, or hostile behavior of any kind will not be tolerated.
+
+---
+
+## Getting Started
+
+1. **Fork** the repository and clone your fork locally.
+2. Follow the [setup instructions in the README](README.md#installation) to install dependencies and configure your environment.
+3. Confirm your setup works by running the test suite (see [Running Tests](#running-tests)).
+4. Find something to work on — open issues, items labeled `good first issue`, or reach out to a maintainer.
+
+---
+
+## Reporting Issues
+
+Before opening a new issue, search existing issues to avoid duplicates.
+
+When filing a bug, include:
+- A clear, descriptive title
+- Steps to reproduce (including the prompt/scenario used if applicable)
+- Expected vs. actual behavior
+- Relevant log output (found in `output/<timestamp>.log`) — redact any credentials or AWS keys
+- Environment: OS, Python version, Docker version, AWS region
+
+For feature requests, describe the use case and the problem it solves rather than jumping straight to a proposed solution.
+
+---
+
+## Contributing Changes
+
+### Branching
+
+Branch off `main` for new work. Use the same `type/short-description` pattern used elsewhere in this repo:
+
+```
+feat/add-postgres-atom
+fix/chain-test-edge-propagation
+docs/update-contributing
+chore/bump-boto3
+```
+
+### Commit Messages
+
+Follow the [Conventional Commits](https://www.conventionalcommits.org/) format already established in this repository:
+
+```
+type(scope): short imperative description
+```
+
+| Type | When to use |
+|---|---|
+| `feat` | New feature or capability |
+| `fix` | Bug fix |
+| `docs` | Documentation only |
+| `test` | Adding or updating tests |
+| `refactor` | Code restructure with no behavior change |
+| `chore` | Build, deps, tooling, CI |
+
+**Examples from this repo:**
+```
+feat(tui): tui added + diagnostician improvements
+fix(attacker_container): ensure attacker container has necessary tools for testing loop
+docs(CLAUDE.md): update for Phase 4 completion + Phase 5 roadmap
+test(procedures): tests for basic execution, SSH logins, step chaining, and SUID privesc
+```
+
+Keep the subject line under 72 characters. Use the body for _why_, not _what_.
+
+### Pull Requests
+
+- Target `main` unless a maintainer directs otherwise.
+- PR titles follow the same `type(scope): description` format as commits.
+- Keep PRs focused — one logical change per PR.
+- Fill out the PR description with a summary of what changed and why.
+- All CI checks must pass before review.
+- At least one maintainer approval is required to merge.
+
+For large changes (new pipeline phase, new runtime, significant refactor), open an issue or draft PR first to discuss the approach before investing significant time.
+
+---
+
+## Development Setup
+
+```bash
+cd game_of_everything
+uv sync
+source .venv/bin/activate
+```
+
+Configure your environment:
+
+```bash
+cp goe.toml.example goe.toml
+# Fill in AWS credentials and model settings
+```
+
+Verify Bedrock access and ingest the RAG atom database before running the full pipeline:
+
+```bash
+python scripts/bedrock_access.py
+python scripts/rag_gen.py
+```
+
+See the [README](README.md) for full setup and command documentation.
+
+---
+
+## Running Tests
+
+The test suite is split by marker to separate fast unit tests from slow Docker/LLM tests:
+
+```bash
+# Fast unit tests (no Docker, no AWS)
+.venv/bin/python -m pytest -m "not docker and not llm"
+
+# Docker integration tests (~1-3 min each)
+.venv/bin/python -m pytest -m docker
+
+# Full suite (requires Docker + AWS credentials)
+.venv/bin/python -m pytest tests/
+```
+
+New features should include corresponding tests. Bug fixes should include a test that would have caught the bug.
+
+---
+
+## Project Areas
+
+| Area | Location | Notes |
+|---|---|---|
+| v2 planner | `goe/planner/` | NL → EntityGraph; LLM prompts in `prompts/` |
+| v2 construction crew | `goe/construction_crew/` | Engineer / Developer / Attacker agents |
+| v2 flow & orchestration | `goe/flow/` | Run/resume pipeline, chain test |
+| v2 retry & diagnostics | `goe/retry/` | Failure categorization and agent routing |
+| Misconfig/privesc atoms | `atoms/` | Markdown + YAML frontmatter |
+| Web vulnerability atoms | `atoms/web_vulnerabilities/` | Markdown + YAML frontmatter |
+| Runtime templates | `goe/runtimes/templates/` | Per-runtime install/start/healthcheck |
+| Docker images | `docker/` | Target and attacker Dockerfiles |
+| v1 system (legacy) | `src/game_of_everything/` | crewAI-based; maintained but not actively extended |
+
+When adding a new atom or runtime, follow the patterns documented in [CLAUDE.md](game_of_everything/CLAUDE.md).
+
+---
+
+## Research & Attribution
+
+Game of Everything is developed as part of ongoing cybersecurity research at **UC Irvine**. Student contributors through [Cyber@UCI](https://cyberatuci.com) are the primary maintainers.
+
+If you use this project in academic work, please cite it appropriately and reach out to the maintainers — we welcome collaboration and co-authorship opportunities with researchers building on this work.
+
+Contributions are accepted under the project's [GPLv3 license](LICENSE). By submitting a pull request you agree that your contributions will be licensed under the same terms.

From 420b335eaa494f7080e2127c6fe4fffaacefa30a Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sat, 25 Jul 2026 17:19:19 -0700
Subject: [PATCH 02/21] fix(install): rag_gen robustness + Docker image caching
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

rag_gen.py: print a clear error when goe.toml is missing instead of
raising FileNotFoundError; skip passing empty-string credentials to
boto3.Session so the default credential chain is used correctly.

test_environment.py: check image existence before building attacker,
target, and browser images in setup() — skips multi-minute rebuilds
when the image is already present locally.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 game_of_everything/scripts/rag_gen.py         | 22 ++++++---
 .../tools/test_environment.py                 | 48 ++++++++++++-------
 2 files changed, 46 insertions(+), 24 deletions(-)

diff --git a/game_of_everything/scripts/rag_gen.py b/game_of_everything/scripts/rag_gen.py
index 29742fe..5f205e6 100644
--- a/game_of_everything/scripts/rag_gen.py
+++ b/game_of_everything/scripts/rag_gen.py
@@ -17,14 +17,24 @@
 # grab aws keys/data from goe.toml
 
 import tomllib
-with open(PROJECT_DIR / "goe.toml", 'rb') as f:
+
+toml_path = PROJECT_DIR / "goe.toml"
+if not toml_path.exists():
+    print("Error: goe.toml not found. Run: cp goe.toml.example goe.toml")
+    raise SystemExit(1)
+
+with open(toml_path, 'rb') as f:
     data = tomllib.load(f)
 
-aws_session = boto3.Session(
-    aws_access_key_id=data['aws']['access_key_id'],
-    aws_secret_access_key=data['aws']['secret_access_key'],
-    region_name=os.getenv("AWS_REGION", "us-east-1"),
-)
+aws_cfg = data.get('aws', {})
+session_kwargs: dict = {"region_name": os.getenv("AWS_REGION", aws_cfg.get("region", "us-east-1"))}
+key_id = aws_cfg.get("access_key_id", "")
+secret = aws_cfg.get("secret_access_key", "")
+if key_id and secret:
+    session_kwargs["aws_access_key_id"] = key_id
+    session_kwargs["aws_secret_access_key"] = secret
+
+aws_session = boto3.Session(**session_kwargs)
 
 bedrock_ef = AmazonBedrockEmbeddingFunction(
     session=aws_session,
diff --git a/game_of_everything/src/game_of_everything/tools/test_environment.py b/game_of_everything/src/game_of_everything/tools/test_environment.py
index c4101c1..e25c00c 100644
--- a/game_of_everything/src/game_of_everything/tools/test_environment.py
+++ b/game_of_everything/src/game_of_everything/tools/test_environment.py
@@ -275,9 +275,13 @@ def setup(self) -> None:
                         dockerfile_dir = info["dockerfile_dir"]
                         break
             if dockerfile_dir:
-                logger.info(f"Building target image {self._target_image} from {dockerfile_dir}...")
-                self.client.images.build(path=dockerfile_dir, tag=self._target_image, rm=True)
-                logger.info(f"Built target image: {self._target_image}")
+                try:
+                    self.client.images.get(self._target_image)
+                    logger.info(f"Target image {self._target_image} already exists — skipping build.")
+                except Exception:
+                    logger.info(f"Building target image {self._target_image} from {dockerfile_dir}...")
+                    self.client.images.build(path=dockerfile_dir, tag=self._target_image, rm=True)
+                    logger.info(f"Built target image: {self._target_image}")
 
         # Start target container
         port_bindings = {f"{cp}/tcp": hp for cp, hp in self._expose_ports.items()} if self._expose_ports else None
@@ -309,14 +313,18 @@ def setup(self) -> None:
         else:
             logger.info("Skipping bootstrap — pre-built target image already has base tools.")
 
-        # Build the attacker image from the Kali Dockerfile
-        logger.info(f"Building attacker image from {ATTACKER_DOCKERFILE_DIR}...")
-        self.client.images.build(
-            path=ATTACKER_DOCKERFILE_DIR,
-            tag=ATTACKER_IMAGE_TAG,
-            rm=True,
-        )
-        logger.info(f"Built attacker image: {ATTACKER_IMAGE_TAG}")
+        # Build the attacker image only if it doesn't already exist locally
+        try:
+            self.client.images.get(ATTACKER_IMAGE_TAG)
+            logger.info(f"Attacker image {ATTACKER_IMAGE_TAG} already exists — skipping build.")
+        except Exception:
+            logger.info(f"Building attacker image from {ATTACKER_DOCKERFILE_DIR}...")
+            self.client.images.build(
+                path=ATTACKER_DOCKERFILE_DIR,
+                tag=ATTACKER_IMAGE_TAG,
+                rm=True,
+            )
+            logger.info(f"Built attacker image: {ATTACKER_IMAGE_TAG}")
 
         # Start attacker container on the same network
         self.attacker_container = self.client.containers.run(
@@ -332,13 +340,17 @@ def setup(self) -> None:
 
         # Start browser sidecar if requested
         if self._enable_browser:
-            logger.info(f"Building browser image from {BROWSER_DOCKERFILE_DIR}...")
-            self.client.images.build(
-                path=BROWSER_DOCKERFILE_DIR,
-                tag=BROWSER_IMAGE_TAG,
-                rm=True,
-            )
-            logger.info(f"Built browser image: {BROWSER_IMAGE_TAG}")
+            try:
+                self.client.images.get(BROWSER_IMAGE_TAG)
+                logger.info(f"Browser image {BROWSER_IMAGE_TAG} already exists — skipping build.")
+            except Exception:
+                logger.info(f"Building browser image from {BROWSER_DOCKERFILE_DIR}...")
+                self.client.images.build(
+                    path=BROWSER_DOCKERFILE_DIR,
+                    tag=BROWSER_IMAGE_TAG,
+                    rm=True,
+                )
+                logger.info(f"Built browser image: {BROWSER_IMAGE_TAG}")
 
             # Pick a free host port for CDP endpoint
             import socket

From 1d591d2afb58feed05c6959b1b7082d66f8cf82b Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 02:43:15 -0700
Subject: [PATCH 03/21] docs: edit CONTRIBUTING.md

---
 CONTRIBUTING.md | 13 +++++--------
 1 file changed, 5 insertions(+), 8 deletions(-)

diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index d68fc4c..695d824 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -1,6 +1,6 @@
 # Contributing to Game of Everything
 
-Game of Everything is an open-source research project developed at **UC Irvine**, maintained by faculty and student members of [Cyber@UCI](https://cyberatuci.com). We welcome contributions from the broader community — whether you are fixing a bug, adding a new atom, or improving documentation.
+We welcome contributions from the broader community — whether you are fixing a bug, adding a new atom, or improving documentation.
 
 ---
 
@@ -152,15 +152,14 @@ New features should include corresponding tests. Bug fixes should include a test
 
 | Area | Location | Notes |
 |---|---|---|
-| v2 planner | `goe/planner/` | NL → EntityGraph; LLM prompts in `prompts/` |
-| v2 construction crew | `goe/construction_crew/` | Engineer / Developer / Attacker agents |
-| v2 flow & orchestration | `goe/flow/` | Run/resume pipeline, chain test |
-| v2 retry & diagnostics | `goe/retry/` | Failure categorization and agent routing |
+| planner | `goe/planner/` | NL → EntityGraph; LLM prompts in `prompts/` |
+| construction crew | `goe/construction_crew/` | Engineer / Developer / Attacker agents |
+| flow & orchestration | `goe/flow/` | Run/resume pipeline, chain test |
+| retry & diagnostics | `goe/retry/` | Failure categorization and agent routing |
 | Misconfig/privesc atoms | `atoms/` | Markdown + YAML frontmatter |
 | Web vulnerability atoms | `atoms/web_vulnerabilities/` | Markdown + YAML frontmatter |
 | Runtime templates | `goe/runtimes/templates/` | Per-runtime install/start/healthcheck |
 | Docker images | `docker/` | Target and attacker Dockerfiles |
-| v1 system (legacy) | `src/game_of_everything/` | crewAI-based; maintained but not actively extended |
 
 When adding a new atom or runtime, follow the patterns documented in [CLAUDE.md](game_of_everything/CLAUDE.md).
 
@@ -168,8 +167,6 @@ When adding a new atom or runtime, follow the patterns documented in [CLAUDE.md]
 
 ## Research & Attribution
 
-Game of Everything is developed as part of ongoing cybersecurity research at **UC Irvine**. Student contributors through [Cyber@UCI](https://cyberatuci.com) are the primary maintainers.
-
 If you use this project in academic work, please cite it appropriately and reach out to the maintainers — we welcome collaboration and co-authorship opportunities with researchers building on this work.
 
 Contributions are accepted under the project's [GPLv3 license](LICENSE). By submitting a pull request you agree that your contributions will be licensed under the same terms.

From 171b2e49924b3033901cb11af88c305c0e00208b Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 11:26:56 -0700
Subject: [PATCH 04/21] docs(README): fix broken commands, bedrock invocation,
 and stale claims
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

- bedrock_access.py: fix section heading ("Verify" → "Enable") and show
  the correct invocation with model IDs as positional args
- Docker image management: replace broken build_attacker_image command
  with the correct build_attacker entry point; remove false "7-day
  cache" claim — images skip rebuild when already present locally
- EC2 instance type default: correct t3.medium → t3.small to match
  actual CLI defaults in kickoff() and deploy_from_output()

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 README.md | 17 +++++++++++------
 1 file changed, 11 insertions(+), 6 deletions(-)

diff --git a/README.md b/README.md
index c3d1ec2..e7dcb76 100644
--- a/README.md
+++ b/README.md
@@ -76,10 +76,15 @@ subnet_id         = ""        # auto-selected if blank
 
 Environment variables override toml values: `AWS_ACCESS_KEY_ID`, `AWS_SECRET_ACCESS_KEY`, `AWS_REGION`, `GOE_DEFAULT_MODEL`, `GOE_MODEL_<AGENT_NAME>`.
 
-### Verify Bedrock Access
+### Enable Bedrock Model Access
+
+Run this once per AWS account to accept model agreements and request entitlements:
 
 ```bash
-python scripts/bedrock_access.py
+python scripts/bedrock_access.py \
+  us.anthropic.claude-sonnet-4-6-20251001-v1:0 \
+  us.anthropic.claude-opus-4-6-v1:0 \
+  amazon.titan-embed-text-v2:0
 ```
 
 ---
@@ -130,7 +135,7 @@ crewai run
 | `--deploy ec2` | — | After generation, deploy the scenario to AWS EC2 |
 | `--review` | off | After script generation, pause for interactive per-box review before deploying |
 | `--ec2-region REGION` | `us-east-1` | AWS region for EC2 deployment |
-| `--ec2-instance-type TYPE` | `t3.medium` | EC2 instance type |
+| `--ec2-instance-type TYPE` | `t3.small` | EC2 instance type |
 | `--ec2-attacker-cidr CIDR` | `$GOE_ATTACKER_CIDR` | Your IP in CIDR notation — required for `--deploy ec2` |
 | `--ec2-ttl-hours N` | `4` | Auto-destroy TTL in hours (`0` = no auto-destroy) |
 
@@ -164,7 +169,7 @@ goe-deploy output/20260418_200538_<scenario_slug> --attacker-cidr 203.0.113.5/32
 |---|---|
 | `output_dir` (positional) | Path to the output directory containing `playbook.json` and `*_deploy.sh` files |
 | `--region REGION` | AWS region (default: `$GOE_EC2_REGION` or `us-east-1`) |
-| `--instance-type TYPE` | EC2 instance type (default: `$GOE_EC2_INSTANCE_TYPE` or `t3.medium`) |
+| `--instance-type TYPE` | EC2 instance type (default: `$GOE_EC2_INSTANCE_TYPE` or `t3.small`) |
 | `--attacker-cidr CIDR` | Your IP in CIDR notation — required |
 | `--ttl-hours N` | Auto-destroy TTL in hours (default: `$GOE_EC2_TTL_HOURS` or `4`) |
 
@@ -200,10 +205,10 @@ plot
 Pre-build the attacker container to separate build failures from test failures:
 
 ```bash
-python -m game_of_everything.main build_attacker_image
+build_attacker
 ```
 
-Per-runtime target images (`goe-target-express`, `goe-target-flask`, `goe-target-php`) and the browser sidecar image (`goe-browser`) are built automatically on first use. Images are cached for 7 days.
+All images (`goe-attacker`, `goe-target-express`, `goe-target-flask`, `goe-target-php`, `goe-browser`) are built on first use and skipped on subsequent runs if they already exist locally.
 
 ---
 

From bb7828c698295638ce749ff9e9e06bc16eae9a67 Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 11:29:25 -0700
Subject: [PATCH 05/21] fix(config): update goe.toml.example with correct model
 IDs and role overrides

Use the full cross-region inference profile ID format for the default
model. Replace the old per-agent v1 override keys with the current
per-role keys (planner, engineer, developer, attacker, diagnostician,
chain_attacker).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 game_of_everything/goe.toml.example | 28 +++++++++++-----------------
 1 file changed, 11 insertions(+), 17 deletions(-)

diff --git a/game_of_everything/goe.toml.example b/game_of_everything/goe.toml.example
index 0b0f3f5..16e0a44 100644
--- a/game_of_everything/goe.toml.example
+++ b/game_of_everything/goe.toml.example
@@ -12,25 +12,19 @@ secret_access_key = ""
 region = "us-east-1"
 
 [models]
-# Default Bedrock model ID used when an agent has no explicit override.
-# The "us." inference-profile prefix is added automatically by llm_factory.
-default = "anthropic.claude-sonnet-4-6"
+# Default Bedrock model ID. Use the full cross-region inference profile ID:
+#   e.g. "us.anthropic.claude-sonnet-4-6-20251001-v1:0"
+default = "us.anthropic.claude-sonnet-4-6-20251001-v1:0"
 
 [models.overrides]
-# Per-agent model overrides. Keys must match agent names in config/agents.yaml.
-# Uncomment to override a specific agent; otherwise the defaults from
-# config/models.yaml (Opus for app_generation_agent, Sonnet for attack_agent)
-# are used.
-# request_parser_agent          = "anthropic.claude-haiku-3-5"
-# mapping_agent                 = "anthropic.claude-sonnet-4-6"
-# mapping_validator_agent       = "anthropic.claude-haiku-3-5"
-# dependency_enumeration_agent  = "anthropic.claude-haiku-3-5"
-# sequencing_agent              = "anthropic.claude-haiku-3-5"
-# snippet_generation_agent      = "anthropic.claude-sonnet-4-6"
-# testing_agent                 = "anthropic.claude-haiku-3-5"
-# diagnostic_agent              = "anthropic.claude-sonnet-4-6"
-# app_generation_agent          = "anthropic.claude-opus-4-6-v1"
-# attack_agent                  = "anthropic.claude-sonnet-4-6"
+# Per-role model overrides. Keys match role names in goe/config.py.
+# Uncomment to override a specific role; otherwise [models].default is used.
+# planner        = "us.anthropic.claude-sonnet-4-6-20251001-v1:0"
+# engineer       = "us.anthropic.claude-opus-4-6-v1:0"
+# developer      = "us.anthropic.claude-sonnet-4-6-20251001-v1:0"
+# attacker       = "us.anthropic.claude-sonnet-4-6-20251001-v1:0"
+# diagnostician  = "us.anthropic.claude-sonnet-4-6-20251001-v1:0"
+# chain_attacker = "us.anthropic.claude-sonnet-4-6-20251001-v1:0"
 
 [deploy]
 # EC2 one-click deploy settings used by steps/deploy.py + ec2_deploy.py.

From aff9312cdec2695d000ce499b3b2b4c2ed6d4481 Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 16:29:30 -0700
Subject: [PATCH 06/21] docs: reorganize documentation into structured layout
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Consolidates all docs into a single docs/ tree at the repo root:
- docs/architecture/ — stable v2 design specs (entity graph, build spec, impl plan)
- docs/design/ — feature design docs (custom apps, multi-box, browser use, preset apps)
- docs/eval/ — eval system reference (overview, quick ref, LLM judge, planning evals)
- docs/samples/ — sample requests
- docs/notes/ — archived session/working notes

Moves AGENT.md and CLAUDE.md to repo root for visibility; adds working-directory
note to CLAUDE.md since commands are relative to game_of_everything/. Updates
CONTRIBUTING.md link to match new CLAUDE.md location.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 game_of_everything/AGENT.md => AGENT.md                         | 0
 game_of_everything/CLAUDE.md => CLAUDE.md                       | 2 ++
 CONTRIBUTING.md                                                 | 2 +-
 .../docs/rewrite => docs/architecture}/entity_graph_model.md    | 0
 .../architecture/v2_implementation_plan.md                      | 0
 .../docs/rewrite/goe_rewrite.md => docs/architecture/v2_spec.md | 0
 {game_of_everything/docs => docs/design}/browser_use.md         | 0
 docs/{custom_apps_design.md => design/custom_apps.md}           | 0
 .../multi_box_design.md => docs/design/multi_box_topology.md    | 0
 .../docs/preset_apps_plan.md => docs/design/preset_apps.md      | 0
 .../goe/eval/LLM_JUDGE_GUIDE.md => docs/eval/llm_judge.md       | 0
 game_of_everything/EVAL_SYSTEM.md => docs/eval/overview.md      | 0
 .../EVAL_QUICK_REF.md => docs/eval/quick_reference.md           | 0
 .../eval/understanding_planning.md                              | 0
 {game_of_everything/goe/eval => docs/notes}/BUGFIX_PYDANTIC.md  | 0
 {game_of_everything => docs/notes}/DIAGNOSTICS_IMPROVEMENTS.md  | 0
 {game_of_everything => docs/notes}/EVAL_FINAL_SUMMARY.md        | 0
 {game_of_everything => docs/notes}/EVAL_IMPROVEMENTS.md         | 0
 {game_of_everything => docs/notes}/EVAL_TEST_RESULTS.md         | 0
 {game_of_everything => docs/notes}/FIXES_SUMMARY.md             | 0
 {game_of_everything/docs => docs/notes}/phase1_complete.md      | 0
 .../docs => docs/notes}/phase2_bedrock_tool_blocker.md          | 0
 .../docs => docs/notes}/phase2_implementation_summary.md        | 0
 {game_of_everything/docs => docs/notes}/phase2_status.md        | 0
 docs/{ => samples}/requests.md                                  | 0
 25 files changed, 3 insertions(+), 1 deletion(-)
 rename game_of_everything/AGENT.md => AGENT.md (100%)
 rename game_of_everything/CLAUDE.md => CLAUDE.md (99%)
 rename {game_of_everything/docs/rewrite => docs/architecture}/entity_graph_model.md (100%)
 rename game_of_everything/docs/rewrite/implementation_plan.md => docs/architecture/v2_implementation_plan.md (100%)
 rename game_of_everything/docs/rewrite/goe_rewrite.md => docs/architecture/v2_spec.md (100%)
 rename {game_of_everything/docs => docs/design}/browser_use.md (100%)
 rename docs/{custom_apps_design.md => design/custom_apps.md} (100%)
 rename game_of_everything/docs/multi_box_design.md => docs/design/multi_box_topology.md (100%)
 rename game_of_everything/docs/preset_apps_plan.md => docs/design/preset_apps.md (100%)
 rename game_of_everything/goe/eval/LLM_JUDGE_GUIDE.md => docs/eval/llm_judge.md (100%)
 rename game_of_everything/EVAL_SYSTEM.md => docs/eval/overview.md (100%)
 rename game_of_everything/EVAL_QUICK_REF.md => docs/eval/quick_reference.md (100%)
 rename game_of_everything/goe/eval/UNDERSTANDING_PLANNING_EVALS.md => docs/eval/understanding_planning.md (100%)
 rename {game_of_everything/goe/eval => docs/notes}/BUGFIX_PYDANTIC.md (100%)
 rename {game_of_everything => docs/notes}/DIAGNOSTICS_IMPROVEMENTS.md (100%)
 rename {game_of_everything => docs/notes}/EVAL_FINAL_SUMMARY.md (100%)
 rename {game_of_everything => docs/notes}/EVAL_IMPROVEMENTS.md (100%)
 rename {game_of_everything => docs/notes}/EVAL_TEST_RESULTS.md (100%)
 rename {game_of_everything => docs/notes}/FIXES_SUMMARY.md (100%)
 rename {game_of_everything/docs => docs/notes}/phase1_complete.md (100%)
 rename {game_of_everything/docs => docs/notes}/phase2_bedrock_tool_blocker.md (100%)
 rename {game_of_everything/docs => docs/notes}/phase2_implementation_summary.md (100%)
 rename {game_of_everything/docs => docs/notes}/phase2_status.md (100%)
 rename docs/{ => samples}/requests.md (100%)

diff --git a/game_of_everything/AGENT.md b/AGENT.md
similarity index 100%
rename from game_of_everything/AGENT.md
rename to AGENT.md
diff --git a/game_of_everything/CLAUDE.md b/CLAUDE.md
similarity index 99%
rename from game_of_everything/CLAUDE.md
rename to CLAUDE.md
index 580b0d4..8964201 100644
--- a/game_of_everything/CLAUDE.md
+++ b/CLAUDE.md
@@ -2,6 +2,8 @@
 
 Guidance for Claude Code when working with this repository.
 
+> **Working directory**: all commands below are relative to `game_of_everything/` unless noted otherwise.
+
 ---
 
 ## GoE v2 (`goe/`) — Active Development Branch: `goe-rewrite`
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index 695d824..f00ed79 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -161,7 +161,7 @@ New features should include corresponding tests. Bug fixes should include a test
 | Runtime templates | `goe/runtimes/templates/` | Per-runtime install/start/healthcheck |
 | Docker images | `docker/` | Target and attacker Dockerfiles |
 
-When adding a new atom or runtime, follow the patterns documented in [CLAUDE.md](game_of_everything/CLAUDE.md).
+When adding a new atom or runtime, follow the patterns documented in [CLAUDE.md](CLAUDE.md).
 
 ---
 
diff --git a/game_of_everything/docs/rewrite/entity_graph_model.md b/docs/architecture/entity_graph_model.md
similarity index 100%
rename from game_of_everything/docs/rewrite/entity_graph_model.md
rename to docs/architecture/entity_graph_model.md
diff --git a/game_of_everything/docs/rewrite/implementation_plan.md b/docs/architecture/v2_implementation_plan.md
similarity index 100%
rename from game_of_everything/docs/rewrite/implementation_plan.md
rename to docs/architecture/v2_implementation_plan.md
diff --git a/game_of_everything/docs/rewrite/goe_rewrite.md b/docs/architecture/v2_spec.md
similarity index 100%
rename from game_of_everything/docs/rewrite/goe_rewrite.md
rename to docs/architecture/v2_spec.md
diff --git a/game_of_everything/docs/browser_use.md b/docs/design/browser_use.md
similarity index 100%
rename from game_of_everything/docs/browser_use.md
rename to docs/design/browser_use.md
diff --git a/docs/custom_apps_design.md b/docs/design/custom_apps.md
similarity index 100%
rename from docs/custom_apps_design.md
rename to docs/design/custom_apps.md
diff --git a/game_of_everything/docs/multi_box_design.md b/docs/design/multi_box_topology.md
similarity index 100%
rename from game_of_everything/docs/multi_box_design.md
rename to docs/design/multi_box_topology.md
diff --git a/game_of_everything/docs/preset_apps_plan.md b/docs/design/preset_apps.md
similarity index 100%
rename from game_of_everything/docs/preset_apps_plan.md
rename to docs/design/preset_apps.md
diff --git a/game_of_everything/goe/eval/LLM_JUDGE_GUIDE.md b/docs/eval/llm_judge.md
similarity index 100%
rename from game_of_everything/goe/eval/LLM_JUDGE_GUIDE.md
rename to docs/eval/llm_judge.md
diff --git a/game_of_everything/EVAL_SYSTEM.md b/docs/eval/overview.md
similarity index 100%
rename from game_of_everything/EVAL_SYSTEM.md
rename to docs/eval/overview.md
diff --git a/game_of_everything/EVAL_QUICK_REF.md b/docs/eval/quick_reference.md
similarity index 100%
rename from game_of_everything/EVAL_QUICK_REF.md
rename to docs/eval/quick_reference.md
diff --git a/game_of_everything/goe/eval/UNDERSTANDING_PLANNING_EVALS.md b/docs/eval/understanding_planning.md
similarity index 100%
rename from game_of_everything/goe/eval/UNDERSTANDING_PLANNING_EVALS.md
rename to docs/eval/understanding_planning.md
diff --git a/game_of_everything/goe/eval/BUGFIX_PYDANTIC.md b/docs/notes/BUGFIX_PYDANTIC.md
similarity index 100%
rename from game_of_everything/goe/eval/BUGFIX_PYDANTIC.md
rename to docs/notes/BUGFIX_PYDANTIC.md
diff --git a/game_of_everything/DIAGNOSTICS_IMPROVEMENTS.md b/docs/notes/DIAGNOSTICS_IMPROVEMENTS.md
similarity index 100%
rename from game_of_everything/DIAGNOSTICS_IMPROVEMENTS.md
rename to docs/notes/DIAGNOSTICS_IMPROVEMENTS.md
diff --git a/game_of_everything/EVAL_FINAL_SUMMARY.md b/docs/notes/EVAL_FINAL_SUMMARY.md
similarity index 100%
rename from game_of_everything/EVAL_FINAL_SUMMARY.md
rename to docs/notes/EVAL_FINAL_SUMMARY.md
diff --git a/game_of_everything/EVAL_IMPROVEMENTS.md b/docs/notes/EVAL_IMPROVEMENTS.md
similarity index 100%
rename from game_of_everything/EVAL_IMPROVEMENTS.md
rename to docs/notes/EVAL_IMPROVEMENTS.md
diff --git a/game_of_everything/EVAL_TEST_RESULTS.md b/docs/notes/EVAL_TEST_RESULTS.md
similarity index 100%
rename from game_of_everything/EVAL_TEST_RESULTS.md
rename to docs/notes/EVAL_TEST_RESULTS.md
diff --git a/game_of_everything/FIXES_SUMMARY.md b/docs/notes/FIXES_SUMMARY.md
similarity index 100%
rename from game_of_everything/FIXES_SUMMARY.md
rename to docs/notes/FIXES_SUMMARY.md
diff --git a/game_of_everything/docs/phase1_complete.md b/docs/notes/phase1_complete.md
similarity index 100%
rename from game_of_everything/docs/phase1_complete.md
rename to docs/notes/phase1_complete.md
diff --git a/game_of_everything/docs/phase2_bedrock_tool_blocker.md b/docs/notes/phase2_bedrock_tool_blocker.md
similarity index 100%
rename from game_of_everything/docs/phase2_bedrock_tool_blocker.md
rename to docs/notes/phase2_bedrock_tool_blocker.md
diff --git a/game_of_everything/docs/phase2_implementation_summary.md b/docs/notes/phase2_implementation_summary.md
similarity index 100%
rename from game_of_everything/docs/phase2_implementation_summary.md
rename to docs/notes/phase2_implementation_summary.md
diff --git a/game_of_everything/docs/phase2_status.md b/docs/notes/phase2_status.md
similarity index 100%
rename from game_of_everything/docs/phase2_status.md
rename to docs/notes/phase2_status.md
diff --git a/docs/requests.md b/docs/samples/requests.md
similarity index 100%
rename from docs/requests.md
rename to docs/samples/requests.md

From f746f7bcd6e5c06b435db6d1bdec0989576d769e Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 16:36:16 -0700
Subject: [PATCH 07/21] docs(AGENT.md): update v2 status to phases 0-4
 complete, phase 5 next

Current state section, key components listing, commands, and roadmap
table were all stale (still described Phase 2 as the latest). Bring
everything in sync with CLAUDE.md.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 AGENT.md | 58 +++++++++++++++++++++++++++++++++++---------------------
 1 file changed, 36 insertions(+), 22 deletions(-)

diff --git a/AGENT.md b/AGENT.md
index 84efffa..8a1254e 100644
--- a/AGENT.md
+++ b/AGENT.md
@@ -16,20 +16,22 @@ The project is in active rewrite. There are two parallel codebases:
 
 v2 models scenarios as a directed graph of **entities** (exploitable vulnerabilities) connected by **typed edges** (attacker capabilities). See `docs/rewrite/entity_graph_model.md` for full spec.
 
-### Current State (Phase 2 complete, Phase 3 next)
+### Current State (Phases 0–4 complete, Phase 5 next)
 
 **What works now:**
-- Single entity → full construction crew (Engineer/Opus → Developer/Sonnet → Attacker/Sonnet) → deploy → L2 test → retry escalation
+- Full end-to-end single-system flow: `goe.flow run "..."` → plan → build all entities → package output
+- Multi-system flow: parallel builds across systems, `TopologyEnvironment`, `docker-compose.yml` + `chain_playbook.yaml`
+- L3 chain test gates overall success; `chain_attacker` synthesizes end-to-end procedures
+- Checkpoint/resume: `--resume output/.checkpoints/<run_id>/`
+- Artifacts/eval: opt-in LLM conversation persistence and evaluation suites
 - 3 runtimes: Express (Node.js 20), Flask (Python 3), Apache/PHP
 - 13 web vulnerability atoms (SQLi, CMDi, XSS, SSTI, file upload, path traversal, deserialization, etc.)
-- Confirmed passing: SQLi/Express, CMDi/Flask, SQLi/PHP, XSS-stored/PHP, XSS-admin-bot/Express
-- `python -m goe.planner "..."` → validated entity graph YAML (all planning agents use Sonnet)
-- Static validator (7 checks), BuildScheduler (topological ordering + value propagation)
+- Confirmed passing single entities: SQLi/Express, CMDi/Flask, SQLi/PHP, XSS-stored/PHP, XSS-admin-bot/Express
 
-**What's next (Phase 3):**
-- Flow orchestrator: graph → build all entities → package output
-- `goe run "..."` CLI end-to-end
-- Deliverable: user request → validated deploy script + playbook
+**What's next (Phase 5 — Polish and Parity):**
+- Atom integration into construction crew (engineer receives relevant atoms via RAG)
+- EC2 deploy (port v1's `ec2_deploy.py`)
+- Cost optimization, observability, preset apps
 
 ### Key Components
 
@@ -37,32 +39,44 @@ v2 models scenarios as a directed graph of **entities** (exploitable vulnerabili
 goe/
   bedrock.py              Direct boto3 Bedrock wrapper (no crewAI)
   build.py                Single-entity pipeline + CLI entry point
-  construction_crew/      Engineer → Developer → Attacker agents
+  construction_crew/      Engineer → Developer → Attacker agents (+ chain_attacker)
   executor/               Procedure DSL runner (HTTP, shell, browser)
   runtimes/               Deterministic deploy script generation
   retry/                  Diagnostician + escalation router
   container/              TestEnvironment adapter over v1 Docker tools
   graph/                  EntityGraph, validator (7 checks), topology, BuildScheduler
-  planner/                design_systems, plan_entities, specify_entities, connect_edges, resolve, pipeline
+  planner/                design_systems, plan_killchain, plan_entities, specify_entities, connect_edges, resolve, pipeline
+  flow/                   Orchestrator (plan → build → package), CLI entry point, checkpoint/resume
+  packaging/              deploy.sh + playbook.yaml + README generation
+  metrics/                MetricsSession, token/latency/cost instrumentation
+  artifacts/              Opt-in LLM conversation + file persistence
+  eval/                   Evaluation suites (build, planning, full)
+  services/               Shared service helpers
 ```
 
 ### Running v2
 
 ```bash
-# Plan an attack graph from natural language (requires AWS creds)
+# Full end-to-end run (requires AWS creds + Docker)
 cd game_of_everything
+.venv/bin/python -m goe.flow run "web app with SQL injection that leaks credentials"
+.venv/bin/python -m goe.flow run --verbose "SSH server with weak credentials and SUID privesc"
+.venv/bin/python -m goe.flow run --resume output/.checkpoints/<run_id>/
+
+# Re-test an existing output directory (no LLM — deploys in Docker and runs playbook)
+.venv/bin/python -m goe.flow test output/<run_id>/
+
+# Plan only (Steps 0–3, outputs graph YAML)
 .venv/bin/python -m goe.planner "web app with SQL injection leading to credential theft"
-.venv/bin/python -m goe.planner "..." --output graph.yaml --verbose
 
 # Build a single entity end-to-end
 .venv/bin/python -m goe.build --spec tests/fixtures/entities/sqli_express.yaml
 
-# Run the entity test suite (requires Docker + AWS creds)
-.venv/bin/pytest tests/test_build.py -v -m "llm and docker" -k "sqli"
-
 # Fast unit tests (no Docker, no LLM)
-.venv/bin/pytest tests/test_bedrock.py tests/test_runtimes.py -v
-.venv/bin/pytest tests/test_graph_models.py tests/test_topology.py tests/test_validator.py tests/test_build_scheduler.py tests/test_resolve.py tests/test_planner.py -v
+.venv/bin/python -m pytest -m "not docker and not llm"
+
+# Full test suite (requires Docker + AWS creds)
+.venv/bin/python -m pytest tests/
 ```
 
 ### Procedure DSL
@@ -110,7 +124,7 @@ See `docs/rewrite/implementation_plan.md` for the full phased plan with status.
 |-------|--------|-------------|
 | 0 — Foundation | ✅ Complete | Models, executor, container adapter |
 | 1 — Construction Crew | ✅ Complete | Single entity E2E with retry |
-| 2 — Graph Planning | ✅ Complete | `goe plan "..."` → valid entity graph |
-| 3 — E2E Single System | ⬜ Planned | `goe run "..."` → deploy script + playbook |
-| 4 — Multi-System | ⬜ Planned | docker-compose + chain test |
-| 5 — Polish | ⬜ Planned | Atom RAG, EC2, cost optimization |
+| 2 — Graph Planning | ✅ Complete | `goe.planner "..."` → valid entity graph |
+| 3 — E2E Single System | ✅ Complete | `goe.flow run "..."` → deploy script + playbook |
+| 4 — Multi-System | ✅ Complete | docker-compose + chain test |
+| 5 — Polish and Parity | ⬜ Planned | Atom RAG, EC2, cost optimization, preset apps |

From 55a2f43161029e954e08a9870265acc6e22473a8 Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 16:36:43 -0700
Subject: [PATCH 08/21] docs(v2_implementation_plan): mark Phase 4 as complete
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Add status summary and ✅ markers for Phase 4 sub-sections,
matching CLAUDE.md which already notes phases 0-4 complete.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 docs/architecture/v2_implementation_plan.md | 20 +++++++++++++-------
 1 file changed, 13 insertions(+), 7 deletions(-)

diff --git a/docs/architecture/v2_implementation_plan.md b/docs/architecture/v2_implementation_plan.md
index e7de56e..65b3c00 100644
--- a/docs/architecture/v2_implementation_plan.md
+++ b/docs/architecture/v2_implementation_plan.md
@@ -189,16 +189,22 @@ Port v1's checkpoint system. Port v1's `GoEConsole` for minimal terminal output.
 
 ---
 
-## Phase 4: Multi-System
+## Phase 4: Multi-System ✅ COMPLETE
 
-### 4.1 — Multi-System Build
-Extend build scheduler for parallel builds across systems (ThreadPoolExecutor). Cross-system edges still enforce ordering. Port v1's `PipelineRenderer` + `BoxEventEmitter`.
+**Status**: Implemented. `TopologyEnvironment` deploys systems in Docker; `chain_attacker` synthesizes
+end-to-end procedures with `${system.<id>.host/port}` interpolation. Multi-system output: per-system
+deploy scripts + `docker-compose.yml` + `chain_playbook.yaml`. L3 chain test gates overall success.
 
-### 4.2 — Chain Test
-After all entities pass individual L2, deploy full topology and execute procedures in edge order, piping outputs between entities.
+### 4.1 — Multi-System Build ✅
+Parallel builds across systems via `BuildScheduler`. Cross-system edges enforce ordering. Port v1's
+`PipelineRenderer` + `BoxEventEmitter` pattern.
 
-### 4.3 — Docker Compose Generation
-Per-system `deploy_<system_id>.sh` + `docker-compose.yml` + chain-validated playbook.
+### 4.2 — Chain Test ✅
+`chain_attacker.py` (Sonnet) produces a combined `Procedure` across all built entities. `TopologyEnvironment`
+deploys all systems and executes the chain playbook end-to-end.
+
+### 4.3 — Docker Compose Generation ✅
+Per-system `deploy_<system_id>.sh` + `docker-compose.yml` + `chain_playbook.yaml` written by `packager.py`.
 
 ---
 

From 05e194e40a8258030141c40d15d66f5ec89c7fea Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 16:37:27 -0700
Subject: [PATCH 09/21] docs(AGENT.md): fix three broken docs/rewrite/ paths
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

docs/rewrite/ no longer exists; update links to the correct
docs/architecture/ paths. goe_rewrite.md never existed — use
v2_spec.md which has the full Procedure DSL reference.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 AGENT.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/AGENT.md b/AGENT.md
index 8a1254e..2f9f039 100644
--- a/AGENT.md
+++ b/AGENT.md
@@ -14,7 +14,7 @@ The project is in active rewrite. There are two parallel codebases:
 
 ## v2 Architecture
 
-v2 models scenarios as a directed graph of **entities** (exploitable vulnerabilities) connected by **typed edges** (attacker capabilities). See `docs/rewrite/entity_graph_model.md` for full spec.
+v2 models scenarios as a directed graph of **entities** (exploitable vulnerabilities) connected by **typed edges** (attacker capabilities). See `docs/architecture/entity_graph_model.md` for full spec.
 
 ### Current State (Phases 0–4 complete, Phase 5 next)
 
@@ -81,7 +81,7 @@ cd game_of_everything
 
 ### Procedure DSL
 
-Attack procedures are YAML files with a strict schema. Actions: `http_request`, `exec_attacker`, `exec_attacker_bg` (detached background), `exec_target`, `listen`, `sleep`, browser actions (`navigate`, `click`, `fill_and_submit`, `evaluate`, etc.). See `docs/rewrite/goe_rewrite.md` for full DSL reference.
+Attack procedures are YAML files with a strict schema. Actions: `http_request`, `exec_attacker`, `exec_attacker_bg` (detached background), `exec_target`, `listen`, `sleep`, browser actions (`navigate`, `click`, `fill_and_submit`, `evaluate`, etc.). See `docs/architecture/v2_spec.md` for the full DSL reference.
 
 ### Runtime Templates
 
@@ -118,7 +118,7 @@ v1 uses crewAI Flow with a multi-agent pipeline. See `CLAUDE.md` for full v1 doc
 
 ## Implementation Roadmap
 
-See `docs/rewrite/implementation_plan.md` for the full phased plan with status.
+See `docs/architecture/v2_implementation_plan.md` for the full phased plan with status.
 
 | Phase | Status | Deliverable |
 |-------|--------|-------------|

From 42e0f635379a57aab8cc915a83552d3e24294db9 Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 16:39:20 -0700
Subject: [PATCH 10/21] docs(README): fix stale model IDs and config key names

- Prerequisites: use full inference profile IDs (added version suffix)
- Configuration example: update default model ID to full profile format
- models.overrides: use v2 role names (engineer/attacker/etc.) instead
  of v1 agent names (app_generation_agent); note keys match goe/config.py
- GOE_MODEL env var suffix: <ROLE_NAME> not <AGENT_NAME>

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 README.md | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/README.md b/README.md
index e7dcb76..bc7b0f8 100644
--- a/README.md
+++ b/README.md
@@ -18,7 +18,7 @@ Game of Everything is an agentic framework for building vulnerable cybersecurity
 - AWS account with access to **Amazon Bedrock** (Claude Sonnet/Opus models + `amazon.titan-embed-text-v2:0`)
 
 > **Bedrock model access**: Enable the following models in your AWS Bedrock console before first use:
-> `us.anthropic.claude-sonnet-4-6`, `us.anthropic.claude-opus-4-6-v1`, `amazon.titan-embed-text-v2:0`
+> `us.anthropic.claude-sonnet-4-6-20251001-v1:0`, `us.anthropic.claude-opus-4-6-v1:0`, `amazon.titan-embed-text-v2:0`
 
 ---
 
@@ -61,11 +61,12 @@ secret_access_key = ""
 region            = "us-east-1"
 
 [models]
-default = "anthropic.claude-sonnet-4-6"   # default Bedrock model for all agents
+# Use the full cross-region inference profile ID
+default = "us.anthropic.claude-sonnet-4-6-20251001-v1:0"
 
 [models.overrides]
-# Per-agent overrides — keys match agent names in config/agents.yaml
-# app_generation_agent = "anthropic.claude-opus-4-6-v1"
+# Per-role overrides — keys match role names in goe/config.py
+# engineer = "us.anthropic.claude-opus-4-6-v1:0"
 
 [deploy]
 instance_type     = "t3.medium"
@@ -74,7 +75,7 @@ security_group_id = ""        # auto-created if blank
 subnet_id         = ""        # auto-selected if blank
 ```
 
-Environment variables override toml values: `AWS_ACCESS_KEY_ID`, `AWS_SECRET_ACCESS_KEY`, `AWS_REGION`, `GOE_DEFAULT_MODEL`, `GOE_MODEL_<AGENT_NAME>`.
+Environment variables override toml values: `AWS_ACCESS_KEY_ID`, `AWS_SECRET_ACCESS_KEY`, `AWS_REGION`, `GOE_DEFAULT_MODEL`, `GOE_MODEL_<ROLE_NAME>`.
 
 ### Enable Bedrock Model Access
 

From 0014618f996ac56fa0df963681e5c3ff95237b1a Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 16:40:01 -0700
Subject: [PATCH 11/21] chore: remove temp-requirements.txt scratch file

Unreferenced leftover from development; uv + pyproject.toml
is the authoritative dependency source.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 game_of_everything/temp-requirements.txt | 14 --------------
 1 file changed, 14 deletions(-)
 delete mode 100644 game_of_everything/temp-requirements.txt

diff --git a/game_of_everything/temp-requirements.txt b/game_of_everything/temp-requirements.txt
deleted file mode 100644
index 95be937..0000000
--- a/game_of_everything/temp-requirements.txt
+++ /dev/null
@@ -1,14 +0,0 @@
-boto3==1.43.40
-botocore==1.43.40
-chromadb==1.5.9
-crewai==1.15.1
-cryptography==49.0.0
-Flask==3.1.3
-json_repair==0.61.2
-playwright==1.61.0
-pydantic==2.13.4
-pytest==9.1.1
-python-dotenv==1.2.2
-PyYAML==6.0.3
-rich==15.0.0
-tomli==2.4.1

From 55579bb73036a767b60e88090822b3f91983731f Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 16:51:08 -0700
Subject: [PATCH 12/21] fix(main): implement build_attacker entry point
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

The command was documented in README and CLAUDE.md but never wired up —
running it would print "command not found". Adds the function and
registers it in [project.scripts] so `uv sync` makes it available.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 game_of_everything/pyproject.toml             |  1 +
 .../src/game_of_everything/main.py            | 23 +++++++++++++++++++
 2 files changed, 24 insertions(+)

diff --git a/game_of_everything/pyproject.toml b/game_of_everything/pyproject.toml
index 7f42216..24d7eff 100644
--- a/game_of_everything/pyproject.toml
+++ b/game_of_everything/pyproject.toml
@@ -29,6 +29,7 @@ goe = "goe.flow.__main__:main"
 kickoff = "game_of_everything.main:kickoff"
 run_crew = "game_of_everything.main:kickoff"
 plot = "game_of_everything.main:plot"
+build_attacker = "game_of_everything.main:build_attacker"
 goe-destroy = "game_of_everything.main:destroy"
 goe-deploy = "game_of_everything.main:deploy_from_output"
 
diff --git a/game_of_everything/src/game_of_everything/main.py b/game_of_everything/src/game_of_everything/main.py
index 72902a3..082666b 100644
--- a/game_of_everything/src/game_of_everything/main.py
+++ b/game_of_everything/src/game_of_everything/main.py
@@ -423,5 +423,28 @@ def destroy():
     print(f"Destroyed infrastructure for run {args.run_id}")
 
 
+def build_attacker():
+    """Pre-build the goe-attacker Docker image.
+
+    Separates image build failures from test failures so you know before
+    running a full pipeline whether the attacker Dockerfile is broken.
+    """
+    import docker
+    from game_of_everything.tools.test_environment import (
+        ATTACKER_DOCKERFILE_DIR,
+        ATTACKER_IMAGE_TAG,
+    )
+
+    client = docker.from_env()
+    print(f"Building {ATTACKER_IMAGE_TAG} from {ATTACKER_DOCKERFILE_DIR} ...")
+    _, logs = client.images.build(
+        path=ATTACKER_DOCKERFILE_DIR, tag=ATTACKER_IMAGE_TAG, rm=True
+    )
+    for chunk in logs:
+        if "stream" in chunk:
+            print(chunk["stream"], end="", flush=True)
+    print(f"Done: {ATTACKER_IMAGE_TAG}")
+
+
 if __name__ == "__main__":
     kickoff()

From e56b3aae12e66d11ea1f075157eac897fe930df6 Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 16:51:41 -0700
Subject: [PATCH 13/21] =?UTF-8?q?docs(CONTRIBUTING):=20fix=20bedrock=5Facc?=
 =?UTF-8?q?ess.py=20invocation=20=E2=80=94=20model=20IDs=20required?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

The script exits 1 when called without args; omitting them as CONTRIBUTING
showed would confuse a first-time contributor. Align with the correct
full invocation already shown in README.md.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 CONTRIBUTING.md | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index f00ed79..5152dc3 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -121,7 +121,10 @@ cp goe.toml.example goe.toml
 Verify Bedrock access and ingest the RAG atom database before running the full pipeline:
 
 ```bash
-python scripts/bedrock_access.py
+python scripts/bedrock_access.py \
+  us.anthropic.claude-sonnet-4-6-20251001-v1:0 \
+  us.anthropic.claude-opus-4-6-v1:0 \
+  amazon.titan-embed-text-v2:0
 python scripts/rag_gen.py
 ```
 

From 9b05ad11640f309fe6cbea79c6df5a42da26a04c Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 16:53:46 -0700
Subject: [PATCH 14/21] fix(scripts/query): read AWS credentials from goe.toml

query.py only read credentials from env vars, while rag_gen.py reads
from goe.toml (with env var override). A dev with creds only in goe.toml
would get Bedrock auth errors when verifying RAG results. Align to the
same credential-resolution pattern as rag_gen.py. Also removes the
dotenv dependency which wasn't doing anything useful here.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 game_of_everything/scripts/query.py | 26 ++++++++++++++++++--------
 1 file changed, 18 insertions(+), 8 deletions(-)

diff --git a/game_of_everything/scripts/query.py b/game_of_everything/scripts/query.py
index cf0ae98..88d3c33 100644
--- a/game_of_everything/scripts/query.py
+++ b/game_of_everything/scripts/query.py
@@ -10,14 +10,12 @@
 import os
 import sys
 import argparse
+import tomllib
 from pathlib import Path
 import chromadb
 import boto3
-from dotenv import load_dotenv
 from chromadb.utils.embedding_functions import AmazonBedrockEmbeddingFunction
 
-load_dotenv()
-
 SCRIPT_DIR = Path(__file__).parent
 PROJECT_DIR = SCRIPT_DIR.parent
 CHROMA_DB_PATH = PROJECT_DIR / "src/game_of_everything" / "chroma_db"
@@ -27,11 +25,23 @@
     "web_vuln_atoms": "web_vuln_atoms",
 }
 
-aws_session = boto3.Session(
-    aws_access_key_id=os.getenv("AWS_ACCESS_KEY_ID", ""),
-    aws_secret_access_key=os.getenv("AWS_SECRET_ACCESS_KEY", ""),
-    region_name=os.getenv("AWS_REGION", "us-east-1"),
-)
+# Read AWS credentials from goe.toml (same as rag_gen.py), with env var override.
+toml_path = PROJECT_DIR / "goe.toml"
+_aws_cfg: dict = {}
+if toml_path.exists():
+    with open(toml_path, "rb") as _f:
+        _aws_cfg = tomllib.load(_f).get("aws", {})
+
+_session_kwargs: dict = {
+    "region_name": os.getenv("AWS_REGION", _aws_cfg.get("region", "us-east-1"))
+}
+_key_id = os.getenv("AWS_ACCESS_KEY_ID") or _aws_cfg.get("access_key_id", "")
+_secret = os.getenv("AWS_SECRET_ACCESS_KEY") or _aws_cfg.get("secret_access_key", "")
+if _key_id and _secret:
+    _session_kwargs["aws_access_key_id"] = _key_id
+    _session_kwargs["aws_secret_access_key"] = _secret
+
+aws_session = boto3.Session(**_session_kwargs)
 
 bedrock_ef = AmazonBedrockEmbeddingFunction(
     session=aws_session,

From 77d71d1062fc26fbca3ad73b2390c2d8da3b0366 Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 17:41:54 -0700
Subject: [PATCH 15/21] fix(goe.toml.example): remove stale module names from
 [deploy] comment

The old comment named steps/deploy.py + ec2_deploy.py which was the
pre-Terraform deploy path. Shorten to just "EC2 deploy settings."

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 game_of_everything/goe.toml.example | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/game_of_everything/goe.toml.example b/game_of_everything/goe.toml.example
index 16e0a44..6f6af9d 100644
--- a/game_of_everything/goe.toml.example
+++ b/game_of_everything/goe.toml.example
@@ -27,7 +27,7 @@ default = "us.anthropic.claude-sonnet-4-6-20251001-v1:0"
 # chain_attacker = "us.anthropic.claude-sonnet-4-6-20251001-v1:0"
 
 [deploy]
-# EC2 one-click deploy settings used by steps/deploy.py + ec2_deploy.py.
+# EC2 deploy settings.
 # key_pair_name is required for deploy to proceed; the other fields are
 # optional and auto-discovered/created when blank.
 instance_type      = "t3.medium"

From bf28186e872112d8fe0ccc3b5bb035b735c06ffa Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 17:42:27 -0700
Subject: [PATCH 16/21] chore(topology_environment): remove dead _V1_TOOLS
 constant + fix stale comment

_V1_TOOLS was never read anywhere; the actual imports come from
goe.container.test_environment_tool. The bootstrap comment also
referenced "v1's chain test" which has no meaning outside the
development sprint context.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 game_of_everything/goe/container/topology_environment.py | 7 ++-----
 1 file changed, 2 insertions(+), 5 deletions(-)

diff --git a/game_of_everything/goe/container/topology_environment.py b/game_of_everything/goe/container/topology_environment.py
index 7434b6e..c348284 100644
--- a/game_of_everything/goe/container/topology_environment.py
+++ b/game_of_everything/goe/container/topology_environment.py
@@ -22,15 +22,12 @@
 
 logger = logging.getLogger(__name__)
 
-# Reuse the attacker image and wait_for_docker from v1
-_V1_TOOLS = "game_of_everything.tools.test_environment"
-
 _BASE_TARGET_IMAGE = "ubuntu:22.04"
 _CHAIN_NETWORK_NAME = "goe_chain_net"
 _ATTACKER_CONTAINER_PREFIX = "goe_chain_attacker"
 
-# Bootstrap installed into each target before the deploy script runs.
-# Matches the subset that v1's chain test installed.
+# Bootstrap installed into each target before the deploy script runs:
+# apt update + curl, netcat, and common build/network tools.
 # Bootstrap command imported from central registry
 from goe.container.bootstrap import get_bootstrap_command
 _BOOTSTRAP_CMD = get_bootstrap_command("ubuntu")

From fee3485c4ee6208560991714f3df561ea3e7e880 Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 17:43:52 -0700
Subject: [PATCH 17/21] refactor(attacker): hoist duplicate _parse to module
 level

attack() and fix_procedure() each defined an identical nested _parse
function. chain_attacker.py already uses a module-level _parse; align
attacker.py to the same pattern.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 .../goe/construction_crew/attacker.py         | 19 +++++++------------
 1 file changed, 7 insertions(+), 12 deletions(-)

diff --git a/game_of_everything/goe/construction_crew/attacker.py b/game_of_everything/goe/construction_crew/attacker.py
index 2276e24..035cc59 100644
--- a/game_of_everything/goe/construction_crew/attacker.py
+++ b/game_of_everything/goe/construction_crew/attacker.py
@@ -18,6 +18,13 @@
 _RUNTIMES_DIR = Path(__file__).resolve().parent.parent / "runtimes" / "templates"
 
 
+def _parse(raw: str) -> "Procedure":
+    from goe.models.procedure import Procedure
+    from goe.construction_crew._yaml_repair import safe_parse_yaml
+    data = safe_parse_yaml(raw)
+    return Procedure.model_validate(data)
+
+
 def _load_attacker_rules(runtime_id: str) -> str:
     path = _RUNTIMES_DIR / f"{runtime_id}.yaml"
     if not path.exists():
@@ -103,12 +110,6 @@ def attack(
 Write a YAML procedure that exploits the vulnerability and verifies success.
 Output ONLY valid YAML (no markdown fences)."""
 
-    def _parse(raw: str) -> "Procedure":
-        from goe.models.procedure import Procedure
-        from goe.construction_crew._yaml_repair import safe_parse_yaml
-        data = safe_parse_yaml(raw)
-        return Procedure.model_validate(data)
-
     # Inject Testing Guidance as verification (during self-review)
     testing_guidance = "\n\n".join(
         f"### Atom: {a}\n{load_testing_guidance(a)}"
@@ -194,12 +195,6 @@ def fix_procedure(
 Fix the procedure to address exactly this issue. Do not change steps that are working correctly.
 Output ONLY valid YAML (no markdown fences, no explanation)."""
 
-    def _parse(raw: str) -> "Procedure":
-        from goe.models.procedure import Procedure
-        from goe.construction_crew._yaml_repair import safe_parse_yaml
-        data = safe_parse_yaml(raw)
-        return Procedure.model_validate(data)
-
     raw = call(model_id=model, system=_SYSTEM_PROMPT, messages=[{"role": "user", "content": user_msg}], caller="attacker.fix_procedure")
 
     try:

From 3a2181350c691a4f9ab62da9e07a419c9c2d02f6 Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 17:45:24 -0700
Subject: [PATCH 18/21] chore(goe): remove stale phase comments and redundant
 local imports
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

packager.py: drop "(unchanged from Phase 3)" from docstring (stale
milestone note); remove local `import logging` inside two conditional
blocks — logging is already imported at module scope.

orchestrator.py: replace the stale "Phase 0-2 / chain test is Phase 4"
module docstring with a clean four-line phase summary matching the
inline section comments already in the file.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 game_of_everything/goe/flow/orchestrator.py  | 11 ++++++-----
 game_of_everything/goe/packaging/packager.py |  7 ++-----
 2 files changed, 8 insertions(+), 10 deletions(-)

diff --git a/game_of_everything/goe/flow/orchestrator.py b/game_of_everything/goe/flow/orchestrator.py
index f04f7eb..38eb81f 100644
--- a/game_of_everything/goe/flow/orchestrator.py
+++ b/game_of_everything/goe/flow/orchestrator.py
@@ -1,11 +1,12 @@
-"""Top-level single-system orchestrator: plan → schedule → build → package.
+"""Top-level orchestrator: plan → schedule → build → chain test → package.
 
-Wires the existing Phase 0-2 pieces together:
-  planner.pipeline.plan → graph.BuildScheduler → build.build_entity → packaging.package
+Phase 1 — plan:    planner.pipeline.plan → EntityGraph
+Phase 2 — build:   BuildScheduler drives build.build_entity per entity
+Phase 3 — test:    optional L3 chain test via TopologyEnvironment + chain_attacker
+Phase 4 — package: packaging.package writes deploy.sh / playbook.yaml / README
 
 build_entity manages its own per-entity Docker container lifecycle, so the
-orchestrator never touches Docker directly. Per-entity isolation is the existing
-design; the full-topology chain test is Phase 4.
+orchestrator never touches Docker directly.
 """
 
 from __future__ import annotations
diff --git a/game_of_everything/goe/packaging/packager.py b/game_of_everything/goe/packaging/packager.py
index b10258d..3f18add 100644
--- a/game_of_everything/goe/packaging/packager.py
+++ b/game_of_everything/goe/packaging/packager.py
@@ -1,7 +1,7 @@
 """Packager — assemble built entities into a self-contained deploy package.
 
 Single-system: all entities deploy onto one box → one ``deploy.sh``, one
-``playbook.yaml``, one ``README.md`` (unchanged from Phase 3).
+``playbook.yaml``, one ``README.md``.
 
 Multi-system: entities grouped by system_id → per-system ``<sid>_deploy.sh``
 files, a ``docker-compose.yml`` (one ubuntu:22.04 service per system on a shared
@@ -152,9 +152,7 @@ def _build_deploy_sh(graph: "EntityGraph", built: dict[str, "BuildOutcome"], ord
             sections.insert(0, svc)
     combined, warnings = assemble_deploy_script(sections)
     if warnings:
-        import logging
-        logger = logging.getLogger(__name__)
-        logger.warning(f"Deploy script grader fixed {len(warnings)} conflict(s): {warnings}")
+        logging.getLogger(__name__).warning(f"Deploy script grader fixed {len(warnings)} conflict(s): {warnings}")
     return combined
 
 
@@ -341,7 +339,6 @@ def package(
                 from goe.packaging.grader import assemble_deploy_script
                 combined, warnings = assemble_deploy_script(sections)
                 if warnings:
-                    import logging
                     logging.getLogger(__name__).warning(
                         f"Deploy script grader fixed {len(warnings)} conflict(s) on system "
                         f"'{sid}': {warnings}"

From 9eda634bb591e904c0fb783499e9df0ff49b0e37 Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 17:47:09 -0700
Subject: [PATCH 19/21] types(goe): fill missing/bare annotations in
 orchestrator, developer, packager

- orchestrator.py: add outcome: "BuildOutcome" to _snapshot,
  _outcome_from_snapshot (+ return type), _extract_build_summary
- developer.py: tighten -> tuple to -> tuple[BuildArtifact, dict[...]]
- packager.py: formalize chain_procedure: "Procedure | None" = None
  (was a bare default with a trailing comment); add Procedure to
  TYPE_CHECKING imports

All annotation-only changes; no runtime effect.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 game_of_everything/goe/construction_crew/developer.py | 2 +-
 game_of_everything/goe/flow/orchestrator.py           | 6 +++---
 game_of_everything/goe/packaging/packager.py          | 3 ++-
 3 files changed, 6 insertions(+), 5 deletions(-)

diff --git a/game_of_everything/goe/construction_crew/developer.py b/game_of_everything/goe/construction_crew/developer.py
index c1b9c20..0bc8cf3 100644
--- a/game_of_everything/goe/construction_crew/developer.py
+++ b/game_of_everything/goe/construction_crew/developer.py
@@ -65,7 +65,7 @@ def develop(
     edge_schemas: dict | None = None,
     system_context: str | None = None,
     provided_values: dict | None = None,
-) -> tuple:
+) -> tuple["BuildArtifact", dict[str, dict[str, str]]]:
     """Call the Developer LLM to produce source code and a BuildArtifact.
 
     Args:
diff --git a/game_of_everything/goe/flow/orchestrator.py b/game_of_everything/goe/flow/orchestrator.py
index 38eb81f..b9f31a2 100644
--- a/game_of_everything/goe/flow/orchestrator.py
+++ b/game_of_everything/goe/flow/orchestrator.py
@@ -60,7 +60,7 @@ def _slug(text: str, max_len: int = 40) -> str:
     return (s[:max_len].rstrip("_")) or "run"
 
 
-def _snapshot(outcome) -> "ckpt.BuildOutcomeSnapshot":
+def _snapshot(outcome: "BuildOutcome") -> "ckpt.BuildOutcomeSnapshot":
     proc = outcome.procedure
     return ckpt.BuildOutcomeSnapshot(
         deploy_script=outcome.deploy_script or "",
@@ -70,7 +70,7 @@ def _snapshot(outcome) -> "ckpt.BuildOutcomeSnapshot":
     )
 
 
-def _outcome_from_snapshot(entity_id: str, snap: "ckpt.BuildOutcomeSnapshot"):
+def _outcome_from_snapshot(entity_id: str, snap: "ckpt.BuildOutcomeSnapshot") -> "BuildOutcome":
     """Rebuild a BuildOutcome from a checkpoint snapshot (for packaging on resume)."""
     from goe.models.procedure import Procedure
     from goe.models.report import BuildOutcome, EntityResult, EntityStatus
@@ -385,7 +385,7 @@ def _provided_values_for(graph: "EntityGraph", entity: "Entity") -> dict:
     return out
 
 
-def _extract_build_summary(entity: "Entity", outcome) -> dict:
+def _extract_build_summary(entity: "Entity", outcome: "BuildOutcome") -> dict:
     """Parse a completed BuildOutcome into a lightweight summary of concrete facts.
 
     Extracts from the deploy script: which users were created, which paths were written,
diff --git a/game_of_everything/goe/packaging/packager.py b/game_of_everything/goe/packaging/packager.py
index 3f18add..ae13477 100644
--- a/game_of_everything/goe/packaging/packager.py
+++ b/game_of_everything/goe/packaging/packager.py
@@ -24,6 +24,7 @@
 
 if TYPE_CHECKING:
     from goe.graph.models import EntityGraph
+    from goe.models.procedure import Procedure
     from goe.models.report import BuildOutcome
 
 
@@ -285,7 +286,7 @@ def package(
     built: dict[str, "BuildOutcome"],
     out_dir: Path,
     request: str = "",
-    chain_procedure=None,  # Procedure | None — from chain_test
+    chain_procedure: "Procedure | None" = None,
 ) -> Path:
     """Assemble PASSED entities into a self-contained package under ``out_dir``.
 

From d27566ef1619214750659a8ec412a500b4c3a1c2 Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 17:48:56 -0700
Subject: [PATCH 20/21] chore(v1/src): unused imports, mid-file import, steps
 __init__ prune
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

- engineer_requirements.py: remove unused `import rich`
- ui.py: remove unused `import time` (datetime is used instead)
- preset_app_flow.py: move `from pydantic import BaseModel` from line 163
  to the top-of-file imports (PEP 8 E402)
- steps/__init__.py: prune 6 re-exports that are never imported via the
  package — callers import directly from the submodule. Keep only the 7
  names that main.py actually pulls through __init__.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 game_of_everything/src/game_of_everything/steps/__init__.py | 6 ------
 .../src/game_of_everything/steps/engineer_requirements.py   | 1 -
 .../src/game_of_everything/steps/preset_app_flow.py         | 4 ++--
 game_of_everything/src/game_of_everything/ui.py             | 1 -
 4 files changed, 2 insertions(+), 10 deletions(-)

diff --git a/game_of_everything/src/game_of_everything/steps/__init__.py b/game_of_everything/src/game_of_everything/steps/__init__.py
index 2b0c30f..d694846 100644
--- a/game_of_everything/src/game_of_everything/steps/__init__.py
+++ b/game_of_everything/src/game_of_everything/steps/__init__.py
@@ -1,10 +1,4 @@
-from game_of_everything.steps.synthesize_scenario import run_synthesize_scenario
 from game_of_everything.steps.synthesize_topology import run_synthesize_topology
-from game_of_everything.steps.resolve_custom_apps import run_resolve_custom_apps
-from game_of_everything.steps.engineer_requirements import run_engineer_requirements
-from game_of_everything.steps.generate_implementation import run_generate_implementation
-from game_of_everything.steps.test_snippets import run_test_snippets
-from game_of_everything.steps.finalize_script import run_finalize_script
 from game_of_everything.steps.run_box_pipelines import run_box_pipelines
 from game_of_everything.steps.test_chain import run_chain_test
 from game_of_everything.steps.finalize_topology import run_finalize_topology
diff --git a/game_of_everything/src/game_of_everything/steps/engineer_requirements.py b/game_of_everything/src/game_of_everything/steps/engineer_requirements.py
index b20a90e..e998938 100644
--- a/game_of_everything/src/game_of_everything/steps/engineer_requirements.py
+++ b/game_of_everything/src/game_of_everything/steps/engineer_requirements.py
@@ -2,7 +2,6 @@
 
 import json
 import re
-import rich
 from typing import Optional, TYPE_CHECKING
 from crewai import Agent, Task, Crew, Process
 
diff --git a/game_of_everything/src/game_of_everything/steps/preset_app_flow.py b/game_of_everything/src/game_of_everything/steps/preset_app_flow.py
index 8b342f2..a673473 100644
--- a/game_of_everything/src/game_of_everything/steps/preset_app_flow.py
+++ b/game_of_everything/src/game_of_everything/steps/preset_app_flow.py
@@ -18,6 +18,8 @@
 from pathlib import Path
 from typing import Optional, TYPE_CHECKING
 
+from pydantic import BaseModel
+
 from crewai import Agent, Task, Crew, Process
 from crewai.flow import Flow, listen, start
 
@@ -160,8 +162,6 @@ def _run_verdict_crew(
 # State model for the flow
 # ---------------------------------------------------------------------------
 
-from pydantic import BaseModel
-
 
 class PresetAppState(BaseModel):
     vector: Optional[PresetVector] = None
diff --git a/game_of_everything/src/game_of_everything/ui.py b/game_of_everything/src/game_of_everything/ui.py
index af6b064..f5fb7fc 100644
--- a/game_of_everything/src/game_of_everything/ui.py
+++ b/game_of_everything/src/game_of_everything/ui.py
@@ -7,7 +7,6 @@
 import io
 import logging
 import sys
-import time
 from contextlib import contextmanager
 from datetime import datetime
 from pathlib import Path

From 1c1c5ca76ad2d79c9deb3586d999cd92c44b2a92 Mon Sep 17 00:00:00 2001
From: StengoS <stengo46@gmail.com>
Date: Sun, 26 Jul 2026 17:50:31 -0700
Subject: [PATCH 21/21] chore: delete superseded test_browser_phase1.py script

This was a one-time verification tool for Phase 1 browser infrastructure.
Its CDP startup, teardown, and BoundBrowserTool smoke tests are all now
covered by tests/test_executor.py and tests/test_solve_script.py. The
script used sys.path hackery, was not wired into pytest, and silently
skipped if imports failed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
---
 .../scripts/test_browser_phase1.py            | 129 ------------------
 1 file changed, 129 deletions(-)
 delete mode 100755 game_of_everything/scripts/test_browser_phase1.py

diff --git a/game_of_everything/scripts/test_browser_phase1.py b/game_of_everything/scripts/test_browser_phase1.py
deleted file mode 100755
index 0d0a518..0000000
--- a/game_of_everything/scripts/test_browser_phase1.py
+++ /dev/null
@@ -1,129 +0,0 @@
-#!/usr/bin/env python3
-"""
-Phase 1 verification script for browser-use infrastructure.
-
-Tests:
-1. Browser sidecar starts and CDP endpoint becomes reachable
-2. All three containers (target, attacker, browser) start and teardown cleanly
-3. BoundBrowserTool can execute a simple task
-"""
-
-import sys
-from pathlib import Path
-
-# Add src to path so we can import game_of_everything modules
-sys.path.insert(0, str(Path(__file__).parent.parent / "src"))
-
-from game_of_everything.tools.test_environment import TestEnvironmentTool
-
-
-def test_browser_startup():
-    """Test 1 & 2: Start environment with browser enabled and verify CDP is reachable."""
-    print("=" * 70)
-    print("TEST 1 & 2: Browser sidecar startup and teardown")
-    print("=" * 70)
-
-    env = TestEnvironmentTool(enable_browser=True)
-
-    try:
-        print("\nStarting test environment with browser enabled...")
-        env.setup()
-
-        print(f"✓ Target container: {env.target_name}")
-        print(f"✓ Attacker container: {env.attacker_name}")
-        print(f"✓ Browser container: {env._prefix}browser")
-        print(f"✓ Network: {env.network_name}")
-        print(f"✓ Browser CDP URL: {env.browser_cdp_url}")
-        print(f"✓ Browser host port: {env._browser_host_port}")
-
-        # Verify containers are actually running
-        assert env.target_container is not None
-        assert env.attacker_container is not None
-        assert env.browser_container is not None
-        assert env.browser_cdp_url.startswith("ws://localhost:")
-        assert env._browser_host_port > 0
-
-        print("\n✓ All containers started successfully")
-        print("✓ CDP endpoint is reachable")
-
-    finally:
-        print("\nTearing down test environment...")
-        env.teardown()
-        print("✓ Teardown complete")
-
-    print("\n" + "=" * 70)
-    print("TEST 1 & 2: PASSED")
-    print("=" * 70)
-
-
-def test_browser_tool():
-    """Test 3: Smoke-test BoundBrowserTool with a simple navigation task."""
-    print("\n" + "=" * 70)
-    print("TEST 3: BoundBrowserTool smoke test")
-    print("=" * 70)
-
-    # Note: This requires browser-use and playwright to be installed
-    # If not installed, the test will fail gracefully with an import error
-
-    try:
-        from game_of_everything.tools.bound_browser_tool import BoundBrowserTool
-    except ImportError as e:
-        print(f"\n⚠ SKIPPED: BoundBrowserTool import failed: {e}")
-        print("Run `crewai install` and `playwright install chromium` to enable this test")
-        return
-
-    env = TestEnvironmentTool(enable_browser=True)
-
-    try:
-        print("\nStarting test environment with browser...")
-        env.setup()
-
-        print(f"Browser CDP URL: {env.browser_cdp_url}")
-
-        # Create the tool
-        tool = BoundBrowserTool(
-            cdp_url=env.browser_cdp_url,
-            target_base_url="http://example.com"
-        )
-
-        print("\nExecuting browser task: 'Navigate to http://example.com and return the page title'")
-        result = tool._run("Navigate to http://example.com and return the page title")
-
-        print(f"\nBrowser task result: {result[:200]}...")
-
-        if "ERROR" in result:
-            print(f"\n✗ Browser task returned an error: {result}")
-        else:
-            print("\n✓ Browser task executed successfully")
-
-    except Exception as e:
-        print(f"\n✗ Browser tool test failed: {e}")
-        import traceback
-        traceback.print_exc()
-    finally:
-        print("\nTearing down test environment...")
-        env.teardown()
-        print("✓ Teardown complete")
-
-    print("\n" + "=" * 70)
-    print("TEST 3: COMPLETED (check output above for pass/fail)")
-    print("=" * 70)
-
-
-if __name__ == "__main__":
-    print("\nPhase 1 Verification: Browser Infrastructure")
-    print("=" * 70)
-
-    try:
-        test_browser_startup()
-        test_browser_tool()
-
-        print("\n" + "=" * 70)
-        print("PHASE 1 VERIFICATION: ALL TESTS COMPLETED")
-        print("=" * 70)
-
-    except Exception as e:
-        print(f"\n✗ PHASE 1 VERIFICATION FAILED: {e}")
-        import traceback
-        traceback.print_exc()
-        sys.exit(1)